def macro_sweep_test(target):
logging.info(
'macro_sweep_test initiated with target {:0.4f}'.format(target))
RE = RunEngine({})
bec = BestEffortCallback()
RE.subscribe(bec)
RE.waiting_hook = ProgressBarManager()
RE(run_wrapper(rel_smooth_sweep_test(tst_23, target)))
def pbar_manager_for_notebook(delay_draw: float = 0.2) -> ProgressBarManager:
"""
Helper method for generating managers when using notebooks.
Returns
-------
ProgressBarManager
A manager that creates progress bars for Jupuyter notebooks
"""
return ProgressBarManager(
partial(NotebookProgressBar, delay_draw=delay_draw))
def macro_RSXS_smooth_sweep(stroke_height,
stroke_spacing,
n_strokes,
both_directions=True):
"""
macro_RSXS_smooth_sweep
This method wraps up the bluesky/ophyd codeand allows users to drive
the LU20 experiment with minimal code overhead. It contains the following
bluesky plan.
This bluesky plan moves a 2-axis actuator across multiple traversals of a
sample. The plan traverses the entirety of the stroke_height (y-axis) and
after each traversal, steps in the x-axis by the stroke_spacing.It may be
configured to scan in only a single direction and shutter the beam for the
opposite direction. This removes the shutter at the beginning of the plan
and reinserts it at the end. At the end of the plan, the sample is moved to
its original y-axis position but with an x-axis posiiton ready for the next
run. For more details about the path, see the documentation of the
xy_sequencer, the method that generates the sample's path.
Parameters
----------
stroke_height : float
Vertical distance (y-axs) of each stroke.
stroke_spacing : float
Horizontal distance between individual strokes.
n_strokes : int
Number of strokes to complete.
both_directions : bool, optional
Defaults to True. If this value is true the beam will be scanned across
the sample while moving in both vertical directions. If false, the beam
is only scanned in a single direction.
"""
RE = RunEngine({})
bec = BestEffortCallback()
RE.subscribe(bec)
RE.waiting_hook = ProgressBarManager()
RE(
run_wrapper(
rel_smooth_sweep(mot_x=rsxs_sample_x,
mot_y=rsxs_sample_y,
shutter=shutter,
stroke_height=stroke_height,
stroke_spacing=stroke_spacing,
n_strokes=n_strokes,
both_directions=both_directions)))
def test_mv_progress(RE, hw):
motor1 = hw.motor1
motor2 = hw.motor2
RE.waiting_hook = ProgressBarManager()
# moving time > delay_draw
motor1.delay = 0.5
motor1.delay = 0.5
RE(mv(motor1, 0, motor2, 0))
# moving time < delay_draw
motor1.delay = 0.01
motor1.delay = 0.01
RE(mv(motor1, 0, motor2, 0))
def test_mv_progress(fresh_RE):
RE = fresh_RE
RE.waiting_hook = ProgressBarManager()
motor1 = Mover('motor1', OrderedDict([('motor1', lambda x: x),
('motor1_setpoint', lambda x: x)]),
{'x': 0})
motor2 = Mover('motor2', OrderedDict([('motor2', lambda x: x),
('motor2_setpoint', lambda x: x)]),
{'x': 0})
assert RE.waiting_hook.delay_draw == 0.2
# moving time > delay_draw
motor1._fake_sleep = 0.5
motor1._fake_sleep = 0.5
RE(mv(motor1, 0, motor2, 0))
# moving time < delay_draw
motor1._fake_sleep = 0.01
motor1._fake_sleep = 0.01
RE(mv(motor1, 0, motor2, 0))
# keep track of callback subscriptions
callback_db = {}
# set up databroker
import databroker
db = databroker.Broker.named('mongoCat')
callback_db['Broker'] = RE.subscribe(db.insert)
# Set up SupplementalData.
from bluesky import SupplementalData
sd = SupplementalData()
RE.preprocessors.append(sd)
# Add a progress bar.
from bluesky.utils import ProgressBarManager
pbar_manager = ProgressBarManager()
RE.waiting_hook = pbar_manager
# Register bluesky IPython magics.
from IPython import get_ipython
from bluesky.magics import BlueskyMagics
get_ipython().register_magics(BlueskyMagics)
get_ipython().magic("automagic 0") # Turn off automagic
# Set up the BestEffortCallback.
from bluesky.callbacks.best_effort import BestEffortCallback
bec = BestEffortCallback()
callback_db['BestEffortCallback'] = RE.subscribe(bec)
peaks = bec.peaks # just as alias for less typing
bec.disable_baseline()
def macro_VT50_smooth_sweep(short_edge_end,
long_edge_end,
n_strokes,
scalar=1.0,
min_base=.05,
min_v=.07,
both_directions=True):
"""
macro_RSXS_smooth_sweep
This method wraps up the bluesky/ophyd codeand allows users to drive
the LT00 experiment with minimal code overhead. It contains the following
bluesky plan.
