def folder_item(self, obj, item, index):
batch = api.get_object(obj)
# Doctor
doctor = get_field_value(batch, "Doctor", None)
item["Doctor"] = doctor and doctor.Title() or ""
item["replace"]["Doctor"] = doctor and get_link(
api.get_url(doctor), doctor.Title())
# Onset Date
onset = get_field_value(batch, "OnsetDate", None)
item["OnsetDate"] = onset and self.listing.ulocalized_time(onset) or ""
# Patient
item["Patient"] = ""
item["getPatientID"] = ""
item["getClientPatientID"] = ""
patient = get_field_value(batch, "Patient", None)
if patient:
url = api.get_url(patient)
item["Patient"] = patient.Title()
item["replace"]["Patient"] = get_link(url, patient.Title())
item["getPatientID"] = patient.id
item["replace"]["getPatientID"] = get_link(url, patient.id)
pid = patient.getClientPatientID()
pid_link = pid and get_link(url, pid) or ""
item["getClientPatientID"] = pid or ""
item["replace"]["getClientPatientID"] = pid_link
return item
def folder_item(self, obj, item, index):
batch = api.get_object(obj)
# Doctor
doctor = get_field_value(batch, "Doctor", None)
item["Doctor"] = doctor and doctor.Title() or ""
item["replace"]["Doctor"] = doctor and get_link(api.get_url(doctor),
doctor.Title())
# Onset Date
onset = get_field_value(batch, "OnsetDate", None)
item["OnsetDate"] = onset and self.listing.ulocalized_time(onset) or ""
# Patient
item["Patient"] = ""
item["getPatientID"] = ""
item["getClientPatientID"] = ""
patient = get_field_value(batch, "Patient", None)
if patient:
url = api.get_url(patient)
item["Patient"] = patient.Title()
item["replace"]["Patient"] = get_link(url, patient.Title())
item["getPatientID"] = patient.id
item["replace"]["getPatientID"] = get_link(url, patient.id)
pid = patient.getClientPatientID()
pid_link = pid and get_link(url, pid) or ""
item["getClientPatientID"] = pid or ""
item["replace"]["getClientPatientID"] = pid_link
return item
def folderitem(self, obj, item, index):
item = super(QCAnalysesView, self).folderitem(obj, item, index)
obj = self.get_object(obj)
# Fill Worksheet cell
worksheet = obj.getWorksheet()
if not worksheet:
return item
# Fill the Worksheet cell
ws_id = api.get_id(worksheet)
ws_url = api.get_url(worksheet)
item["replace"]["Worksheet"] = get_link(ws_url, value=ws_id)
if IDuplicateAnalysis.providedBy(obj):
an_type = "d"
img_name = "duplicate.png"
parent = obj.getRequest()
else:
an_type = obj.getReferenceType()
img_name = an_type == "c" and "control.png" or "blank.png"
parent = obj.aq_parent
# Render the image
an_type = QCANALYSIS_TYPES.getValue(an_type)
item['before']['Service'] = get_image(img_name, title=an_type)
# Fill the Parent cell
parent_url = api.get_url(parent)
parent_id = api.get_id(parent)
item["replace"]["Parent"] = get_link(parent_url, value=parent_id)
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item to be rendered
"""
obj = api.get_object(obj)
# Replace client name with the link
item['getPrimaryReferrer'] = ""
client = obj.getClient()
if client:
client_link = get_link(api.get_url(client), api.get_title(client))
item["replace"]["getPrimaryReferrer"] = client_link
# Replace doctor's full name with a link
fullname = obj.getFullname()
doctor_url = "{}/analysisrequests".format(api.get_url(obj))
doctor_link = get_link(doctor_url, fullname)
item["replace"]["getFullname"] = doctor_link
doctor_link = get_link(doctor_url, obj.getDoctorID())
item["replace"]["getDoctorID"] = doctor_link
# Replace doctor's full name with a link
email = obj.getEmailAddress()
if email:
item["replace"]['getEmailAddress'] = get_email_link(email)
# Display the internal/external icons, but only if the logged-in user
# does not belong to an external client
if not self.is_external_user():
item["before"]["getFullname"] = get_client_aware_html_image(obj)
return item
