def __call__(self):
if 'submitted' in self.request:
self.items = self.context.objectValues()
self.pricelist_content = self.lineitems_pt()
portal = context.portal_url.getPortalObject()
lab = context.bika_labinfo.laboratory
request = context.REQUEST
ar_query_results = portal.portal_mailtemplates.getTemplate(
'bika', request.mail_template)
headers = {}
headers['Date'] = DateTime().rfc822()
from_addr = headers['From'] = formataddr(
(encode_header(lab.Title()), lab.getEmailAddress())
)
if 'Contact_email_address' in request:
contact_address = request.Contact_email_address
msg = 'portal_status_message=Pricelist sent to %s' % (
contact_address)
else:
contact = context.reference_catalog.lookupObject(request.Contact_uid)
contact_address = formataddr(
(encode_header(contact.getFullname()),
contact.getEmailAddress())
)
msg = 'portal_status_message=Pricelist sent to %s at %s' % (
contact.Title(), contact.getEmailAddress())
to_addrs = []
to_addr = headers['To'] = contact_address
to_addrs.append(to_addr)
# send copy to lab
to_addrs.append(from_addr)
to_addrs = tuple(to_addrs)
info = {'request': request,
'pricelist': context,
'portal': portal}
message = pmt.createMessage(
'bika', request.mail_template, info, headers, text_format='html')
sendmail(portal, from_addr, to_addrs, message)
request.RESPONSE.redirect('%s?%s' % (context.absolute_url(), msg))
return self.template()
else:
return self.form_template()
def __call__(self):
if 'submitted' in self.request:
self.items = self.context.objectValues()
self.pricelist_content = self.lineitems_pt()
portal = context.portal_url.getPortalObject()
lab = context.bika_labinfo.laboratory
request = context.REQUEST
ar_query_results = portal.portal_mailtemplates.getTemplate(
'bika', request.mail_template)
headers = {}
headers['Date'] = DateTime().rfc822()
from_addr = headers['From'] = formataddr(
(encode_header(lab.Title()), lab.getEmailAddress()))
if 'Contact_email_address' in request:
contact_address = request.Contact_email_address
msg = 'portal_status_message=Pricelist sent to %s' % (
contact_address)
else:
contact = context.reference_catalog.lookupObject(
request.Contact_uid)
contact_address = formataddr(
(encode_header(contact.getFullname()),
contact.getEmailAddress()))
msg = 'portal_status_message=Pricelist sent to %s at %s' % (
contact.Title(), contact.getEmailAddress())
to_addrs = []
to_addr = headers['To'] = contact_address
to_addrs.append(to_addr)
# send copy to lab
to_addrs.append(from_addr)
to_addrs = tuple(to_addrs)
info = {'request': request, 'pricelist': context, 'portal': portal}
message = pmt.createMessage('bika',
request.mail_template,
info,
headers,
text_format='html')
sendmail(portal, from_addr, to_addrs, message)
request.RESPONSE.redirect('%s?%s' % (context.absolute_url(), msg))
return self.template()
else:
return self.form_template()
def workflow_script_ship(self):
#send the email
lab = self.bika_setup.laboratory
sender = formataddr((encode_header(lab.getName()), self.getFromEmailAddress()))
client = self.getClient()
receiver = formataddr((encode_header(client.getName()), self.getToEmailAddress()))
subject = "Samples Shipped"
body = "Automatic email:\n"
body += 'The samples \"%s\" has been shipped.' % self.getStringified(self.getSamplesList())
self.send_mail(sender, receiver, subject, body)
self.free_storage_locations()
def sendAlertEmail(self):
# Send an alert email
laboratory = self.context.bika_setup.laboratory
subject = self.request.get('subject')
to = self.request.get('to')
body = self.request.get('body')
body = "<br/>".join(body.split("\r\n"))
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = subject
mime_msg['From'] = formataddr((encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = to
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'), _subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
succeed = False
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception, msg:
ar = self.context.id
logger.error("Panic level email %s: %s" % (ar, str(msg)))
message = _('Unable to send an email to alert client '
'that some results exceeded the panic levels') \
+ (": %s" % str(msg))
self.addMessage(message, 'warning')
def sendAlertEmail(self):
# Send an alert email
laboratory = self.context.bika_setup.laboratory
subject = self.request.get('subject')
to = self.request.get('to')
body = self.request.get('body')
body = "<br/>".join(body.split("\r\n"))
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = subject
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = to
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'),
_subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
succeed = False
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception, msg:
ar = self.context.id
logger.error("Panic level email %s: %s" % (ar, str(msg)))
message = _('Unable to send an email to alert client '
'that some results exceeded the panic levels') \
+ (": %s" % str(msg))
self.addMessage(message, 'warning')
def workflow_script_dispatch_shipment(self):
"""executed after shipment state transition "dispatch"
"""
# free positions kits occupy
kits = self.getKits()
w_tool = getToolByName(self, 'portal_workflow')
for kit in kits:
kit.setStorageLocation('')
w_tool.doActionFor(kit, 'ship')
kit.reindexObject()
# Set shipment's date dispatched
now = DateTime()
self.setDateDispatched(now)
to_contact = self.getToContact()
from_contact = self.getFromContact()
client = to_contact.aq_parent
lab = self.bika_setup.laboratory
subject = "Kits dispatched from {}".format(lab.getName())
sender = formataddr((lab.getName(), from_contact.getEmailAddress()))
receiver = formataddr((encode_header(client.getName()), to_contact.getEmailAddress()))
body = "Automatic email:\n"
body += 'The shipment \"%s\" has been sent from the Biobank \"%s\".' % (self.Title(), lab.getName())
self.send_mail(sender, receiver, subject, body)
def send_panic_email(view):
ar = view.context
if not IAnalysisRequest.providedBy(ar):
return False
if not ar.has_analyses_in_panic():
addMessage(view, _("No results exceed the panic levels"), 'warning')
return False
# Send an alert email
laboratory = view.context.bika_setup.laboratory
subject = view.request.get('subject')
to = view.request.get('to')
body = view.request.get('email_body')
body = "<br/>".join(body.split("\r\n"))
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = subject
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = to
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'), _subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(view.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception, msg:
ar = view.context.id
logger.error("Panic level email %s: %s" % (ar, str(msg)))
message = _('Unable to send an email to alert client '
'that some results exceeded the panic levels') \
+ (": %s" % str(msg))
addMessage(view, message, 'warning')
return False
def send_panic_email(self):
# Send an alert email
setup = api.get_setup()
laboratory = setup.laboratory
subject = self.request.get('subject')
to = self.request.get('to')
body = self.request.get('email_body')
body = "<br/>".join(body.split("\r\n"))
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = subject
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = to
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'), _subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = api.get_tool("MailHost")
host.send(mime_msg.as_string(), immediate=True)
except Exception, msg:
sample_id = api.get_id(self.sample)
logger.error("Panic level email %s: %s" % (sample_id, str(msg)))
message = _("Unable to send an email to alert client "
"that some results exceeded the panic levels")
message = "{}: {}".format(message, str(msg))
return self.redirect(self.back_url, message, "warning")
def emailInvoice(self, templateHTML, to=[]):
"""
Send the invoice via email.
:param templateHTML: The invoice template in HTML, ready to be send.
:param to: A list with the addresses to send the invoice.
"""
ar = self.aq_parent
# SMTP errors are silently ignored if server is in debug mode
debug_mode = App.config.getConfiguration().debug_mode
# Useful variables
lab = ar.bika_setup.laboratory
# Compose and send email.
subject = t(_('Invoice')) + ' ' + ar.getInvoice().getId()
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = subject
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt_t = MIMEText(templateHTML.encode('utf-8'), _subtype='html')
mime_msg.attach(msg_txt_t)
# Build the responsible's addresses
mngrs = ar.getResponsible()
for mngrid in mngrs['ids']:
name = mngrs['dict'][mngrid].get('name', '')
email = mngrs['dict'][mngrid].get('email', '')
if (email != ''):
to.append(formataddr((encode_header(name), email)))
# Build the client's address
caddress = ar.aq_parent.getEmailAddress()
cname = ar.aq_parent.getName()
if (caddress != ''):
to.append(formataddr((encode_header(cname), caddress)))
if len(to) > 0:
# Send the emails
mime_msg['To'] = ','.join(to)
try:
host = getToolByName(ar, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
pass
if not debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
def emailInvoice(self, templateHTML, to=[]):
"""
Send the invoice via email.
:param templateHTML: The invoice template in HTML, ready to be send.
:param to: A list with the addresses to send the invoice.