This bluesky plan moves a 3-axis actuator across multiple traversals of a
sample. The plan traverses the space enclosed in a plane defined by the
motors' starting location and the two positions short_edge_end and
long_edge_end.
Parameters
----------
short_edge_end : tuple or np.array
3-length (x,y,z) iteralbe specifying the end location of the short
steps.
long_edge_end : tuple or np.array
3-length (x,y,z) iteralbe specifying the end location of the long
sweep.
n_strokes : int
Number of strokes to complete.
scalar : float
Scale the motor velocities by this factor. Defaults to 1.0.
min_base : float
Set motor's Base velocity. Larger numbers means the motor accelerates
and decelerates more quickly. This value must be less than min_v.
Values larger than 2 are not recommended.
min_v : float
Set the motor's minimum velocity. Must be larger than min_base. Larger
numbers means the motor accelerates and decelerates more quickly.
Values larger than 2 are not recommended.
"""
RE = RunEngine({})
bec = BestEffortCallback()
RE.subscribe(bec)
RE.waiting_hook = ProgressBarManager()
RE(
run_wrapper(
rel_smooth_sweep(mot_x=sample_x,
mot_y=sample_y,
mot_z=sample_z,
shutter=shutter,
short_edge_end=short_edge_end,
long_edge_end=long_edge_end,
n_strokes=n_strokes,
scalar=scalar,
min_base=min_base,
min_v=min_v)))
get_ipython().magic("matplotlib qt")
# Create a databroker backed by temporary files
db = Broker.named("mycat")
def spy(name, doc):
pass
# Insert all metadata/data captured into db.
RE.subscribe(db.insert)
RE.subscribe(spy)
# Make a progress bar
RE.waiting_hook = ProgressBarManager()
# Running in simulation mode?
SIM_MODE = True
with SignalCollector(), NamedDevices(), TmpFilenameScheme():
# All Signals with a sim:// prefix or without a prefix will come from this provider
if SIM_MODE:
sim = SignalCollector.add_provider(sim=SimProvider(), set_default=True)
else:
# Do something like this here
# ca = SignalCollector.add_provider(ca=CAProvider(), set_default=True)
pass
# A PMAC has a trajectory scan interface and 16 Co-ordinate systems
# which may have motors in them
pmac1 = pmac.PMAC("BLxxI-MO-PMAC-01:")
def configure_base(user_ns,
broker_name,
*,
bec=True,
epics_context=True,
magics=True,
mpl=True,
ophyd_logging=True,
pbar=True):
"""
Perform base setup and instantiation of important objects.
This factory function instantiates the following and adds them to the
namespace:
* ``RE`` -- a RunEngine
* ``db`` -- a Broker (from "databroker"), subscribe to ``RE``
* ``bec`` -- a BestEffortCallback, subscribed to ``RE``
* ``peaks`` -- an alias for ``bec.peaks``
* ``sd`` -- a SupplementalData preprocessor, added to ``RE.preprocessors``
* ``pbar_maanger`` -- a ProgressBarManager, set as the ``RE.waiting_hook``
And it performs some low-level configuration:
* creates a context in ophyd's control layer (``ophyd.setup_ophyd()``)
* turns out interactive plotting (``matplotlib.pyplot.ion()``)
* bridges the RunEngine and Qt event loops
(``bluesky.utils.install_kicker()``)
* logs ERROR-level log message from ophyd to the standard out
Parameters
----------
user_ns: dict
a namespace --- for example, ``get_ipython().user_ns``
broker_name : Union[str, Broker]
Name of databroker configuration or a Broker instance.
bec : boolean, optional
True by default. Set False to skip BestEffortCallback.
epics_context : boolean, optional
True by default. Set False to skip ``setup_ophyd()``.
magics : boolean, optional
True by default. Set False to skip registration of custom IPython
magics.
mpl : boolean, optional
True by default. Set False to skip matplotlib ``ion()`` at event-loop
bridging.
ophyd_logging : boolean, optional
True by default. Set False to skip ERROR-level log configuration for
ophyd.
pbar : boolean, optional
True by default. Set false to skip ProgressBarManager.
Returns
-------
names : list
list of names added to the namespace
Examples
--------
Configure IPython for CHX.
>>>> configure_base(get_ipython().user_ns, 'chx');
"""
ns = {} # We will update user_ns with this at the end.