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
title = obj.Title()
url = obj.absolute_url()
item["replace"]["Title"] = get_link(url, value=title)
sampletype = obj.getSampleType()
if sampletype:
title = sampletype.Title()
url = sampletype.absolute_url()
item["replace"]["SampleType"] = get_link(url, value=title)
dynamic_spec = obj.getDynamicAnalysisSpec()
if dynamic_spec:
title = dynamic_spec.Title()
url = api.get_url(dynamic_spec)
item["replace"]["DynamicSpec"] = get_link(url, value=title)
return item
def folderitem(self, obj, item, index):
item = super(AnalysisRequestsView, self)\
.folderitem(obj, item, index)
url = '{}/analysisrequests'.format(obj.getPatientURL)
item['getPatientID'] = obj.getPatientID
item['getPatientTitle'] = obj.getPatientTitle
item['getClientPatientID'] = obj.getClientPatientID
# Replace with Patient's URLs
if obj.getClientPatientID:
item['replace']['getClientPatientID'] = get_link(
url, obj.getClientPatientID)
if obj.getPatientTitle:
item['replace']['getPatientTitle'] = get_link(
url, obj.getPatientTitle)
if obj.getPatientID:
item['replace']['getPatientID'] = get_link(url, obj.getPatientID)
# Doctor
item['getDoctorTitle'] = obj.getDoctorTitle
if obj.getDoctorURL:
url = '{}/analysisrequests'.format(obj.getDoctorURL)
item['replace']['getDoctorTitle'] = get_link(
url, obj.getDoctorTitle)
return item
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
obj = api.get_object(obj)
title = obj.Title()
description = obj.Description()
url = obj.absolute_url()
item["replace"]["Title"] = get_link(url, value=title)
item["Description"] = description
item["Manager"] = ""
item["ManagerPhone"] = ""
item["ManagerEmail"] = ""
manager = obj.getManager()
if manager:
manager_name = manager.getFullname()
item["Manager"] = manager_name
manager_url = manager.absolute_url()
item["replace"]["Manager"] = get_link(manager_url, manager_name)
manager_email = manager.getEmailAddress()
item["replace"]["ManagerEmail"] = get_email_link(
manager_email, value=manager_email)
item["ManagerPhone"] = manager.getBusinessPhone()
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item (Client) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the client, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
# render a link to the defined start page
link_url = "{}/{}".format(item["url"], self.landing_page)
item["replace"]["title"] = get_link(link_url, item["title"])
item["replace"]["getClientID"] = get_link(link_url,
item["getClientID"])
# render an email link
item["replace"]["EmailAddress"] = get_email_link(item["EmailAddress"])
# translate True/FALSE values
item["replace"]["BulkDiscount"] = obj.getBulkDiscount() and _(
"Yes") or _("No")
item["replace"][
"MemberDiscountApplies"] = obj.getMemberDiscountApplies() and _(
"Yes") or _("No")
# render a phone link
phone = obj.getPhone()
if phone:
item["replace"]["Phone"] = get_link("tel:{}".format(phone), phone)
return item
def folderitem(self, obj, item, idx):
"""
Replace or add the required/wanted fields for each invoice
in the item dictionary
:param obj: the instance of the class to be foldered. In our case, an
Invoice
:param item: dict containing the properties of the object to be used by
the template
:return: dictionary with the updated fields of the invoice being processed
"""
currency = currency_format(self.context, 'en')
item['replace']['id'] = get_link(api.get_url(obj), obj.getId())
client = obj.getClient()
if client:
item['client'] = client.Title()
item['replace']['client'] = get_link(client.absolute_url(),
item['client'])
item['email'] = client.getEmailAddress()
item['replace']['email'] = get_email_link(client.getEmailAddress())
item['phone'] = client.getPhone()
else:
item['client'] = ''
item['email'] = ''
item['phone'] = ''