"""
ar = self.aq_parent
# SMTP errors are silently ignored if server is in debug mode
debug_mode = App.config.getConfiguration().debug_mode
# Useful variables
lab = ar.bika_setup.laboratory
# Compose and send email.
subject = t(_('Invoice')) + ' ' + ar.getInvoice().getId()
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = subject
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt_t = MIMEText(templateHTML.encode('utf-8'), _subtype='html')
mime_msg.attach(msg_txt_t)
# Build the responsible's addresses
mngrs = ar.getResponsible()
for mngrid in mngrs['ids']:
name = mngrs['dict'][mngrid].get('name', '')
email = mngrs['dict'][mngrid].get('email', '')
if (email != ''):
to.append(formataddr((encode_header(name), email)))
# Build the client's address
caddress = ar.aq_parent.getEmailAddress()
cname = ar.aq_parent.getName()
if (caddress != ''):
to.append(formataddr((encode_header(cname), caddress)))
if len(to) > 0:
# Send the emails
mime_msg['To'] = ','.join(to)
try:
host = getToolByName(ar, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
pass
if not debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
def workflow_script_ready_to_ship(self):
#send the email
lab = self.bika_setup.laboratory
sender = formataddr((encode_header(lab.getName()), self.getFromEmailAddress()))
client = self.getClient()
receiver = formataddr((encode_header(client.getName()), self.getToEmailAddress()))
samples_text = self.getStringified(self.getSamplesList())
subject = "Samples ready to ship"
body = "Automatic email:\n"
body += 'The samples \"%s\" are ready to ship.' % samples_text
# print('------------')
# print(sender)
# print(receiver)
# print(body)
self.send_mail(sender, receiver, subject, body)
def workflow_script_collect(self):
"""executed after shipment state transition to collect
"""
to_contact = self.getToContact()
from_contact = self.getFromContact()
client = to_contact.aq_parent
subject = "Shipment ready for collection"
sender = formataddr((encode_header(client.getName()), to_contact.getEmailAddress()))
lab = self.bika_setup.laboratory
receiver = formataddr((lab.getName(), from_contact.getEmailAddress()))
body = "Automatic email:\n"
body += '\"%s\" sent to client \"%s\" ready for collection.' % (self.Title(), client.getName())
self.send_mail(sender, receiver, subject, body)
def workflow_script_receive_back(self):
""" Executed after shipment received back by the biobank
"""
to_contact = self.getToContact()
from_contact = self.getFromContact()
client = to_contact.aq_parent
subject = "Shipment reached the Biobank"
lab = self.bika_setup.laboratory
sender = formataddr((lab.getName(), from_contact.getEmailAddress()))
receiver = formataddr((encode_header(client.getName()), to_contact.getEmailAddress()))
body = "Automatic email:\n"
body += 'The shipment \"%s\" sent back is arrived at the Biobank \"%s\".' % (self.Title(), lab.getName())
self.send_mail(sender, receiver, subject, body)
def workflow_script_collect(self):
""" Executed after shipment ready for collection from the client
"""
to_contact = self.getToContact()
from_contact = self.getFromContact()
client = to_contact.aq_parent
subject = "Shipment ready for collection"
sender = formataddr((encode_header(client.getName()), to_contact.getEmailAddress()))
lab = self.bika_setup.laboratory
receiver = formataddr((lab.getName(), from_contact.getEmailAddress()))
body = "Automatic email:\n"
body += 'The shipment \"%s\" sent to the client \"%s\" is ready for collection.' % (self.Title(), client.getName())
self.send_mail(sender, receiver, subject, body)
def sendEmail(self):
added = []
to = ''
for analysis in self.analyses:
department = analysis.getService().getDepartment()
if department is None:
continue
department_id = department.UID()
if department_id in added:
continue
added.append(department_id)
manager = department.getManager()
if manager is None:
continue
manager_id = manager.UID()
if manager_id not in added and manager.getEmailAddress():
added.append(manager_id)
name = safe_unicode(manager.getFullname()).encode('utf-8')
email = safe_unicode(manager.getEmailAddress()).encode('utf-8')
to = '%s, %s' % (to, formataddr((encode_header(name), email)))
html = safe_unicode(self.template()).encode('utf-8')
lab = self.context.bika_setup.laboratory
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.title
mime_msg['From'] = formataddr(
(encode_header(lab.getName()),
lab.getEmailAddress()))
mime_msg['To'] = to
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(html, _subtype='html')
mime_msg.attach(msg_txt)
# Send the email
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
def sendEmail(self):
added = []
to = ''
for analysis in self.analyses:
department = analysis.getService().getDepartment()
if department is None:
continue
department_id = department.UID()
if department_id in added:
continue
added.append(department_id)
manager = department.getManager()
if manager is None:
continue
manager_id = manager.UID()
if manager_id not in added and manager.getEmailAddress():
added.append(manager_id)
name = safe_unicode(manager.getFullname()).encode('utf-8')
email = safe_unicode(manager.getEmailAddress()).encode('utf-8')
to = '%s, %s' % (to, formataddr((encode_header(name), email)))
html = safe_unicode(self.template()).encode('utf-8')
lab = self.context.bika_setup.laboratory
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.title
mime_msg['From'] = formataddr(
(encode_header(lab.getName()),
lab.getEmailAddress()))
mime_msg['To'] = to
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(html, _subtype='html')
mime_msg.attach(msg_txt)
# Send the email
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
def workflow_script_receive_shipment(self):
"""executed after shipment state transition to received
"""
to_contact = self.getToContact()
from_contact = self.getFromContact()
client = to_contact.aq_parent
subject = "Shipment Received"
sender = formataddr(
(encode_header(client.getName()), to_contact.getEmailAddress()))
lab = self.bika_setup.laboratory
receiver = formataddr((lab.getName(), from_contact.getEmailAddress()))
body = "Automatic email:\n"
body += '\"%s\" sent to client \"%s\" has been received.' % (
self.Title(), client.getName())
self.send_mail(sender, receiver, subject, body)
def emailInvoice(self, templateHTML, to=[]):
"""
Add the patient's insurance number in the receivers
:param templateHTML: the html to render. We override it.
:param to: the list with the receivers. Void in this case.
"""
# Check if the patient's "Send invoices to the insurance company" checkbox is checked.
sendtoinsurance = self.context.Schema()['Patient'].get(self.context).getInvoiceToInsuranceCompany()
if sendtoinsurance:
# Obtains the insurance company object
insurancecompany = self.context.Schema()['Patient'].get(self.context).getInsuranceCompany()
# Build the insurance company's address
icaddress = insurancecompany.getEmailAddress()
icname = insurancecompany.getName()
if (icaddress != ''):
to.append(formataddr((encode_header(icname), icaddress)))
super(InvoiceCreate, self).emailInvoice(templateHTML, to)
def emailInvoice(self, templateHTML, to=[]):
"""
Add the patient's insurance number in the receivers
:param templateHTML: the html to render. We override it.
:param to: the list with the receivers. Void in this case.
"""
# Check if the patient's "Send invoices to the insurance company" checkbox is checked.
sendtoinsurance = self.context.Schema()['Patient'].get(
self.context).getInvoiceToInsuranceCompany()
if sendtoinsurance:
# Obtains the insurance company object
insurancecompany = self.context.Schema()['Patient'].get(
self.context).getInsuranceCompany()
# Build the insurance company's address
icaddress = insurancecompany.getEmailAddress()
icname = insurancecompany.getName()
if (icaddress != ''):
to.append(formataddr((encode_header(icname), icaddress)))
super(InvoiceCreate, self).emailInvoice(templateHTML, to)
def workflow_action_retract_ar(self):
workflow = getToolByName(self.context, 'portal_workflow')
# AR should be retracted
# Can't transition inactive ARs
if not isActive(self.context):
message = _('Item is inactive.')
self.context.plone_utils.addPortalMessage(message, 'info')
self.request.response.redirect(self.context.absolute_url())
return
# 1. Copies the AR linking the original one and viceversa
ar = self.context
newar = self.cloneAR(ar)
# 2. The old AR gets a status of 'invalid'
workflow.doActionFor(ar, 'retract_ar')
# 3. The new AR copy opens in status 'to be verified'
changeWorkflowState(newar, 'bika_ar_workflow', 'to_be_verified')
# 4. The system immediately alerts the client contacts who ordered
# the results, per email and SMS, that a possible mistake has been
# picked up and is under investigation.
# A much possible information is provided in the email, linking
# to the AR online.
laboratory = self.context.bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = t(_("Erroneus result publication from ${request_id}",
mapping={"request_id": ar.getRequestID()}))
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
contact = ar.getContact()
if contact:
to.append(formataddr((encode_header(contact.Title()),
contact.getEmailAddress())))
for cc in ar.getCCContact():
formatted = formataddr((encode_header(cc.Title()),
cc.getEmailAddress()))
if formatted not in to:
to.append(formatted)
managers = self.context.portal_groups.getGroupMembers('LabManagers')
for bcc in managers:
user = self.portal.acl_users.getUser(bcc)
if user:
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
formatted = formataddr((encode_header(ufull), uemail))
if formatted not in to:
to.append(formatted)
mime_msg['To'] = ','.join(to)
aranchor = "<a href='%s'>%s</a>" % (ar.absolute_url(),
ar.getRequestID())
naranchor = "<a href='%s'>%s</a>" % (newar.absolute_url(),
newar.getRequestID())
addremarks = ('addremarks' in self.request
and ar.getRemarks()) \
and ("<br/><br/>"
+ _("Additional remarks:")
+ "<br/>"
+ ar.getRemarks().split("===")[1].strip()
+ "<br/><br/>") \
or ''
sub_d = dict(request_link=aranchor,
new_request_link=naranchor,
remarks=addremarks,
lab_address=lab_address)
body = Template("Some errors have been detected in the results report "
"published from the Analysis Request $request_link. The Analysis "
"Request $new_request_link has been created automatically and the "
"previous has been invalidated.<br/>The possible mistake "
"has been picked up and is under investigation.<br/><br/>"
"$remarks $lab_address").safe_substitute(sub_d)
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'),
_subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
message = _('Unable to send an email to alert lab '
'client contacts that the Analysis Request has been '
'retracted: ${error}',
mapping={'error': safe_unicode(msg)})
self.context.plone_utils.addPortalMessage(message, 'warning')
message = _('${items} invalidated.',
mapping={'items': ar.getRequestID()})
self.context.plone_utils.addPortalMessage(message, 'warning')
self.request.response.redirect(newar.absolute_url())
def notify_rejection(analysisrequest):
"""
Notifies via email that a given Analysis Request has been rejected. The
notification is sent to the Client contacts assigned to the Analysis
Request.
