def print_as(self, fh=None, source=None, format=None):
if format == 'text':
_print_thing(self, fh=fh)
elif format == 'gff3':
biocodegff.print_biogene( gene=self, fh=fh, source=source )
else:
raise Exception("ERROR: the print_as method only accepts values of 'text' or 'gff3'")
def print_as(self, fh=None, source=None, format=None):
if format == 'text':
_print_thing(self, fh=fh)
elif format == 'gff3':
biocodegff.print_biogene( gene=self, fh=fh, source=source )
else:
raise Exception("ERROR: the print_as method only accepts values of 'text' or 'gff3'")
def print_as(self, fh=None, source=None, format=None, lab=None):
'''
Prints the gene entry in a variety of available formats, with all children.
Is printed to STDOUT unless the fh option is passed. Really, only checks are
done here before passing the info to the biocodegff module.
The options passed will decide the target and format of the print.
--fh = File handle to which we should print (default: STDOUT)
--format = Currently only 'gff3', 'tbl' or the default 'text'.
--source = Required for gff printing
--lab = Required for tbl printing
'''
if format == 'text':
_print_thing(self, fh=fh)
elif format == 'gff3':
biocodegff.print_biogene( gene=self, fh=fh, source=source )
elif format == 'tbl':
biocodetbl.print_biogene( gene=self, fh=fh, lab=lab )
else:
raise Exception("ERROR: the print_as method only accepts values of 'text' or 'gff3'")
def print_as(self, fh=None, source=None, format=None, lab=None):
'''
Prints the gene entry in a variety of available formats, with all children.
Is printed to STDOUT unless the fh option is passed. Really, only checks are
done here before passing the info to the biocodegff module.
The options passed will decide the target and format of the print.
--fh = File handle to which we should print (default: STDOUT)
--format = Currently only 'gff3', 'tbl' or the default 'text'.
--source = Required for gff printing
--lab = Required for tbl printing
'''
if format == 'text':
_print_thing(self, fh=fh)
elif format == 'gff3':
biocodegff.print_biogene( gene=self, fh=fh, source=source )
elif format == 'tbl':
biocodetbl.print_biogene( gene=self, fh=fh, lab=lab )
else:
raise Exception("ERROR: the print_as method only accepts values of 'text' or 'gff3'")