item['invoicedate'] = self.ulocalized_time(obj.getInvoiceDate())
item['startdate'] = self.ulocalized_time(obj.getBatchStartDate())
item['enddate'] = self.ulocalized_time(obj.getBatchEndDate())
item['subtotal'] = currency(obj.getSubtotal())
item['vatamount'] = currency(obj.getVATAmount())
item['total'] = currency(obj.getTotal())
return item
def folderitem(self, obj, item, index):
item = super(AnalysisRequestsView, self)\
.folderitem(obj, item, index)
url = '{}/analysisrequests'.format(obj.getPatientURL)
item['getPatientID'] = obj.getPatientID
item['getPatientTitle'] = obj.getPatientTitle
item['getClientPatientID'] = obj.getClientPatientID
# Replace with Patient's URLs
if obj.getClientPatientID:
item['replace']['getClientPatientID'] = get_link(
url, obj.getClientPatientID)
if obj.getPatientTitle:
item['replace']['getPatientTitle'] = get_link(
url, obj.getPatientTitle)
if obj.getPatientID:
item['replace']['getPatientID'] = get_link(url, obj.getPatientID)
# Doctor
item['getDoctorTitle'] = obj.getDoctorTitle
if obj.getDoctorURL:
url = '{}/analysisrequests'.format(obj.getDoctorURL)
item['replace']['getDoctorTitle'] = get_link(url, obj.getDoctorTitle)
return item
def folderitem(self, obj, item, index):
obj = api.get_object(obj)
url = api.get_url(obj)
# MRN
mrn = obj.get_mrn().encode("utf8")
item["mrn"] = mrn
item["replace"]["mrn"] = get_link(url, value=mrn)
# Patient ID
patient_id = obj.get_patient_id().encode("utf8")
item["patient_id"] = patient_id
if patient_id:
item["replace"]["patient_id"] = get_link(url, value=patient_id)
# Fullname
fullname = obj.get_fullname().encode("utf8")
item["fullname"] = fullname
if fullname:
item["replace"]["fullname"] = get_link(url, value=fullname)
# Email
email = obj.get_email()
item["email"] = email
if email:
item["replace"]["email"] = get_email_link(email, value=email)
# Gender
item["gender"] = obj.get_gender()
# Birthdate
birthdate = obj.get_birthdate()
item["birthdate"] = self.ulocalized_time(birthdate, long_format=0)
return item
def folderitem(self, obj, item, index):
item = super(InstrumentReferenceAnalysesView,
self).folderitem(obj, item, index)
analysis = api.get_object(obj)
# Partition is used to group/toggle QC Analyses
sample = analysis.getSample()
item["replace"]["Partition"] = get_link(api.get_url(sample),
api.get_id(sample))
# Get retractions field
item["Retractions"] = ""
report = analysis.getRetractedAnalysesPdfReport()
if report:
url = api.get_url(analysis)
href = "{}/at_download/RetractedAnalysesPdfReport".format(url)
attrs = {"class": "pdf", "target": "_blank"}
title = _("Retractions")
link = get_link(href, title, **attrs)
item["Retractions"] = title
item["replace"]["Retractions"] = link
# Add the analysis to the QC Chart
self.chart.add_analysis(analysis)
return item
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
item["Description"] = obj.Description()
item["replace"]["Title"] = get_link(item["url"], item["Title"])
instrument = obj.getInstrument()
if instrument:
instrument_url = api.get_url(instrument)
instrument_title = api.get_title(instrument)
item["Instrument"] = instrument_title
item["replace"]["Instrument"] = get_link(
instrument_url, value=instrument_title)
# Method
method_uid = obj.getMethodUID()
if method_uid:
method = api.get_object_by_uid(method_uid)
method_url = api.get_url(method)
method_title = api.get_title(method)
item["Method"] = method_title
item["replace"]["Method"] = get_link(
method_url, value=method_title)
return item
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
# ensure we have an object and not a brain
obj = api.get_object(obj)
uid = api.get_uid(obj)
url = api.get_url(obj)
title = api.get_title(obj)
# get the category
if self.show_categories_enabled():
category = obj.getCategoryTitle()
if category not in self.categories:
self.categories.append(category)