:param analysisrequest: Analysis Request to which the notification refers
:returns: true if success
"""
arid = analysisrequest.getRequestID()
# This is the template to render for the pdf that will be either attached
# to the email and attached the the Analysis Request for further access
from bika.lims.browser.analysisrequest.reject import AnalysisRequestRejectPdfView
tpl = AnalysisRequestRejectPdfView(analysisrequest, analysisrequest.REQUEST)
html = tpl.template()
html = safe_unicode(html).encode('utf-8')
filename = '%s-rejected' % arid
pdf_fn = tempfile.mktemp(suffix=".pdf")
pdf = createPdf(htmlreport=html, outfile=pdf_fn)
if pdf:
# Attach the pdf to the Analysis Request
attid = analysisrequest.aq_parent.generateUniqueId('Attachment')
att = _createObjectByType("Attachment", analysisrequest.aq_parent, tmpID())
att.setAttachmentFile(open(pdf_fn))
# Awkward workaround to rename the file
attf = att.getAttachmentFile()
attf.filename = '%s.pdf' % filename
att.setAttachmentFile(attf)
att.unmarkCreationFlag()
renameAfterCreation(att)
atts = analysisrequest.getAttachment() + [att] if \
analysisrequest.getAttachment() else [att]
atts = [a.UID() for a in atts]
analysisrequest.setAttachment(atts)
os.remove(pdf_fn)
# This is the message for the email's body
from bika.lims.browser.analysisrequest.reject import AnalysisRequestRejectEmailView
tpl = AnalysisRequestRejectEmailView(analysisrequest, analysisrequest.REQUEST)
html = tpl.template()
html = safe_unicode(html).encode('utf-8')
# compose and send email.
mailto = []
lab = analysisrequest.bika_setup.laboratory
mailfrom = formataddr((encode_header(lab.getName()), lab.getEmailAddress()))
mailsubject = _('%s has been rejected') % arid
contacts = [analysisrequest.getContact()] + analysisrequest.getCCContact()
for contact in contacts:
name = to_utf8(contact.getFullname())
email = to_utf8(contact.getEmailAddress())
if email:
mailto.append(formataddr((encode_header(name), email)))
if not mailto:
return False
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = mailsubject
mime_msg['From'] = mailfrom
mime_msg['To'] = ','.join(mailto)
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(html, _subtype='html')
mime_msg.attach(msg_txt)
if pdf:
attachPdf(mime_msg, pdf, filename)
try:
host = getToolByName(analysisrequest, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except:
pass
return True
def notify_ar_retract(self, ar, newar):
bika_setup = api.get_bika_setup()
laboratory = bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = t(
_("Erroneus result publication from ${request_id}",
mapping={"request_id": ar.getId()}))
mime_msg['From'] = formataddr((encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
contact = ar.getContact()
if contact:
to.append(
formataddr((encode_header(contact.Title()),
contact.getEmailAddress())))
for cc in ar.getCCContact():
formatted = formataddr(
(encode_header(cc.Title()), cc.getEmailAddress()))
if formatted not in to:
to.append(formatted)
managers = self.context.portal_groups.getGroupMembers('LabManagers')
for bcc in managers:
user = self.portal.acl_users.getUser(bcc)
if user:
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
formatted = formataddr((encode_header(ufull), uemail))
if formatted not in to:
to.append(formatted)
mime_msg['To'] = ','.join(to)
aranchor = "<a href='%s'>%s</a>" % (ar.absolute_url(), ar.getId())
naranchor = "<a href='%s'>%s</a>" % (newar.absolute_url(),
newar.getId())
addremarks = ('addremarks' in self.request and ar.getRemarks()) and (
"<br/><br/>" + _("Additional remarks:") + "<br/>" +
ar.getRemarks().split("===")[1].strip() + "<br/><br/>") or ''
sub_d = dict(request_link=aranchor,
new_request_link=naranchor,
remarks=addremarks,
lab_address=lab_address)
body = Template(
"Some errors have been detected in the results report "
"published from the Analysis Request $request_link. The Analysis "
"Request $new_request_link has been created automatically and the "
"previous has been invalidated.<br/>The possible mistake "
"has been picked up and is under investigation.<br/><br/>"
"$remarks $lab_address").safe_substitute(sub_d)
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'), _subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
message = _(
'Unable to send an email to alert lab '
'client contacts that the Analysis Request has been '
'retracted: ${error}',
mapping={'error': safe_unicode(msg)})
self.context.plone_utils.addPortalMessage(message, 'warning')
def notify_rejection(analysisrequest):
"""
Notifies via email that a given Analysis Request has been rejected. The
notification is sent to the Client contacts assigned to the Analysis
Request.
:param analysisrequest: Analysis Request to which the notification refers
:returns: true if success
"""
arid = analysisrequest.getRequestID()
# This is the template to render for the pdf that will be either attached
# to the email and attached the the Analysis Request for further access
from bika.lims.browser.analysisrequest.reject import AnalysisRequestRejectPdfView
tpl = AnalysisRequestRejectPdfView(analysisrequest,
analysisrequest.REQUEST)
html = tpl.template()
html = safe_unicode(html).encode('utf-8')
filename = '%s-rejected' % arid
pdf_fn = tempfile.mktemp(suffix=".pdf")
pdf_success = createPdf(html, pdf_fn)
pdf_data = None
if pdf_success:
# Attach the pdf to the Analysis Request
pdf_data = open(pdf_fn, 'rb').read()
attid = analysisrequest.aq_parent.generateUniqueId('Attachment')
att = _createObjectByType("Attachment", analysisrequest.aq_parent,
tmpID())
att.setAttachmentFile(open(pdf_fn))
# Awkward workaround to rename the file
attf = att.getAttachmentFile()
attf.filename = '%s.pdf' % filename
att.setAttachmentFile(attf)
att.unmarkCreationFlag()
renameAfterCreation(att)
atts = analysisrequest.getAttachment() + [att] if \
analysisrequest.getAttachment() else [att]
atts = [a.UID() for a in atts]
analysisrequest.setAttachment(atts)
os.remove(pdf_fn)
# This is the message for the email's body
from bika.lims.browser.analysisrequest.reject import AnalysisRequestRejectEmailView
tpl = AnalysisRequestRejectEmailView(analysisrequest,
analysisrequest.REQUEST)
html = tpl.template()
html = safe_unicode(html).encode('utf-8')
# compose and send email.
mailto = []
lab = analysisrequest.bika_setup.laboratory
mailfrom = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mailsubject = _('%s has been rejected') % arid
contacts = [analysisrequest.getContact()] + analysisrequest.getCCContact()
for contact in contacts:
name = to_utf8(contact.getFullname())
email = to_utf8(contact.getEmailAddress())
if email:
mailto.append(formataddr((encode_header(name), email)))
if not mailto:
return False
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = mailsubject
mime_msg['From'] = mailfrom
mime_msg['To'] = ','.join(mailto)
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(html, _subtype='html')
mime_msg.attach(msg_txt)
if pdf_success:
attachPdf(mime_msg, pdf_data, filename)
try:
host = getToolByName(analysisrequest, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except:
pass
return True
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, 'portal_workflow')
laboratory = self.context.bika_setup.laboratory
BatchEmail = self.context.bika_setup.getBatchEmail()
BatchFax = self.context.bika_setup.getBatchFax()
# group analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = 'email' in self.pub_pref and BatchEmail or \
'fax' in self.pub_pref and BatchFax or 1
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b:b+batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True,
review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryName()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
self.services[poc][cat].append(service)
if (service.getAccredited()):
self.any_accredited = True
# compose and send email
if 'email' in self.pub_pref:
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject()
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = formataddr(
(encode_header(self.contact.getFullname()),
self.contact.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
ar_results = self.ar_results()
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
#XXX
open(join(Globals.INSTANCE_HOME,'var','ar_results.html'),
"w").write(ar_results)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == 'publish':
for ar in self.batch:
try:
workflow.doActionFor(ar, 'publish')
except WorkflowException:
pass
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def __call__(self):
workflow = getToolByName(self.context, 'portal_workflow')
# SMTP errors are silently ignored if server is in debug mode
self.debug_mode = App.config.getConfiguration().debug_mode
# PDF and HTML files are written to disk if server is in debug mode
self.out_path = join(Globals.INSTANCE_HOME, 'var') if self.debug_mode \
else None
self._get_user_attributes()
self._get_lab_attributes()
# This for loop prints each AR individually to a PDF stored in the AR,
# and sends whatever publication is required
for ar_nr, ar in enumerate(self.analysis_requests):
self.any_drymatter = ar.getReportDryMatter()
self._get_ar_attributes(ar)
self._get_client_attribues(ar)
self._get_batch_attributes(ar)
self._get_sample_attributes(ar)
self._get_contact_attributes(ar)
self._get_categorized_services(ar)
self._get_categorized_qcservices(ar)
self.Footer = to_utf8(self.context.bika_setup.getResultFooter())
out_fn = to_utf8(ar.Title())
# Create the html report
ar_results = safe_unicode(self.template()).encode('utf-8')
if self.out_path:
open(join(self.out_path, out_fn + ".html"), "w").write(ar_results)
# Create the pdf report (will always be attached to the AR)
pdf_outfile = join(self.out_path,
out_fn + ".pdf") if self.out_path else None
pdf_css = resource_filename(
"bika.lims", "skins/bika/analysisrequest_results_pdf.css")
ar_css = join(self.portal_url, "analysisrequest_results.css")
ar_results = ar_results.replace(ar_css, pdf_css)
pdf_report = createPdf(ar_results, pdf_outfile, css=pdf_css)
if self.contact['obj']:
recipients = [{
'UID': self.contact['obj'].UID(),
'Username': to_utf8(self.contact['obj'].getUsername()),
'Fullname': to_utf8(self.contact['obj'].getFullname()),
'EmailAddress': to_utf8(self.contact['obj'].getEmailAddress()),
'PublicationModes': self.contact['obj'].getPublicationPreference()
}]
else:
recipients = []
if pdf_report:
reportid = self.context.generateUniqueId('ARReport')
report = _createObjectByType("ARReport", ar, reportid)
report.edit(
AnalysisRequest=ar.UID(),
Pdf=pdf_report,
Html=ar_results,
Recipients=recipients
)
report.unmarkCreationFlag()
from bika.lims.idserver import renameAfterCreation
renameAfterCreation(report)
# Set status to published
if self.action == 'publish':
try:
workflow.doActionFor(ar, 'publish')
except WorkflowException:
pass
# compose and send email.
# The managers of the departments for which the current AR has
# at least one AS must receive always the pdf report by email.
# https://github.com/bikalabs/Bika-LIMS/issues/1028
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(self.laboratory['obj'].getName()),
self.laboratory['obj'].getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
to = []
mngrs = ar.getResponsible()
for mngrid in mngrs['ids']:
name = mngrs['dict'][mngrid].get('name', '')
email = mngrs['dict'][mngrid].get('email', '')
if (email != ''):
to.append(formataddr((encode_header(name), email)))
if len(to) > 0:
# Send the email to the managers
mime_msg['To'] = ','.join(to)
attachPdf(mime_msg, pdf_report, out_fn)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
pass
if not self.debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
to = []
# Send report to recipients
recips = self.get_recipients(ar)
for recip in recips:
if 'email' not in recip.get('pubpref', []) \
or not recip.get('email', ''):
continue
title = encode_header(recip.get('title', ''))
email = recip.get('email')
formatted = formataddr((title, email))
# Create the new mime_msg object, cause the previous one
# has the pdf already attached
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(self.laboratory['obj'].getName()),
self.laboratory['obj'].getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
mime_msg['To'] = formatted
# Attach the pdf to the email if requested
if pdf_report and 'pdf' in recip.get('pubpref'):
attachPdf(mime_msg, pdf_report, out_fn)
# For now, I will simply ignore mail send under test.
if hasattr(self.portal, 'robotframework'):
continue
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
if not self.debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
return [ar.RequestID for ar in self.analysis_requests]
def publishFromHTML(self, aruid, results_html):
# The AR can be published only and only if allowed
uc = getToolByName(self.context, 'uid_catalog')
ars = uc(UID=aruid)
if not ars or len(ars) != 1:
return []
ar = ars[0].getObject();
wf = getToolByName(ar, 'portal_workflow')
allowed_states = ['verified', 'published']
# Publish/Republish allowed?
if wf.getInfoFor(ar, 'review_state') not in allowed_states:
# Pre-publish allowed?
if not ar.getAnalyses(review_state=allowed_states):
return []
# HTML written to debug file
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".html")
logger.debug("Writing HTML for %s to %s" % (ar.Title(), tmp_fn))
open(tmp_fn, "wb").write(results_html)
# Create the pdf report (will always be attached to the AR)
# we must supply the file ourself so that createPdf leaves it alone.
pdf_fn = tempfile.mktemp(suffix=".pdf")
pdf_report = createPdf(htmlreport=results_html, outfile=pdf_fn)
# PDF written to debug file
if debug_mode:
logger.debug("Writing PDF for %s to %s" % (ar.Title(), pdf_fn))
else:
os.remove(pdf_fn)
recipients = []
contact = ar.getContact()
lab = ar.bika_setup.laboratory
if pdf_report:
if contact:
recipients = [{
'UID': contact.UID(),
'Username': to_utf8(contact.getUsername()),
'Fullname': to_utf8(contact.getFullname()),
'EmailAddress': to_utf8(contact.getEmailAddress()),
'PublicationModes': contact.getPublicationPreference()
}]
reportid = ar.generateUniqueId('ARReport')
report = _createObjectByType("ARReport", ar, reportid)
report.edit(
AnalysisRequest=ar.UID(),
Pdf=pdf_report,
Html=results_html,
Recipients=recipients
)
report.unmarkCreationFlag()
renameAfterCreation(report)
# Set status to prepublished/published/republished
status = wf.getInfoFor(ar, 'review_state')
transitions = {'verified': 'publish',
'published' : 'republish'}
transition = transitions.get(status, 'prepublish')
try:
wf.doActionFor(ar, transition)
except WorkflowException:
pass
# compose and send email.
# The managers of the departments for which the current AR has
# at least one AS must receive always the pdf report by email.
# https://github.com/bikalabs/Bika-LIMS/issues/1028
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
to = []
mngrs = ar.getResponsible()
for mngrid in mngrs['ids']:
name = mngrs['dict'][mngrid].get('name', '')
email = mngrs['dict'][mngrid].get('email', '')
if (email != ''):
to.append(formataddr((encode_header(name), email)))
if len(to) > 0:
# Send the email to the managers
mime_msg['To'] = ','.join(to)
attachPdf(mime_msg, pdf_report, pdf_fn)
try:
host = getToolByName(ar, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
# Send report to recipients
recips = self.get_recipients(ar)
for recip in recips:
if 'email' not in recip.get('pubpref', []) \
or not recip.get('email', ''):
continue
title = encode_header(recip.get('title', ''))
email = recip.get('email')
formatted = formataddr((title, email))
# Create the new mime_msg object, cause the previous one
# has the pdf already attached
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
mime_msg['To'] = formatted
# Attach the pdf to the email if requested
if pdf_report and 'pdf' in recip.get('pubpref'):
attachPdf(mime_msg, pdf_report, pdf_fn)
# For now, I will simply ignore mail send under test.
if hasattr(self.portal, 'robotframework'):
continue
msg_string = mime_msg.as_string()
# content of outgoing email written to debug file
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".email")
logger.debug("Writing MIME message for %s to %s" % (ar.Title(), tmp_fn))
open(tmp_fn, "wb").write(msg_string)
try:
host = getToolByName(ar, 'MailHost')
host.send(msg_string, immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
ar.setDatePublished(DateTime())
return [ar]
def publishFromHTML(self, prouid, results_html):
uc = getToolByName(self.context, 'uid_catalog')
pros = uc(UID=prouid)
if not pros or len(pros) != 1:
return []
pro = pros[0].getObject()
# HTML written to debug file
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".html")
logger.debug("Writing HTML for %s to %s" % (pro.Title(), tmp_fn))
open(tmp_fn, "wb").write(results_html)
