def test_serialize():
"""ephys.locations: Test serialize functionality"""
from bluepyopt.ephys.locations import (
NrnSeclistCompLocation,
NrnSeclistLocation,
NrnSeclistSecLocation,
NrnSomaDistanceCompLocation)
seclist_name, sec_index, comp_x, soma_distance = 'somatic', 0, 0.5, 800
locations = (
NrnSeclistCompLocation('NrnSeclistCompLocation',
seclist_name, sec_index, comp_x),
NrnSeclistLocation(
'NrnSeclistLocation', seclist_name),
NrnSeclistSecLocation(
'NrnSeclistSecLocation', seclist_name, sec_index),
NrnSomaDistanceCompLocation(
'NrnSomaDistanceCompLocation', soma_distance, seclist_name),)
for loc in locations:
serialized = loc.to_dict()
assert isinstance(json.dumps(serialized), str)
deserialized = instantiator(serialized)
assert isinstance(deserialized, loc.__class__)
assert deserialized.seclist_name == seclist_name
assert deserialized.name == loc.__class__.__name__
def test_serialize():
"""ephys.locations: Test serialize functionality"""
from bluepyopt.ephys.locations import (
NrnSeclistCompLocation,
NrnSeclistLocation,
NrnSeclistSecLocation,
NrnSomaDistanceCompLocation,
)
seclist_name, sec_index, comp_x, soma_distance = "somatic", 0, 0.5, 800
locations = (
NrnSeclistCompLocation("NrnSeclistCompLocation", seclist_name,
sec_index, comp_x),
NrnSeclistLocation("NrnSeclistLocation", seclist_name),
NrnSeclistSecLocation("NrnSeclistSecLocation", seclist_name,
sec_index),
NrnSomaDistanceCompLocation("NrnSomaDistanceCompLocation",
soma_distance, seclist_name),
)
for loc in locations:
serialized = loc.to_dict()
nt.ok_(isinstance(json.dumps(serialized), str))
deserialized = instantiator(serialized)
nt.ok_(isinstance(deserialized, loc.__class__))
nt.eq_(deserialized.seclist_name, seclist_name)
nt.eq_(deserialized.name, loc.__class__.__name__)
def make_parameters():
value, frozen, bounds, param_name = 65, False, [0,
100.0], 'gSKv3_1bar_SKv3_1'
value_scaler = ephys.parameterscalers.NrnSegmentLinearScaler()
locations = (
NrnSeclistLocation('Location0', 'somatic'),
NrnSeclistLocation('Location1', 'apical'),
)
parameters = (
NrnGlobalParameter('NrnGlobalParameter', value, frozen, bounds,
param_name),
NrnSectionParameter('NrnSectionParameter', value, frozen, bounds,
param_name, value_scaler, locations),
NrnRangeParameter('NrnRangeParameter', value, frozen, bounds,
param_name, value_scaler, locations),
)
return parameters
def test_serialize():
value, frozen, bounds, param_name = 65, False, [0, 100.0], 'gSKv3_1bar_SKv3_1'
value_scaler = ephys.parameterscalers.NrnSegmentLinearScaler()
locations = (NrnSeclistLocation('Location0', 'somatic'),
NrnSeclistLocation('Location1', 'apical'),
)
parameters = (
NrnGlobalParameter('NrnGlobalParameter', value, frozen, bounds, param_name),
NrnSectionParameter(
'NrnSectionParameter', value, frozen, bounds, param_name, value_scaler, locations ),
NrnRangeParameter(
'NrnRangeParameter', value, frozen, bounds, param_name, value_scaler, locations),
)
for param in parameters:
serialized = param.to_dict()
nt.ok_(isinstance(json.dumps(serialized), str))
deserialized = instantiator(serialized)
nt.ok_(isinstance(deserialized, param.__class__))
nt.eq_(deserialized.name, param.__class__.__name__)
def make_parameters():
"""Create parameters"""
value, frozen, bounds, param_name = (
65,
False,
[0, 100.0],
"gSKv3_1bar_SKv3_1",
)
value_scaler = ephys.parameterscalers.NrnSegmentLinearScaler()
locations = (
NrnSeclistLocation("Location0", "somatic"),
NrnSeclistLocation("Location1", "apical"),
)
parameters = (
NrnGlobalParameter(
"NrnGlobalParameter", value, frozen, bounds, param_name
),
NrnSectionParameter(
"NrnSectionParameter",
value,
frozen,
bounds,
param_name,
value_scaler,
locations,
),
NrnRangeParameter(
"NrnRangeParameter",
value,
frozen,
bounds,
param_name,
value_scaler,
locations,
),
)
return parameters