item["category"] = category
config = self.configuration.get(uid, {})
hidden = config.get("hidden", False)
item["replace"]["Title"] = get_link(url, value=title)
item["Price"] = self.format_price(obj.Price)
item["allow_edit"] = self.get_editable_columns()
item["selected"] = False
item["Hidden"] = hidden
item["selected"] = uid in self.configuration
# Add methods
methods = obj.getMethods()
if methods:
links = map(
lambda m: get_link(
m.absolute_url(), value=m.Title(), css_class="link"),
methods)
item["replace"]["Methods"] = ", ".join(links)
else:
item["methods"] = ""
# Icons
after_icons = ""
if obj.getAccredited():
after_icons += get_image(
"accredited.png", title=_("Accredited"))
if obj.getAttachmentOption() == "r":
after_icons += get_image(
"attach_reqd.png", title=_("Attachment required"))
if obj.getAttachmentOption() == "n":
after_icons += get_image(
"attach_no.png", title=_("Attachment not permitted"))
if after_icons:
item["after"]["Title"] = after_icons
return item
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
title = obj.Title()
description = obj.Description()
url = obj.absolute_url()
item["Description"] = description
item["replace"]["Title"] = get_link(url, value=title)
retention_period = obj.getRetentionPeriod()
if retention_period:
hours = retention_period.get("hours", "0")
minutes = retention_period.get("minutes", "0")
days = retention_period.get("days", "0")
item["RetentionPeriod"] = _(
"hours: {} minutes: {} days: {}".format(hours, minutes, days))
else:
item["RetentionPeriod"] = ""
sample_matrix = obj.getSampleMatrix()
if sample_matrix:
title = sample_matrix.Title()
url = sample_matrix.absolute_url()
item["SampleMatrix"] = title
item["replace"]["SampleMatrix"] = get_link(url, value=title)
else:
item["SampleMatrix"] = ""
container_type = obj.getContainerType()
if container_type:
title = container_type.Title()
url = container_type.absolute_url()
item["ContainerType"] = title
item["replace"]["ContainerType"] = get_link(url, value=title)
else:
item["ContainerType"] = ""
sample_points = obj.getSamplePoints()
if sample_points:
links = map(
lambda sp: get_link(
sp.absolute_url(), value=sp.Title(), css_class="link"),
sample_points)
item["replace"]["getSamplePoints"] = ", ".join(links)
else:
item["getSamplePoints"] = ""
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item to be rendered
"""
item = super(DoctorsView, self).folderitem(obj, item, index)
url = item.get("url")
doctor_id = item.get("getDoctorID")
item['replace']['getDoctorID'] = get_link(url, value=doctor_id)
item['getPrimaryReferrer'] = ""
doctor = api.get_object(obj)
pri = doctor.getPrimaryReferrer()
if pri:
pri_url = pri.absolute_url()
pri = pri.Title()
item['replace']['getPrimaryReferrer'] = get_link(pri_url, value=pri)
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item to be rendered
"""
item = super(DoctorsView, self).folderitem(obj, item, index)
url = item.get("url")
doctor_id = item.get("getDoctorID")
item['replace']['getDoctorID'] = get_link(url, value=doctor_id)
item['getPrimaryReferrer'] = ""
doctor = api.get_object(obj)
pri = doctor.getPrimaryReferrer()
if pri:
pri_url = pri.absolute_url()
pri = pri.Title()
item['replace']['getPrimaryReferrer'] = get_link(pri_url, value=pri)
return item
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
layout = obj.getLayout
title = api.get_title(obj)
url = api.get_url(obj)
item["CreationDate"] = self.ulocalized_time(obj.created)
if len(obj.getAnalysesUIDs) == 0:
item["table_row_class"] = "state-empty-worksheet"
title_link = "{}/{}".format(url, "add_analyses")
if len(layout) > 0:
title_link = "{}/{}".format(url, "manage_results")
item["Title"] = title
item["replace"]["Title"] = get_link(title_link, value=title)
pos_parent = {}
for slot in layout:
# compensate for bad data caused by a stupid bug.
if type(slot["position"]) in (list, tuple):
slot["position"] = slot["position"][0]
if slot["position"] == "new":
continue
if slot["position"] in pos_parent:
continue
pos_parent[slot["position"]] =\
self.rc.lookupObject(slot.get("container_uid"))
# Total QC Analyses
item["NumQCAnalyses"] = str(obj.getNumberOfQCAnalyses)
# Total Routine Analyses
item["NumRegularAnalyses"] = str(obj.getNumberOfRegularAnalyses)
# Total Number of Samples
item["NumRegularSamples"] = str(obj.getNumberOfRegularSamples)
# Progress
progress_perc = obj.getProgressPercentage
item["replace"]["Progress"] = get_progress_bar_html(progress_perc)
review_state = item["review_state"]
if self.can_reassign and review_state == "open":
item["Analyst"] = obj.getAnalyst
item["allow_edit"] = ["Analyst"]
item["required"] = ["Analyst"]
item["choices"] = {"Analyst": self.analyst_choices}
else:
fullname = user_fullname(self.context, obj.getAnalyst)
item["Analyst"] = fullname
return item
def folderitem(self, obj, item, index):
obj = api.get_object(obj)
url = api.get_url(obj)
title = api.get_title(obj)
item["replace"]["Title"] = get_link(url, value=title)
item["query_type"] = getattr(obj, "query_type", None)
return item
def folderitem(self, obj, item, index):
"""Augment folder listing item
"""
url = item.get("url")
title = item.get("Title")
calibrator = obj.getCalibrator()
item["getDownFrom"] = self.localize_date(obj.getDownFrom())
item["getDownTo"] = self.localize_date(obj.getDownTo())
item["getCalibrator"] = ""
if calibrator:
props = api.get_user_properties(calibrator)
name = props.get("fullname", calibrator)
item["getCalibrator"] = name
item["replace"]["Title"] = get_link(url, value=title)
# calibration with the most remaining days
if obj == self.latest_calibration:
item["state_class"] = "state-published"
# running calibrations
elif obj in self.active_calibrations:
item["state_class"] = "state-active"
# inactive calibrations
else:
item["state_class"] = "state-inactive"
return item
def folderitem(self, obj, item, index):
item['Description'] = obj.Description()
item['replace']['Title'] = get_link(item['url'], item['Title'])
item['Instrument'] = ''
instrument = obj.getInstrument()
item['Instrument'] = instrument and instrument.Title() or ''
return item
def folderitem(self, obj, item, index):
item['Description'] = obj.Description()
item['replace']['Title'] = get_link(item['url'], item['Title'])
item['Instrument'] = ''
instrument = obj.getInstrument()
item['Instrument'] = instrument and instrument.Title() or ''
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item (Client) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the client, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
url = obj.absolute_url()
title = obj.Title()
item['Description'] = obj.Description()
item["replace"]["Title"] = get_link(url, value=title)
# Icons
after_icons = ""
if obj.getBlank():
after_icons += get_image("blank.png", title=t(_("Blank")))
if obj.getHazardous():
after_icons += get_image("hazardous.png", title=t(_("Hazardous")))
if after_icons:
item["after"]["Title"] = after_icons
return item
def _folder_item_assigned_worksheet(self, analysis_brain, item):
"""Adds an icon to the item dict if the analysis is assigned to a
worksheet and if the icon is suitable for the current context
:param analysis_brain: Brain that represents an analysis
:param item: analysis' dictionary counterpart that represents a row
"""
if not IAnalysisRequest.providedBy(self.context):
# We want this icon to only appear if the context is an AR
return
if analysis_brain.worksheetanalysis_review_state != 'assigned':