# Create the pdf report (will always be attached to the Order)
# we must supply the file ourself so that createPdf leaves it alone.
# This version replaces 'attachment' links; probably not required,
# so it's repeated below, without these localise_images.
# cleanup, results_html_for_pdf = self.localise_images(results_html)
# pdf_fn = tempfile.mktemp(suffix=".pdf")
# pdf_report = createPdf(htmlreport=results_html_for_pdf, outfile=pdf_fn)
# for fn in cleanup:
# os.remove(fn)
pdf_fn = tempfile.mktemp(suffix=".pdf")
pdf_report = createPdf(htmlreport=results_html, outfile=pdf_fn)
# PDF written to debug file
if debug_mode:
logger.debug("Writing PDF for %s to %s" % (pro.Title(), pdf_fn))
else:
os.remove(pdf_fn)
recipients = []
# Send report to supplier
supplier_data = self._supplier_data(pro)
title = encode_header(supplier_data.get('title', ''))
email = supplier_data.get('email')
formatted = formataddr((title, email))
# Create the new mime_msg object
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(pro)
"""
Edit this to change the From address
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
"""
mime_msg['From'] = formataddr(("BIKA IMM", "*****@*****.**"))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
mime_msg['To'] = formatted
# Attach the pdf to the email if requested
if pdf_report:
attachPdf(mime_msg, pdf_report, pdf_fn)
msg_string = mime_msg.as_string()
# content of outgoing email written to debug file
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".email")
logger.debug("Writing MIME message for %s to %s" %
(pro.Title(), tmp_fn))
open(tmp_fn, "wb").write(msg_string)
try:
host = getToolByName(pro, 'MailHost')
host.send(msg_string, immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
pro.setDateDispatched(DateTime())
return [pro]
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, 'portal_workflow')
BatchEmail = self.context.bika_setup.getBatchEmail()
username = self.context.portal_membership.getAuthenticatedMember().getUserName()
self.reporter = self.user_fullname(username)
self.reporter_email = self.user_email(username)
# signature image
self.reporter_signature = ""
c = [x for x in self.bika_setup_catalog(portal_type='LabContact')
if x.getObject().getUsername() == username]
if c:
sf = c[0].getObject().getSignature()
if sf:
self.reporter_signature = sf.absolute_url() + "/Signature"
# lab address
self.laboratory = laboratory = self.context.bika_setup.laboratory
lab_address = laboratory.getPostalAddress() \
or laboratory.getBillingAddress() \
or laboratory.getPhysicalAddress()
if lab_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = [lab_address.get(v) for v in _keys]
self.lab_address = "<br/>".join(_list).replace("\n", "<br/>")
else:
self.lab_address = None
# group/publish analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = 'email' in self.pub_pref and BatchEmail or 5
# client address
self.client = ars[0].aq_parent
client_address = self.client.getPostalAddress() \
or self.contact.getBillingAddress() \
or self.contact.getPhysicalAddress()
if client_address:
_keys = ['address', 'city', 'state', 'zip', 'country']
_list = [client_address.get(v) for v in _keys]
self.client_address = "<br/>".join(_list).replace("\n", "<br/>")
else:
self.client_address = None
self.Footer = self.context.bika_setup.getResultFooter()
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b:b+batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
out_fn = "_".join([ar.Title() for ar in self.batch])
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True,
review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryTitle()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
if service not in self.services[poc][cat]:
self.services[poc][cat].append(service)
if (service.getAccredited()):
self.any_accredited = True
# compose and send email
if 'email' in self.pub_pref:
# render template
ar_results = self.ar_results()
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
open(join(Globals.INSTANCE_HOME,'var', out_fn + ".html"),
"w").write(ar_results)
pisa.showLogging()
ramdisk = StringIO()
pdf = pisa.CreatePDF(ar_results, ramdisk)
pdf_data = ramdisk.getvalue()
ramdisk.close()
if debug_mode:
open(join(Globals.INSTANCE_HOME,'var', out_fn + ".pdf"),
"wb").write(pdf_data)
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject()
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = formataddr(
(encode_header(self.contact.getFullname()),
self.contact.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
if not pdf.err:
part = MIMEBase('application', "application/pdf")
part.add_header('Content-Disposition', 'attachment; filename="%s.pdf"' % out_fn)
part.set_payload( pdf_data )
Encoders.encode_base64(part)
mime_msg.attach(part)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected, msg:
if not debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == 'publish':
for ar in self.batch:
try:
workflow.doActionFor(ar, 'publish')
except WorkflowException:
pass
## if not pdf.err:
## setheader = self.request.RESPONSE.setHeader
## setheader('Content-Type', 'application/pdf')
## setheader("Content-Disposition", "attachment;filename=\"%s.pdf\"" % out_fn)
## self.request.RESPONSE.write(pdf_data)
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def publishFromHTML(self, aruid, results_html):
# The AR can be published only and only if allowed
uc = getToolByName(self.context, 'uid_catalog')
ars = uc(UID=aruid)
if not ars or len(ars) != 1:
return []
ar = ars[0].getObject();
wf = getToolByName(ar, 'portal_workflow')
allowed_states = ['verified', 'published']
# Publish/Republish allowed?
if wf.getInfoFor(ar, 'review_state') not in allowed_states:
# Pre-publish allowed?
if not ar.getAnalyses(review_state=allowed_states):
return []
# HTML written to debug file
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".html")
logger.debug("Writing HTML for %s to %s" % (ar.Title(), tmp_fn))
open(tmp_fn, "wb").write(results_html)
# Create the pdf report (will always be attached to the AR)
# we must supply the file ourself so that createPdf leaves it alone.
pdf_fn = tempfile.mktemp(suffix=".pdf")
pdf_report = createPdf(htmlreport=results_html, outfile=pdf_fn)
# PDF written to debug file
if debug_mode:
logger.debug("Writing PDF for %s to %s" % (ar.Title(), pdf_fn))
else:
os.remove(pdf_fn)
recipients = []
contact = ar.getContact()
lab = ar.bika_setup.laboratory
if pdf_report:
if contact:
recipients = [{
'UID': contact.UID(),
'Username': to_utf8(contact.getUsername()),
'Fullname': to_utf8(contact.getFullname()),
'EmailAddress': to_utf8(contact.getEmailAddress()),
'PublicationModes': contact.getPublicationPreference()
}]
reportid = ar.generateUniqueId('ARReport')
report = _createObjectByType("ARReport", ar, reportid)
report.edit(
AnalysisRequest=ar.UID(),
Pdf=pdf_report,
Html=results_html,
Recipients=recipients
)
report.unmarkCreationFlag()
renameAfterCreation(report)
# Set status to prepublished/published/republished
status = wf.getInfoFor(ar, 'review_state')
transitions = {'verified': 'publish',
'published' : 'republish'}
transition = transitions.get(status, 'prepublish')
try:
wf.doActionFor(ar, transition)
except WorkflowException:
pass
# compose and send email.
# The managers of the departments for which the current AR has
# at least one AS must receive always the pdf report by email.
# https://github.com/bikalabs/Bika-LIMS/issues/1028
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
to = []
mngrs = ar.getResponsible()
for mngrid in mngrs['ids']:
name = mngrs['dict'][mngrid].get('name', '')
email = mngrs['dict'][mngrid].get('email', '')
if (email != ''):
to.append(formataddr((encode_header(name), email)))
if len(to) > 0:
# Send the email to the managers
mime_msg['To'] = ','.join(to)
attachPdf(mime_msg, pdf_report, ar.id)
try:
host = getToolByName(ar, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
# Send report to recipients
recips = self.get_recipients(ar)
for recip in recips:
if 'email' not in recip.get('pubpref', []) \
or not recip.get('email', ''):
continue
title = encode_header(recip.get('title', ''))
email = recip.get('email')
formatted = formataddr((title, email))
# Create the new mime_msg object, cause the previous one
# has the pdf already attached
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
mime_msg['To'] = formatted
# Attach the pdf to the email if requested
if pdf_report and 'pdf' in recip.get('pubpref'):
attachPdf(mime_msg, pdf_report, ar.id)
# For now, I will simply ignore mail send under test.
if hasattr(self.portal, 'robotframework'):
continue
msg_string = mime_msg.as_string()
# content of outgoing email written to debug file
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".email")
logger.debug("Writing MIME message for %s to %s" % (ar.Title(), tmp_fn))
open(tmp_fn, "wb").write(msg_string)
try:
host = getToolByName(ar, 'MailHost')
host.send(msg_string, immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
return [ar]
def workflow_action_retract_ar(self):
workflow = getToolByName(self.context, "portal_workflow")
# AR should be retracted
# Can't transition inactive ARs
if not isActive(self.context):
message = _("Item is inactive.")
self.context.plone_utils.addPortalMessage(message, "info")
self.request.response.redirect(self.context.absolute_url())
return
# 1. Copies the AR linking the original one and viceversa
ar = self.context
newar = self.cloneAR(ar)
# 2. The old AR gets a status of 'invalid'
workflow.doActionFor(ar, "retract_ar")
# 3. The new AR copy opens in status 'to be verified'
changeWorkflowState(newar, "bika_ar_workflow", "to_be_verified")
# 4. The system immediately alerts the client contacts who ordered
# the results, per email and SMS, that a possible mistake has been
# picked up and is under investigation.
# A much possible information is provided in the email, linking
# to the AR online.
laboratory = self.context.bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
mime_msg = MIMEMultipart("related")
mime_msg["Subject"] = t(
_("Erroneus result publication from ${request_id}", mapping={"request_id": ar.getRequestID()})
)
mime_msg["From"] = formataddr((encode_header(laboratory.getName()), laboratory.getEmailAddress()))
to = []
contact = ar.getContact()
if contact:
to.append(formataddr((encode_header(contact.Title()), contact.getEmailAddress())))
for cc in ar.getCCContact():
formatted = formataddr((encode_header(cc.Title()), cc.getEmailAddress()))
if formatted not in to:
to.append(formatted)
managers = self.context.portal_groups.getGroupMembers("LabManagers")
for bcc in managers:
user = self.portal.acl_users.getUser(bcc)
if user:
uemail = user.getProperty("email")
ufull = user.getProperty("fullname")
formatted = formataddr((encode_header(ufull), uemail))
if formatted not in to:
to.append(formatted)
mime_msg["To"] = ",".join(to)
aranchor = "<a href='%s'>%s</a>" % (ar.absolute_url(), ar.getRequestID())
naranchor = "<a href='%s'>%s</a>" % (newar.absolute_url(), newar.getRequestID())
addremarks = (
("addremarks" in self.request and ar.getRemarks())
and (
"<br/><br/>"
+ _("Additional remarks:")
+ "<br/>"
+ ar.getRemarks().split("===")[1].strip()
+ "<br/><br/>"
)
or ""
)
sub_d = dict(request_link=aranchor, new_request_link=naranchor, remarks=addremarks, lab_address=lab_address)
body = Template(
"Some errors have been detected in the results report "
"published from the Analysis Request $request_link. The Analysis "
"Request $new_request_link has been created automatically and the "
"previous has been invalidated.<br/>The possible mistake "
"has been picked up and is under investigation.<br/><br/>"
"$remarks $lab_address"
).safe_substitute(sub_d)
msg_txt = MIMEText(safe_unicode(body).encode("utf-8"), _subtype="html")
mime_msg.preamble = "This is a multi-part MIME message."
