biochem.syringe_pump_init()
elif method == 'set_temp':
biochem.setTemp(int(sys.argv[1]), int(sys.argv[3]))
# LEGACY FUNCTIONS
elif method == 'prime_rotary_valve1':
biochem.prime_rotary_valve1()
elif method == 'prime_rotary_valve2':
biochem.prime_rotary_valve2()
elif method == 'prime_rotary_valve3':
biochem.prime_rotary_valve3()
elif method == 'temperature_control_init':
biochem.temperature_control_init()
# ILLUMINA FUNCTIONS
#
# usage: biochem_utils.py fcnum ilmnDeblock
elif method == 'ilmnDeblock':
biochem.runILMNDeblock(int(sys.argv[1]), sys.argv[3])
# usage: biochem_utils.py fcnum ilmnCycle
elif method == 'ilmnCycle':
biochem.runILMNCycle(int(sys.argv[1]), sys.argv[3])
biochem.prime_fluidics_system() elif method == 'prime_ligase': biochem.prime_ligase() elif method == 'prime_reagent_block': biochem.prime_reagent_block() elif method == 'prime_rotary_valve1': biochem.prime_rotary_valve1() elif method == 'prime_rotary_valve2': biochem.prime_rotary_valve2() elif method == 'prime_rotary_valve3': biochem.prime_rotary_valve3() elif method == 'push_back_to_reagent_chamber': print "INFO\t---\t-\t--> Please, enter reagent (A, N, E) to push back [character]: ", reagent = str(sys.stdin.readline().strip()) # use stdin explicitly and remove trailing newline character if reagent != 'E': print "\rINFO\t---\t-\t--> Please, enter cycle name [string]: ", biochem.cycle = str(sys.stdin.readline().strip())[0:3] # use stdin explicitly and remove trailing newline character biochem.push_back_to_reagent_chamber(reagent) elif method == 'reagent_block_init': biochem.reagent_block_init() elif method == 'rotary_valve1_init':