# No need to go further. This analysis is not assigned to any WS
return
analysis_obj = self.get_object(analysis_brain)
worksheet = analysis_obj.getBackReferences('WorksheetAnalysis')
if not worksheet:
# No worksheet assigned. Do nothing
return
worksheet = worksheet[0]
title = t(
_("Assigned to: ${worksheet_id}",
mapping={'worksheet_id': safe_unicode(worksheet.id)}))
img = get_image('worksheet.png', title=title)
anchor = get_link(worksheet.absolute_url(), img)
self._append_html_element(item, 'state_title', anchor)
def folderitem(self, obj, item, index):
# Date of Birth
dob = obj.getBirthDate
item['getBirthDate'] = dob and self.ulocalized_time(dob) or ""
try:
item["age"] = dob and get_age_ymd(dob) or ""
except:
# Wrong date??
msg = _("Date of Birth might be wrong")
img = get_image("exclamation.png", title=msg)
item["replace"]["age"] = img
# make the columns patient title, patient ID and client patient ID
# redirect to the Analysis Requests of the patient
ars_url = "{}/{}".format(api.get_url(obj), "analysisrequests")
for column in ['Title', 'getPatientID', 'getClientPatientID']:
value = getattr(obj, column, None)
if value:
item["replace"][column] = get_link(ars_url, value)
# Display the internal/external icons, but only if the logged-in user
# does not belong to an external client
if not self.is_external_user():
# Renders an icon (shared/private/warn) next to the title of the
# item based on the client
item["before"]["Title"] = get_client_aware_html_image(obj)
return item
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
item = super(ReferenceSamplesView, self).folderitem(obj, item, index)
# ensure we have an object and not a brain
obj = api.get_object(obj)
url = api.get_url(obj)
title = api.get_title(obj)
item["Title"] = title
item["replace"]["Title"] = get_link(url, value=title)
item["allow_edit"] = self.get_editable_columns()
# Supported Services
supported_services_choices = self.make_supported_services_choices(obj)
item["choices"]["SupportedServices"] = supported_services_choices
# Position
item["Position"] = "new"
item["choices"]["Position"] = self.make_position_choices()
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item (Client) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the client, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
obj = api.get_object(obj)
url = obj.absolute_url()
title = obj.Title()
item["replace"]["Title"] = get_link(url, value=title)
item["getEffectiveDate"] = self.ulocalized_time(
obj.getEffectiveDate())
item["getExpirationDate"] = self.ulocalized_time(
obj.getExpirationDate())
return item
def folderitem(self, obj, item, index):
"""Augment folder listing item
"""
url = item.get("url")
title = item.get("Title")
item["replace"]["Title"] = get_link(url, value=title)
item["getType"] = _(obj.getType()[0])
item["getDownFrom"] = self.localize_date(obj.getDownFrom())
item["getDownTo"] = self.localize_date(obj.getDownTo())
item["getMaintainer"] = obj.getMaintainer()
status = obj.getCurrentState()
statustext = obj.getCurrentStateI18n()
statusimg = ""
if status == mstatus.CLOSED:
statusimg = "instrumentmaintenance_closed.png"
item["state_class"] = "state-inactive"
elif status == mstatus.CANCELLED:
statusimg = "instrumentmaintenance_cancelled.png"
item["state_class"] = "state-cancelled"
elif status == mstatus.INQUEUE:
statusimg = "instrumentmaintenance_inqueue.png"
item["state_class"] = "state-open"
elif status == mstatus.OVERDUE:
statusimg = "instrumentmaintenance_overdue.png"
item["state_class"] = "state-open"
elif status == mstatus.PENDING:
statusimg = "instrumentmaintenance_pending.png"
item["state_class"] = "state-pending"
item["replace"]["getCurrentState"] = get_image(statusimg,