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, "MailHost")
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
message = _(
"Unable to send an email to alert lab "
"client contacts that the Analysis Request has been "
"retracted: ${error}",
mapping={"error": safe_unicode(msg)},
)
self.context.plone_utils.addPortalMessage(message, "warning")
message = _("${items} invalidated.", mapping={"items": ar.getRequestID()})
self.context.plone_utils.addPortalMessage(message, "warning")
self.request.response.redirect(newar.absolute_url())
def get_formatted_email(self, email_name):
"""Formats a email
"""
return formataddr((encode_header(email_name[0]), email_name[1]))
def publishFromHTML(self, aruid, results_html):
# The AR can be published only and only if allowed
uc = getToolByName(self.context, 'uid_catalog')
#ars = uc(UID=aruid)
ars = [p.getObject() for p in uc(UID=aruid)]
if not ars or len(ars) != 1:
return []
ar = ars[0]
wf = getToolByName(ar, 'portal_workflow')
allowed_states = ['verified', 'published']
# Publish/Republish allowed?
if wf.getInfoFor(ar, 'review_state') not in allowed_states:
# Pre-publish allowed?
if not ar.getAnalyses(review_state=allowed_states):
return []
# HTML written to debug file
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".html")
logger.debug("Writing HTML for %s to %s" % (ar.Title(), tmp_fn))
open(tmp_fn, "wb").write(results_html)
# Create the pdf report (will always be attached to the AR)
# we must supply the file ourself so that createPdf leaves it alone.
pdf_fn = tempfile.mktemp(suffix=".pdf")
pdf_report = createPdf(htmlreport=results_html, outfile=pdf_fn)
# PDF written to debug file
if debug_mode:
logger.debug("Writing PDF for %s to %s" % (ar.Title(), pdf_fn))
else:
os.remove(pdf_fn)
recipients = []
contact = ar.getContact()
lab = ar.bika_setup.laboratory
# BIKA Cannabis hack. Create the CSV they desire here now
#csvdata = self.create_cannabis_csv(ars)
csvdata = self.create_metrc_csv(ars)
pdf_fn = to_utf8(ar.getRequestID())
if pdf_report:
if contact:
recipients = [{
'UID':
contact.UID(),
'Username':
to_utf8(contact.getUsername()),
'Fullname':
to_utf8(contact.getFullname()),
'EmailAddress':
to_utf8(contact.getEmailAddress()),
'PublicationModes':
contact.getPublicationPreference()
}]
reportid = ar.generateUniqueId('ARReport')
report = _createObjectByType("ARReport", ar, reportid)
report.edit(AnalysisRequest=ar.UID(),
Pdf=pdf_report,
CSV=csvdata,
Html=results_html,
Recipients=recipients)
report.unmarkCreationFlag()
renameAfterCreation(report)
# Set blob properties for fields containing file data
fld = report.getField('Pdf')
fld.get(report).setFilename(pdf_fn + ".pdf")
fld.get(report).setContentType('application/pdf')
fld = report.getField('CSV')
fld.get(report).setFilename(pdf_fn + ".csv")
fld.get(report).setContentType('text/csv')
# Set status to prepublished/published/republished
status = wf.getInfoFor(ar, 'review_state')
transitions = {'verified': 'publish', 'published': 'republish'}
transition = transitions.get(status, 'prepublish')
try:
wf.doActionFor(ar, transition)
except WorkflowException:
pass
# compose and send email.
# The managers of the departments for which the current AR has
# at least one AS must receive always the pdf report by email.
# https://github.com/bikalabs/Bika-LIMS/issues/1028
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
to = []
#mngrs = ar.getResponsible()
#for mngrid in mngrs['ids']:
# name = mngrs['dict'][mngrid].get('name', '')
# email = mngrs['dict'][mngrid].get('email', '')
# if (email != ''):
# to.append(formataddr((encode_header(name), email)))
#if len(to) > 0:
# # Send the email to the managers
# mime_msg['To'] = ','.join(to)
# attachPdf(mime_msg, pdf_report, pdf_fn)
# # BIKA Cannabis hack. Create the CSV they desire here now
# fn = pdf_fn
# attachCSV(mime_msg,csvdata,fn)
# try:
# host = getToolByName(ar, 'MailHost')
# host.send(mime_msg.as_string(), immediate=True)
# except SMTPServerDisconnected as msg:
# logger.warn("SMTPServerDisconnected: %s." % msg)
# except SMTPRecipientsRefused as msg:
# raise WorkflowException(str(msg))
# Send report to recipients
recips = self.get_recipients(ar)
for recip in recips:
if 'email' not in recip.get('pubpref', []) \
or not recip.get('email', ''):
continue
title = encode_header(recip.get('title', ''))
email = recip.get('email')
formatted = formataddr((title, email))
# Create the new mime_msg object, cause the previous one
# has the pdf already attached
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(ar)[0]
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
mime_msg['To'] = formatted
# Attach the pdf to the email if requested
if pdf_report and 'pdf' in recip.get('pubpref'):
attachPdf(mime_msg, pdf_report, pdf_fn)
# BIKA Cannabis hack. Create the CSV they desire here now
fn = pdf_fn
attachCSV(mime_msg, csvdata, fn)
# For now, I will simply ignore mail send under test.
if hasattr(self.portal, 'robotframework'):
continue
msg_string = mime_msg.as_string()
# content of outgoing email written to debug file
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".email")
logger.debug("Writing MIME message for %s to %s" %
(ar.Title(), tmp_fn))
open(tmp_fn, "wb").write(msg_string)
try:
host = getToolByName(ar, 'MailHost')
host.send(msg_string, immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
# Save file on the filesystem
folder = os.environ.get('COAs_FOLDER', '')
if len(folder) != 0:
client_path = '{}/{}/'.format(folder, ar.getClientID())
if not os.path.exists(client_path):
os.makedirs(client_path)
today = self.ulocalized_time(DateTime(), long_format=0)
today_path = '{}{}/'.format(client_path, today)
if not os.path.exists(today_path):
os.makedirs(today_path)
fname = '{}{}.pdf'.format(today_path, pdf_fn)
f = open(fname, 'w')
f.write(pdf_report)
f.close()
csvname = '{}{}.csv'.format(today_path, pdf_fn)
fcsv = open(csvname, 'w')
fcsv.write(csvdata)
fcsv.close()
return [ar]
def workflow_action_retract_ar(self):
workflow = getToolByName(self.context, 'portal_workflow')
# AR should be retracted
# Can't transition inactive ARs
if not isActive(self.context):
message = _('Item is inactive.')
self.context.plone_utils.addPortalMessage(message, 'info')
self.request.response.redirect(self.context.absolute_url())
return
# 1. Copies the AR linking the original one and viceversa
ar = self.context
newar = self.cloneAR(ar)
# 2. The old AR gets a status of 'invalid'
workflow.doActionFor(ar, 'retract_ar')
# 3. The new AR copy opens in status 'to be verified'
changeWorkflowState(newar, 'bika_ar_workflow', 'to_be_verified')
# 4. The system immediately alerts the client contacts who ordered
# the results, per email and SMS, that a possible mistake has been
# picked up and is under investigation.
# A much possible information is provided in the email, linking
# to the AR online.
laboratory = self.context.bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = t(_("Erroneus result publication from ${request_id}",
mapping={"request_id": ar.getRequestID()}))
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
contact = ar.getContact()
if contact:
to.append(formataddr((encode_header(contact.Title()),
contact.getEmailAddress())))
for cc in ar.getCCContact():
formatted = formataddr((encode_header(cc.Title()),
cc.getEmailAddress()))
if formatted not in to:
to.append(formatted)
managers = self.context.portal_groups.getGroupMembers('LabManagers')
for bcc in managers:
user = self.portal.acl_users.getUser(bcc)
if user:
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
formatted = formataddr((encode_header(ufull), uemail))
if formatted not in to:
to.append(formatted)
mime_msg['To'] = ','.join(to)
aranchor = "<a href='%s'>%s</a>" % (ar.absolute_url(),
ar.getRequestID())
naranchor = "<a href='%s'>%s</a>" % (newar.absolute_url(),
newar.getRequestID())
addremarks = ('addremarks' in self.request
and ar.getRemarks()) \
and ("<br/><br/>"
+ _("Additional remarks:")
+ "<br/>"
+ ar.getRemarks().split("===")[1].strip()
+ "<br/><br/>") \
or ''
body = _("Some errors have been detected in the results report "
"published from the Analysis Request ${request_link}. The Analysis "
"Request ${new_request_link} has been created automatically and the "
"previous has been invalidated.<br/>The possible mistake "
"has been picked up and is under investigation.<br/><br/>"
"${remarks}${lab_address}",
mapping={"request_link":aranchor,
"new_request_link":naranchor,
"remarks": addremarks,
"lab_address": lab_address})
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'),
_subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
message = _('Unable to send an email to alert lab '
'client contacts that the Analysis Request has been '
'retracted: ${error}',
mapping={'error': safe_unicode(msg)})
self.context.plone_utils.addPortalMessage(message, 'warning')
message = _('${items} invalidated.',
mapping={'items': ar.getRequestID()})
self.context.plone_utils.addPortalMessage(message, 'warning')
self.request.response.redirect(newar.absolute_url())
def publishFromHTML(self, prouid, results_html):
uc = getToolByName(self.context, 'uid_catalog')
pros = uc(UID=prouid)
if not pros or len(pros) != 1:
return []
pro = pros[0].getObject();
# HTML written to debug file
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".html")
logger.debug("Writing HTML for %s to %s" % (pro.Title(), tmp_fn))
open(tmp_fn, "wb").write(results_html)
