def test_convert(self):
# TODO
#
# Assert equivalence to a verified file
source = os.path.join(TEST_FILE_DIR, SAMPLE_MB_FILE_NAME)
target = os.path.join(TEST_FILE_DIR, CONVERTED_OUTPUT_FILE_NAME)
BiologicMbToMaccorProcedure.convert(source, target)
os.remove(target)
def test_biologic_mb_text_to_maccor_xml(self):
xml = BiologicMbToMaccorProcedure.biologic_mb_text_to_maccor_xml(SAMPLE_MB_TEXT)
xml_lines = xml.splitlines()
expected_xml_lines = EXPECTED_XML.splitlines()
for line_num in range(len(expected_xml_lines)):
assert line_num < len(xml_lines)
self.assertEqual(expected_xml_lines[line_num], xml_lines[line_num])
def test_biologic_mb_text_to_maccor_xml(self):
xml = BiologicMbToMaccorProcedure.biologic_mb_text_to_maccor_xml(self.sample_mb_text)
xml_lines = xml.splitlines()
expected_xml_lines = self.expected_xml.splitlines()
for line_num in range(len(expected_xml_lines)):
assert line_num < len(xml_lines)
self.assertEqual(expected_xml_lines[line_num], xml_lines[line_num])
def test_convert_constant_current_step(self):
seq = {
"ctrl_type": "CC",
"ctrl1_val": "100.00",
"ctrl1_val_unit": "µA",
"ctrl1_val_vs": "",
"Ns": "1",
"Apply I/C": "I",
"charge/discharge": "Discharge",
"lim_nb": "1",
"lim1_type": "Ecell",
"lim1_comp": ">",
"lim1_value": "4.4",
"lim1_value_unit": "V",
"lim1_action": "End",
"lim1_seq": "3",
"rec_nb": "1",
"rec1_type": "I",
"rec1_value": "2.2",
"rec1_value_unit": "A",
}
seq_num_by_step_num = {1: 1, 3: 5}
seq_num_is_non_empty_loop_start = set()
end_step_num = 5
constant_current_step = BiologicMbToMaccorProcedure._create_step(
seq, seq_num_by_step_num, seq_num_is_non_empty_loop_start,
end_step_num)
expected_constant_current_step = {
"StepType": "Dischrge",
"StepMode": "Current ",
"StepValue": "100.00E-6",
"Limits": "",
"Ends": {
"EndEntry": [{
"EndType": "Voltage ",
"SpecialType": " ",
"Oper": ">= ",
"Step": "005",
"Value": "4.4",
}],
},
"Reports": {
"ReportEntry": [{
"ReportType": "Current ",
"Value": "2.2"
}]
},
"Range": "4",
"Option1": "N",
"Option2": "N",
"Option3": "N",
"StepNote": "",
}
self._test_step_helper(expected_constant_current_step,
constant_current_step)
def test_convert_voltage(self):
self.assertEqual(
BiologicMbToMaccorProcedure._convert_voltage("4.57", "V", "rec2_unit", 2),
"4.57",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_voltage("4.57", "mV", "rec2_unit", 2),
"4.57E-3",
)
# wrong unit
self.assertRaises(
Exception,
BiologicMbToMaccorProcedure._convert_voltage,
"4.57",
"mA",
"rec2_unit",
2,
)
def test_convert_power(self):
self.assertEqual(
BiologicMbToMaccorProcedure._convert_power("0.560", "W", "rec1_unit", 1),
"0.560",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_power("0.560", "mW", "rec1_unit", 1),
"0.560E-3",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_power(
"0.560", "\N{Greek Small Letter Mu}W", "rec1_unit", 1
),
"0.560E-6",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_power(
"0.560", "\N{Micro Sign}W", "rec1_unit", 1
),
"0.560E-6",
)
def test_convert_time(self):
self.assertEqual(
BiologicMbToMaccorProcedure._convert_time("1", "h", "lim3_unit",
1),
"1:00:00",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_time("56", "mn", "lim3_unit",
1),
"00:56:00",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_time("1.5", "s", "lim3_unit",
1),
"00:00:1.5",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_time("10", "ms", "lim3_unit",
1),
"00:00:0.01",
)
# too much specificity for maccor to handle
self.assertRaises(
Exception,
BiologicMbToMaccorProcedure._convert_time,
"1",
"ms",
"lim3_unit",
1,
)
self.assertRaises(
Exception,
BiologicMbToMaccorProcedure._convert_time,
"4.57",
"mV",
"rec2_unit",
1,
)
def test_convert_resistance(self):
self.assertEqual(
BiologicMbToMaccorProcedure._convert_resistance(
"1.32", "MOhm", "lim3_unit", 1
),
"1.32E6",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_resistance(
"1.32", "kOhm", "lim3_unit", 1
),
"1.32E3",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_resistance(
"1.32", "Ohm", "lim3_unit", 1
),
"1.32",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_resistance(
"1.32", "mOhm", "lim3_unit", 1
),
"1.32E-3",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_resistance(
"1.32", "\N{Greek Small Letter Mu}Ohm", "lim3_unit", 1
),
"1.32E-6",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_resistance(
"1.32", "\N{Micro Sign}Ohm", "lim3_unit", 1
),
"1.32E-6",
)
self.assertRaises(
Exception,
BiologicMbToMaccorProcedure._convert_resistance,
"4.57",
"mV",
"rec2_unit",
1,
)
def test_convert_current(self):
self.assertEqual(
BiologicMbToMaccorProcedure._convert_current(
"2.11", "A", "lim3_unit", 1),
"2.11",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_current(
"2.11", "mA", "lim3_unit", 1),
"2.11E-3",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_current(
"2.11", "\N{Greek Small Letter Mu}A", "lim3_unit", 1),
"2.11E-6",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_current(
"2.11", "\N{Micro Sign}A", "lim3_unit", 1),
"2.11E-6",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_current(
"2.11", "nA", "lim3_unit", 1),
"2.11E-9",
)
self.assertEqual(
BiologicMbToMaccorProcedure._convert_current(
"2.11", "pA", "lim3_unit", 1),
"2.11E-12",
)
self.assertRaises(
Exception,
BiologicMbToMaccorProcedure._convert_current,
"4.57",
"mV",
"rec2_unit",
1,
)