def test_integration():
circuit = test_module.Circuit(str(TEST_DATA_DIR / 'circuit_config.json'))
node_ids = circuit.nodes.ids({"mtype": ["L6_Y", "L2_X"]})
edge_ids = circuit.edges.afferent_edges(node_ids)
edge_props = circuit.edges.get(edge_ids,
properties=["syn_weight", "delay"])
edge_reduced = edge_ids.limit(2)
edge_props_reduced = edge_props.loc[edge_reduced]
assert edge_props_reduced["syn_weight"].tolist() == [1, 1]
def test_all():
circuit = test_module.Circuit(str(TEST_DATA_DIR / 'circuit_config.json'))
assert (circuit.config['networks']['nodes'][0] == {
'nodes_file': str(TEST_DATA_DIR / 'nodes.h5'),
'node_types_file': str(TEST_DATA_DIR / 'node_types.csv'),
})
assert isinstance(circuit.nodes, Nodes)
assert isinstance(circuit.edges, dict)
assert list(circuit.edges) == ['default']
assert isinstance(circuit.edges['default'], EdgePopulation)
assert sorted(list(circuit.nodes)) == ['default', 'default2']
assert isinstance(circuit.nodes['default'], NodePopulation)
assert isinstance(circuit.nodes['default2'], NodePopulation)
assert (sorted(circuit.node_sets) == sorted(
json.load(open(str(TEST_DATA_DIR / 'node_sets.json')))))
def test_all():
circuit = test_module.Circuit(str(TEST_DATA_DIR / "circuit_config.json"))
assert circuit.config["networks"]["nodes"][0] == {
"nodes_file": str(TEST_DATA_DIR / "nodes.h5"),
"node_types_file": str(TEST_DATA_DIR / "node_types.csv"),
"populations": {
"default": {}
},
}
assert isinstance(circuit.nodes, Nodes)
assert isinstance(circuit.edges, Edges)
assert list(circuit.edges) == ["default", "default2"]
assert isinstance(circuit.edges["default"], EdgePopulation)
assert isinstance(circuit.edges["default2"], EdgePopulation)
assert sorted(list(circuit.nodes)) == ["default", "default2"]
assert isinstance(circuit.nodes["default"], NodePopulation)
assert isinstance(circuit.nodes["default2"], NodePopulation)
assert sorted(circuit.node_sets) == sorted(
json.load(open(str(TEST_DATA_DIR / "node_sets.json"))))
def test_no_node_set():
circuit = test_module.Circuit(
str(TEST_DATA_DIR / 'circuit_config_duplicate.json'))
# replace the _config dict with random one that does not contain "node_sets_file" key
circuit._config = {"key": "value"}
assert circuit.node_sets == {}
def test_duplicate_edge_populations():
circuit = test_module.Circuit(
str(TEST_DATA_DIR / 'circuit_config_duplicate.json'))
with pytest.raises(BluepySnapError):
circuit.edges
def test_duplicate_node_populations():
circuit = test_module.Circuit(
str(TEST_DATA_DIR / "circuit_config_duplicate.json"))
with pytest.raises(BluepySnapError):
list(circuit.nodes)