# Create the pdf report (will always be attached to the Order)
# we must supply the file ourself so that createPdf leaves it alone.
# This version replaces 'attachment' links; probably not required,
# so it's repeated below, without these localise_images.
# cleanup, results_html_for_pdf = self.localise_images(results_html)
# pdf_fn = tempfile.mktemp(suffix=".pdf")
# pdf_report = createPdf(htmlreport=results_html_for_pdf, outfile=pdf_fn)
# for fn in cleanup:
# os.remove(fn)
pdf_fn = tempfile.mktemp(suffix=".pdf")
pdf_report = createPdf(htmlreport=results_html, outfile=pdf_fn)
# PDF written to debug file
if debug_mode:
logger.debug("Writing PDF for %s to %s" % (pro.Title(), pdf_fn))
else:
os.remove(pdf_fn)
recipients = []
# Send report to supplier
supplier_data = self._supplier_data(pro)
title = encode_header(supplier_data.get('title', ''))
email = supplier_data.get('email')
formatted = formataddr((title, email))
# Create the new mime_msg object
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject(pro)
"""
Edit this to change the From address
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
"""
mime_msg['From'] = formataddr(("BIKA IMM", "*****@*****.**"))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
mime_msg['To'] = formatted
# Attach the pdf to the email if requested
if pdf_report:
attachPdf(mime_msg, pdf_report, pdf_fn)
msg_string = mime_msg.as_string()
# content of outgoing email written to debug file
if debug_mode:
tmp_fn = tempfile.mktemp(suffix=".email")
logger.debug("Writing MIME message for %s to %s" % (pro.Title(), tmp_fn))
open(tmp_fn, "wb").write(msg_string)
try:
host = getToolByName(pro, 'MailHost')
host.send(msg_string, immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
pro.setDateDispatched(DateTime())
return [pro]
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, 'portal_workflow')
laboratory = self.context.bika_setup.laboratory
BatchEmail = self.context.bika_setup.getBatchEmail()
BatchFax = self.context.bika_setup.getBatchFax()
# group analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = 'email' in self.pub_pref and BatchEmail or \
'fax' in self.pub_pref and BatchFax or 1
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b:b+batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True,
review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryTitle()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
self.services[poc][cat].append(service)
if (service.getAccredited()):
self.any_accredited = True
# compose and send email
if 'email' in self.pub_pref:
# render template to utf-8
ar_results = self.ar_results().encode("utf-8")
# XXX
ar_debug_name = '%s_%s.html' % \
(self.analysis_requests[0].Title(), self.action)
open(join(Globals.INSTANCE_HOME,'var', ar_debug_name),
"w").write(ar_results)
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = self.get_mail_subject()
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
mime_msg['To'] = formataddr(
(encode_header(self.contact.getFullname()),
self.contact.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(ar_results, _subtype='html')
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == 'publish':
for ar in self.batch:
try:
workflow.doActionFor(ar, 'publish')
except WorkflowException:
pass
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def publishFromHTML(self, ar_uids, results_html):
"""ar_uids can be a single UID or a list of AR uids. The resulting
ARs will be published together (ie, sent as a single outbound email)
and the entire report will be saved in each AR's published-results
tab.
"""
debug_mode = App.config.getConfiguration().debug_mode
wf = getToolByName(self.context, 'portal_workflow')
# The AR can be published only and only if allowed
uc = getToolByName(self.context, 'uid_catalog')
ars = [p.getObject() for p in uc(UID=ar_uids)]
if not ars:
return []
results_html = self.localize_images(results_html)
# Create the pdf report for the supplied HTML.
open('/tmp/2499.html', 'w').write(results_html)
pdf_report = createPdf(results_html, False)
# PDF written to debug file?
if debug_mode:
pdf_fn = tempfile.mktemp(suffix=".pdf")
logger.info("Writing PDF for {} to {}".format(
', '.join([ar.Title() for ar in ars]), pdf_fn))
open(pdf_fn, 'wb').write(pdf_report)
for ar in ars:
# Generate in each relevant AR, a new ARReport
reportid = ar.generateUniqueId('ARReport')
report = _createObjectByType("ARReport", ar, reportid)
report.edit(
AnalysisRequest=ar.UID(),
Pdf=pdf_report,
Html=results_html,
)
report.unmarkCreationFlag()
renameAfterCreation(report)
# Modify the workflow state of each AR that's been published
status = wf.getInfoFor(ar, 'review_state')
transitions = {'verified': 'publish', 'published': 'republish'}
transition = transitions.get(status, 'prepublish')
try:
wf.doActionFor(ar, transition)
except WorkflowException:
pass
# compose and send email.
# The managers of the departments for which the current AR has
# at least one AS must receive always the pdf report by email.
# https://github.com/bikalabs/Bika-LIMS/issues/1028
lab = ars[0].bika_setup.laboratory
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = "Published results for %s" % \
",".join([ar.Title() for ar in ars])
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
to = []
to_emails = []
mngrs = []
for ar in ars:
resp = ar.getResponsible()
if 'dict' in resp and resp['dict']:
for mngrid, mngr in resp['dict'].items():
if mngr['email'] not in [m['email'] for m in mngrs]:
mngrs.append(mngr)
for mngr in mngrs:
name = mngr['name']
email = mngr['email']
to.append(formataddr((encode_header(name), email)))
# Send report to recipients
for ar in ars:
recips = self.get_recipients(ar)
for recip in recips:
if 'email' not in recip.get('pubpref', []) \
or not recip.get('email', ''):
continue
title = encode_header(recip.get('title', ''))
email = recip.get('email')
if email not in to_emails:
to.append(formataddr((title, email)))
to_emails.append(email)
# Create the new mime_msg object, cause the previous one
# has the pdf already attached
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = "Published results for %s" % \
",".join([ar.Title() for ar in ars])
mime_msg['From'] = formataddr(
(encode_header(lab.getName()), lab.getEmailAddress()))
mime_msg.preamble = 'This is a multi-part MIME message.'
msg_txt = MIMEText(results_html, _subtype='html')
mime_msg.attach(msg_txt)
mime_msg['To'] = ",".join(to)
# Attach the pdf to the email
fn = "_".join([ar.Title() for ar in ars])
attachPdf(mime_msg, pdf_report, fn)
# ALS hack. Create the CSV they desire here now
csvdata = self.create_als_csv(ars)
# Attach to email
part = MIMEBase('text', "csv")
fn = self.current_certificate_number()
part.add_header('Content-Disposition',
'attachment; filename="{}.csv"'.format(fn))
part.set_payload(csvdata)
mime_msg.attach(part)
msg_string = mime_msg.as_string()
try:
host = getToolByName(ars[0], 'MailHost')
host.send(msg_string, immediate=True)
except SMTPServerDisconnected as msg:
logger.warn("SMTPServerDisconnected: %s." % msg)
except SMTPRecipientsRefused as msg:
raise WorkflowException(str(msg))
return ars
def __call__(self):
rc = getToolByName(self.context, REFERENCE_CATALOG)
workflow = getToolByName(self.context, "portal_workflow")
BatchEmail = self.context.bika_setup.getBatchEmail()
username = self.context.portal_membership.getAuthenticatedMember().getUserName()
self.reporter = self.user_fullname(username)
self.reporter_email = self.user_email(username)
# signature image
self.reporter_signature = ""
c = [x for x in self.bika_setup_catalog(portal_type="LabContact") if x.getObject().getUsername() == username]
if c:
sf = c[0].getObject().getSignature()
if sf:
self.reporter_signature = sf.absolute_url() + "/Signature"
# lab address
self.laboratory = laboratory = self.context.bika_setup.laboratory
self.lab_address = "<br/>".join(laboratory.getPrintAddress())
# group/publish analysis requests by contact
ARs_by_contact = {}
for ar in self.analysis_requests:
contact_uid = ar.getContact().UID()
if contact_uid not in ARs_by_contact:
ARs_by_contact[contact_uid] = []
ARs_by_contact[contact_uid].append(ar)
for contact_uid, ars in ARs_by_contact.items():
ars.sort()
self.contact = ars[0].getContact()
self.pub_pref = self.contact.getPublicationPreference()
batch_size = "email" in self.pub_pref and BatchEmail or 5
# client address
self.client = ars[0].aq_parent
self.client_address = "<br/>".join(self.client.getPrintAddress())
self.Footer = self.context.bika_setup.getResultFooter()
# send batches of ARs to each contact
for b in range(0, len(ars), batch_size):
self.batch = ars[b : b + batch_size]
self.any_accredited = False
self.any_drymatter = False
# get all services from all requests in this batch into a
# dictionary:
# {'Point Of Capture': {'Category': [service,service,...]}}
self.services = {}
out_fn = "_".join([ar.Title() for ar in self.batch])
for ar in self.batch:
if ar.getReportDryMatter():
self.any_drymatter = True
states = ("verified", "published")
for analysis in ar.getAnalyses(full_objects=True, review_state=states):
service = analysis.getService()
poc = POINTS_OF_CAPTURE.getValue(service.getPointOfCapture())
cat = service.getCategoryTitle()
if poc not in self.services:
self.services[poc] = {}
if cat not in self.services[poc]:
self.services[poc][cat] = []
if service not in self.services[poc][cat]:
self.services[poc][cat].append(service)
if service.getAccredited():
self.any_accredited = True
# compose and send email
if "email" in self.pub_pref:
# render template
ar_results = self.ar_results()
ar_results = safe_unicode(ar_results).encode("utf-8")
ar_results = self.escape(ar_results)
debug_mode = App.config.getConfiguration().debug_mode
if debug_mode:
open(join(Globals.INSTANCE_HOME, "var", out_fn + ".html"), "w").write(ar_results)
pisa.showLogging()
ramdisk = StringIO()
pdf = pisa.CreatePDF(ar_results, ramdisk)
pdf_data = ramdisk.getvalue()
ramdisk.close()
if debug_mode:
open(join(Globals.INSTANCE_HOME, "var", out_fn + ".pdf"), "wb").write(pdf_data)
mime_msg = MIMEMultipart("related")
mime_msg["Subject"] = self.get_mail_subject()
mime_msg["From"] = formataddr((encode_header(laboratory.getName()), laboratory.getEmailAddress()))
mime_msg["To"] = formataddr(
(encode_header(self.contact.getFullname()), self.contact.getEmailAddress())
)
mime_msg.preamble = "This is a multi-part MIME message."
