def resolve_mapping_plate_well(self, source_type, labels):
slot_labels = [make_unique_key(*l.split(":")) for l in labels]
back_to_label = dict(it.izip(slot_labels, labels))
mapping = {}
self.logger.info("start selecting %s" % source_type.get_ome_table())
# FIXME this is not going to scale
objs = self.kb.get_objects(source_type)
for o in objs:
if o.containerSlotLabelUK in slot_labels:
mapping[back_to_label[o.containerSlotLabelUK]] = o.id
self.logger.info("done selecting %s" % source_type.get_ome_table())
return mapping
def build_key(r):
lane = self.preloaded_lanes[r["lane"]]
if r["tag"]:
return make_unique_key(r["tag"], lane.label)
else:
return make_unique_key(lane.label)
def build_key(dc, r): data_collection = dc data_sample = self.preloaded_data_samples[r['data_sample']] return make_unique_key(data_collection.id, data_sample.id)
def build_key(r):
flow_cell = self.preloaded_flowcells[r['flow_cell']]
return make_unique_key(flow_cell.label, r['slot'])
def build_key(dc, r):
data_collection = dc
data_sample = self.preloaded_data_samples[r['data_sample']]
return make_unique_key(data_collection.id, data_sample.id)
def build_key(r): plate = self.preloaded_plates[r['plate']] return make_unique_key(plate.label, r['label'])
def build_key(vc, r):
vessels_collection = vc
vessel = self.preloaded_vessels[r['vessel']]
return make_unique_key(vessels_collection.id, vessel.id)
def build_key(r):
lane = self.preloaded_lanes[r['lane']]
if r['tag']:
return make_unique_key(r['tag'], lane.label)
else:
return make_unique_key(lane.label)
def build_key(r):
plate = self.preloaded_plates[r['plate']]
return make_unique_key(plate.label, r['label'])
def build_key(vc, r): vessels_collection = vc vessel = self.preloaded_vessels[r['vessel']] return make_unique_key(vessels_collection.id, vessel.id)
def build_key(r): flow_cell = self.preloaded_flowcells[r['flow_cell']] return make_unique_key(flow_cell.label, r['slot'])