title=statustext)
return item
def folder_item(self, obj, item, index):
batch = api.get_object(obj)
# Doctor
doctor = get_field_value(batch, "Doctor", None)
item["Doctor"] = doctor and doctor.Title() or ""
item["replace"]["Doctor"] = doctor and get_link(
api.get_url(doctor), doctor.Title())
# Onset Date
onset = get_field_value(batch, "OnsetDate", None)
item["OnsetDate"] = onset and self.listing.ulocalized_time(onset) or ""
# Patient
item["Patient"] = ""
item["getPatientID"] = ""
item["getClientPatientID"] = ""
item["PatientAgeOnsetDate"] = ""
patient = get_field_value(batch, "Patient", None)
if patient:
url = api.get_url(patient)
item["Patient"] = patient.Title()
item["replace"]["Patient"] = get_link(url, patient.Title())
item["getPatientID"] = patient.id
item["replace"]["getPatientID"] = get_link(url, patient.id)
pid = patient.getClientPatientID()
pid_link = pid and get_link(url, pid) or ""
item["getClientPatientID"] = pid or ""
item["replace"]["getClientPatientID"] = pid_link
dob = patient.getBirthDate()
if onset and dob:
try:
age_ymd = get_age_ymd(patient.getBirthDate(), onset)
item["replace"]["PatientAgeOnsetDate"] = age_ymd
except:
# Wrong date??
msg = _("Date of Birth or Case Onset Date are wrong")
img = get_image("exclamation.png", title=msg)
item["replace"]["PatientAgeOnsetDate"] = img
# Display the internal/external icons, but only if the logged-in user
# does not belong to an external client
if not self.is_external_user:
item["before"]["BatchID"] = get_client_aware_html_image(obj)
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item (Batch) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the batch, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
obj = api.get_object(obj)
url = "{}/analysisrequests".format(api.get_url(obj))
bid = api.get_id(obj)
cbid = obj.getClientBatchID()
title = api.get_title(obj)
client = obj.getClient()
created = api.get_creation_date(obj)
date = obj.getBatchDate()
# total sample progress
progress = obj.getProgress()
item["Progress"] = progress
item["replace"]["Progress"] = get_progress_bar_html(progress)
item["BatchID"] = bid
item["ClientBatchID"] = cbid
item["replace"]["BatchID"] = get_link(url, bid)
item["Title"] = title
item["replace"]["Title"] = get_link(url, title)
item["created"] = self.ulocalized_time(created, long_format=True)
item["BatchDate"] = self.ulocalized_time(date, long_format=True)
if client:
client_url = api.get_url(client)
client_name = client.getName()
client_id = client.getClientID()
item["Client"] = client_name
item["ClientID"] = client_id
item["replace"]["Client"] = get_link(client_url, client_name)
item["replace"]["ClientID"] = get_link(client_url, client_id)
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item (Client) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the client, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
obj = api.get_object(obj)
# XXX Refactor expiration to a proper place
# ---------------------------- 8< -------------------------------------
if item.get("review_state", "current") == "current":
# Check expiry date
exdate = obj.getExpiryDate()
if exdate:
expirydate = DT2dt(exdate).replace(tzinfo=None)
if (datetime.today() > expirydate):
# Trigger expiration
self.workflow.doActionFor(obj, "expire")
item["review_state"] = "expired"
item["obj"] = obj
if self.contentFilter.get('review_state', '') \
and item.get('review_state', '') == 'expired':
# This item must be omitted from the list
return None
# ---------------------------- >8 -------------------------------------
url = api.get_url(obj)
id = api.get_id(obj)
item["ID"] = id
item["replace"]["ID"] = get_link(url, value=id)