msg_txt = MIMEText(ar_results, _subtype="html")
mime_msg.attach(msg_txt)
if not pdf.err:
part = MIMEBase("application", "application/pdf")
part.add_header("Content-Disposition", 'attachment; filename="%s.pdf"' % out_fn)
part.set_payload(pdf_data)
Encoders.encode_base64(part)
mime_msg.attach(part)
try:
host = getToolByName(self.context, "MailHost")
host.send(mime_msg.as_string(), immediate=True)
except SMTPServerDisconnected, msg:
if not debug_mode:
raise SMTPServerDisconnected(msg)
except SMTPRecipientsRefused, msg:
raise WorkflowException(str(msg))
if self.action == "publish":
for ar in self.batch:
try:
workflow.doActionFor(ar, "publish")
except WorkflowException:
pass
## if not pdf.err:
## setheader = self.request.RESPONSE.setHeader
## setheader('Content-Type', 'application/pdf')
## setheader("Content-Disposition", "attachment;filename=\"%s.pdf\"" % out_fn)
## self.request.RESPONSE.write(pdf_data)
else:
raise Exception, "XXX pub_pref %s" % self.pub_pref
def __call__(self):
# Do generic bika.lims stuff
_AnalysisRequestWorkflowAction.__call__(self)
# Do bika-health specific actions when submit
action = _AnalysisRequestWorkflowAction._get_form_workflow_action(self)
addPortalMessage = self.context.plone_utils.addPortalMessage
if action[0] == 'submit' and isActive(self.context):
inpanicanalyses = []
workflow = getToolByName(self.context, 'portal_workflow')
translate = self.context.translate
rc = getToolByName(self.context, REFERENCE_CATALOG)
uc = getToolByName(self.context, 'uid_catalog')
# retrieve the results from database and check if
# the values are exceeding panic levels
alerts = {}
for uid in self.request.form.get('Result', [{}])[0].keys():
analysis = rc.lookupObject(uid)
analysis = analysis.getObject() if hasattr(analysis, 'getObject') else analysis
if not analysis:
continue
astate = workflow.getInfoFor(analysis, 'review_state')
if astate == 'retracted':
continue
alerts.update(ResultOutOfRange(analysis)())
if alerts:
message = translate(_('Some results exceeded the '
'panic levels that may '
'indicate an imminent '
'life-threatening condition'
))
addPortalMessage(message, 'warning')
self.request.response.redirect(self.context.absolute_url())
# If panic levels alert email enabled, send an email to
# labmanagers
bs = self.context.bika_setup
if hasattr(bs, 'getEnablePanicAlert') \
and bs.getEnablePanicAlert():
laboratory = self.context.bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
managers = self.context.portal_groups.getGroupMembers('LabManagers')
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = _("Panic alert")
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
for manager in managers:
user = self.portal.acl_users.getUser(manager)
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
to.append(formataddr((encode_header(ufull), uemail)))
mime_msg['To'] = ','.join(to)
strans = []
ars = {}
for analysis_uid, alertlist in alerts:
analysis = uc(analysis_uid).getObject()
for alert in alertlist:
ars[analysis.aq_parent.Title()] = 1
strans.append("- {0}, {1}: {2}".format(
analysis.Title(),
translate(_("Result")),
analysis.getResult()))
ars = ", ".join(ars.keys())
stran = "<br/>".join(strans)
text = translate(_(
"Some results from ${items} exceeded the panic levels "
"that may indicate an imminent life-threatening "
"condition: <br/><br/>{analysisresults}<br/><br/>"
"<b>Please, check the Analysis Request if you "
"want to re-test the analysis or immediately "
"alert the client.</b><br/><br/>{lab_address}",
mapping={'items': ars,
'analysisresults': stran,
'lab_address': lab_address}))
msg_txt = MIMEText(safe_unicode(text).encode('utf-8'),
_subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
ar = inpanicanalyses[0].getRequestID()
logger.error("Panic level email %s: %s" %
(ar, str(msg)))
message = translate(
_('Unable to send an email to alert lab '
'managers that some analyses exceeded the '
'panic levels') + (": %s" % str(msg)))
addPortalMessage(message, 'warning')
def __call__(self):
# Do generic bika.lims stuff
BaseClass.__call__(self)
# Do bika-health specific actions when submit
action = BaseClass._get_form_workflow_action(self)
addPortalMessage = self.context.plone_utils.addPortalMessage
if action[0] == 'submit' and isActive(self.context):
inpanicanalyses = []
workflow = getToolByName(self.context, 'portal_workflow')
translate = self.context.translate
rc = getToolByName(self.context, REFERENCE_CATALOG)
uc = getToolByName(self.context, 'uid_catalog')
# retrieve the results from database and check if
# the values are exceeding panic levels
alerts = {}
for uid in self.request.form.get('Result', [{}])[0].keys():
analysis = rc.lookupObject(uid)
analysis = analysis.getObject() if hasattr(analysis, 'getObject') else analysis
if not analysis:
continue
astate = workflow.getInfoFor(analysis, 'review_state')
if astate == 'retracted':
continue
alerts.update(ResultOutOfRange(analysis)())
if alerts:
message = translate(_('Some results exceeded the '
'panic levels that may '
'indicate an imminent '
'life-threatening condition'
))
addPortalMessage(message, 'warning')
self.request.response.redirect(self.context.absolute_url())
# If panic levels alert email enabled, send an email to
# labmanagers
bs = self.context.bika_setup
if hasattr(bs, 'getEnablePanicAlert') \
and bs.getEnablePanicAlert():
laboratory = self.context.bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
managers = self.context.portal_groups.getGroupMembers('LabManagers')
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = _("Panic alert")
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
for manager in managers:
user = self.portal.acl_users.getUser(manager)
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
to.append(formataddr((encode_header(ufull), uemail)))
mime_msg['To'] = ','.join(to)
strans = []
ars = {}
for analysis_uid, alertlist in alerts:
analysis = uc(analysis_uid).getObject()
for alert in alertlist:
ars[analysis.aq_parent.Title()] = 1
strans.append("- {0}, {1}: {2}".format(
analysis.getService().Title(),
translate(_("Result")),
analysis.getResult()))
ars = ", ".join(ars.keys())
stran = "<br/>".join(strans)
text = translate(_(
"Some results from ${items} exceeded the panic levels "
"that may indicate an imminent life-threatening "
"condition: <br/><br/>{analysisresults}<br/><br/>"
"<b>Please, check the Analysis Request if you "
"want to re-test the analysis or immediately "
"alert the client.</b><br/><br/>{lab_address}",
mapping={'items': ars,
'analysisresults': stran,
'lab_address': lab_address}))
msg_txt = MIMEText(safe_unicode(text).encode('utf-8'),
_subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
ar = inpanicanalyses[0].getRequestID()
logger.error("Panic level email %s: %s" %
(ar, str(msg)))
message = translate(
_('Unable to send an email to alert lab '
'managers that some analyses exceeded the '
'panic levels') + (": %s" % str(msg)))
addPortalMessage(message, 'warning')
def notify_ar_retract(self, ar, newar):
bika_setup = api.get_bika_setup()
laboratory = bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = t(_("Erroneus result publication from ${request_id}",
mapping={"request_id": ar.getRequestID()}))
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
contact = ar.getContact()
if contact:
to.append(formataddr((encode_header(contact.Title()),
contact.getEmailAddress())))
for cc in ar.getCCContact():
formatted = formataddr((encode_header(cc.Title()),
cc.getEmailAddress()))
if formatted not in to:
to.append(formatted)
managers = self.context.portal_groups.getGroupMembers('LabManagers')
for bcc in managers:
user = self.portal.acl_users.getUser(bcc)
if user:
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
formatted = formataddr((encode_header(ufull), uemail))
if formatted not in to:
to.append(formatted)
mime_msg['To'] = ','.join(to)
aranchor = "<a href='%s'>%s</a>" % (ar.absolute_url(),
ar.getRequestID())
naranchor = "<a href='%s'>%s</a>" % (newar.absolute_url(),
newar.getRequestID())
addremarks = ('addremarks' in self.request and ar.getRemarks()) and ("<br/><br/>" + _("Additional remarks:") +
"<br/>" + ar.getRemarks().split("===")[1].strip() +
"<br/><br/>") or ''
sub_d = dict(request_link=aranchor,
new_request_link=naranchor,
remarks=addremarks,
lab_address=lab_address)
body = Template("Some errors have been detected in the results report "
"published from the Analysis Request $request_link. The Analysis "
"Request $new_request_link has been created automatically and the "
"previous has been invalidated.<br/>The possible mistake "
"has been picked up and is under investigation.<br/><br/>"
"$remarks $lab_address").safe_substitute(sub_d)
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'),
_subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
message = _('Unable to send an email to alert lab '
'client contacts that the Analysis Request has been '
'retracted: ${error}',
mapping={'error': safe_unicode(msg)})
self.context.plone_utils.addPortalMessage(message, 'warning')