item["DateSampled"] = self.ulocalized_time(
obj.getDateSampled(), long_format=True)
item["DateReceived"] = self.ulocalized_time(obj.getDateReceived())
item["DateOpened"] = self.ulocalized_time(obj.getDateOpened())
item["ExpiryDate"] = self.ulocalized_time(obj.getExpiryDate())
# Icons
after_icons = ''
if obj.getBlank():
after_icons += get_image(
"blank.png", title=t(_("Blank")))
if obj.getHazardous():
after_icons += get_image(
"hazardous.png", title=t(_("Hazardous")))
if after_icons:
item["after"]["ID"] = after_icons
return item
def folderitem(self, obj, item, index):
obj = api.get_object(obj)
item["replace"].update({
"getFullName":
get_link(item["url"], obj.getFullName()),
"getEmailAddress":
get_email_link(obj.getEmailAddress())
})
return item
def folderitem(self, obj, item, index):
obj = api.get_object(obj)
method = obj.getMethod()
if method:
item["Method"] = api.get_title(method)
item["replace"]["Method"] = get_link_for(method)
item["replace"]["Title"] = get_link(item["url"], item["Title"])
return item
def folderitem(self, obj, item, index):
"""Applies new properties to the item (Client) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the client, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
obj = api.get_object(obj)
url = obj.absolute_url()
title = obj.Title()
item["replace"]["Title"] = get_link(url, value=title)
instruments = obj.getInstruments()
if instruments:
links = map(
lambda i: get_link(i.absolute_url(), i.Title()), instruments)
item["replace"]["Instrument"] = ", ".join(links)
else:
item["Instrument"] = ""
calculation = obj.getCalculation()
if calculation:
title = calculation.Title()
url = calculation.absolute_url()
item["Calculation"] = title
item["replace"]["Calculation"] = get_link(url, value=title)
else:
item["Calculation"] = ""
manual_entry_of_results_allowed = obj.isManualEntryOfResults()
item["ManualEntry"] = manual_entry_of_results_allowed
item["replace"]["ManualEntry"] = " "
if manual_entry_of_results_allowed:
item["replace"]["ManualEntry"] = get_image("ok.png")
return item
def folderitem(self, obj, item, index):
item['getBirthDate'] = self.ulocalized_time(obj.getBirthDate)
# make the columns patient title, patient ID and client patient ID
# redirect to the Analysis Requests of the patient
ars_url = "{}/{}".format(api.get_url(obj), "analysisrequests")
for column in ['Title', 'getPatientID', 'getClientPatientID']:
value = getattr(obj, column, None)
if value:
item["replace"][column] = get_link(ars_url, value)
return item
def folderitem(self, obj, item, index):
"""Augment folder listing item with additional data
"""
url = item.get("url")
title = item.get("DocumentID")
item["replace"]["DocumentID"] = get_link(url, title)
item["FileDownload"] = ""
item["replace"]["FileDownload"] = ""
file = self.get_file(obj)
if file and file.get_size() > 0:
filename = file.filename
download_url = "{}/at_download/File".format(url)
anchor = get_link(download_url, filename)
item["FileDownload"] = filename
item["replace"]["FileDownload"] = anchor
item["DocumentVersion"] = obj.getDocumentVersion()
item["DocumentLocation"] = obj.getDocumentLocation()
item["DocumentType"] = obj.getDocumentType()
return item
def folderitem(self, obj, item, index):
"""
Applies new properties to the item (Client) that is currently being
rendered as a row in the list
:param obj: client to be rendered as a row in the list
:param item: dict representation of the client, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
link_url = "{}/{}".format(item['url'], self.landing_page)
item['replace']['title'] = get_link(link_url, item['title'])
item['replace']['EmailAddress'] = get_email_link(item['EmailAddress'])
return item