# Test if we are in Jupyter or IPython:
in_jupyter = user_ns['get_ipython']().has_trait('kernel')
# Set up a RunEngine and use metadata backed by a sqlite file.
from bluesky import RunEngine
from bluesky.utils import get_history
# if RunEngine already defined grab it
# useful when users make their own custom RunEngine
if 'RE' in user_ns:
RE = user_ns['RE']
else:
RE = RunEngine(get_history())
ns['RE'] = RE
# Set up SupplementalData.
# (This is a no-op until devices are added to it,
# so there is no need to provide a 'skip_sd' switch.)
from bluesky import SupplementalData
sd = SupplementalData()
RE.preprocessors.append(sd)
ns['sd'] = sd
if isinstance(broker_name, str):
# Set up a Broker.
from databroker import Broker
db = Broker.named(broker_name)
ns['db'] = db
else:
db = broker_name
RE.subscribe(db.insert)
if pbar and not in_jupyter:
# Add a progress bar.
from bluesky.utils import ProgressBarManager
pbar_manager = ProgressBarManager()
RE.waiting_hook = pbar_manager
ns['pbar_manager'] = pbar_manager
if magics:
# Register bluesky IPython magics.
from bluesky.magics import BlueskyMagics
get_ipython().register_magics(BlueskyMagics)
if bec:
# Set up the BestEffortCallback.
from bluesky.callbacks.best_effort import BestEffortCallback
_bec = BestEffortCallback()
bec = _bec
RE.subscribe(_bec)
if in_jupyter:
_bec.disable_plots()
ns['bec'] = _bec
ns['peaks'] = _bec.peaks # just as alias for less typing
if mpl:
# Import matplotlib and put it in interactive mode.
import matplotlib.pyplot as plt
ns['plt'] = plt
plt.ion()
# Commented to allow more intelligent setting of kickers (for Jupyter and IPython):
## Make plots update live while scans run.
# from bluesky.utils import install_kicker
# install_kicker()
# Make plots update live while scans run.
if in_jupyter:
from bluesky.utils import install_nb_kicker
install_nb_kicker()
else:
from bluesky.utils import install_qt_kicker
install_qt_kicker()
if not ophyd_logging:
# Turn on error-level logging, particularly useful for knowing when
# pyepics callbacks fail.
import logging
import ophyd.ophydobj
ch = logging.StreamHandler()
ch.setLevel(logging.ERROR)
ophyd.ophydobj.logger.addHandler(ch)
# convenience imports
# some of the * imports are for 'back-compatibility' of a sort -- we have
# taught BL staff to expect LiveTable and LivePlot etc. to be in their
# namespace
import numpy as np
ns['np'] = np
import bluesky.callbacks
ns['bc'] = bluesky.callbacks
import_star(bluesky.callbacks, ns)
import bluesky.plans
ns['bp'] = bluesky.plans
import_star(bluesky.plans, ns)
import bluesky.plan_stubs
ns['bps'] = bluesky.plan_stubs
import_star(bluesky.plan_stubs, ns)
# special-case the commonly-used mv / mvr and its aliases mov / movr4
ns['mv'] = bluesky.plan_stubs.mv
ns['mvr'] = bluesky.plan_stubs.mvr
ns['mov'] = bluesky.plan_stubs.mov
ns['movr'] = bluesky.plan_stubs.movr
import bluesky.preprocessors
ns['bpp'] = bluesky.preprocessors
import bluesky.callbacks.broker
import_star(bluesky.callbacks.broker, ns)
import bluesky.simulators
import_star(bluesky.simulators, ns)
user_ns.update(ns)
return list(ns)
class BlueskyMagics(Magics, metaclass=MetaclassForClassProperties):
"""
IPython magics for bluesky.
To install:
>>> ip = get_ipython()
>>> ip.register_magics(BlueskyMagics)
Optionally configure default detectors and positioners by setting
the class attributes:
* ``BlueskyMagics.detectors``
* ``BlueskyMagics.positioners``
For more advanced configuration, access the magic's RunEngine instance and
ProgressBarManager instance:
* ``BlueskyMagics.RE``
* ``BlueskyMagics.pbar_manager``
"""
RE = RunEngine({}, loop=asyncio.new_event_loop())
pbar_manager = ProgressBarManager()
def _ensure_idle(self):
if self.RE.state != 'idle':
print('The RunEngine invoked by magics cannot be resumed.')
print('Aborting...')
self.RE.abort()
@line_magic
def mov(self, line):
if len(line.split()) % 2 != 0:
raise TypeError("Wrong parameters. Expected: "
"%mov motor position (or several pairs like that)")
args = []
for motor, pos in partition(2, line.split()):
args.append(eval(motor, self.shell.user_ns))
args.append(eval(pos, self.shell.user_ns))
plan = bps.mv(*args)
self.RE.waiting_hook = self.pbar_manager
try:
self.RE(plan)
except RunEngineInterrupted:
...
self.RE.waiting_hook = None
self._ensure_idle()
return None
@line_magic
def movr(self, line):
if len(line.split()) % 2 != 0:
raise TypeError("Wrong parameters. Expected: "
"%mov motor position (or several pairs like that)")
args = []
for motor, pos in partition(2, line.split()):
args.append(eval(motor, self.shell.user_ns))
args.append(eval(pos, self.shell.user_ns))
plan = bps.mvr(*args)
self.RE.waiting_hook = self.pbar_manager
try:
self.RE(plan)
except RunEngineInterrupted:
...
self.RE.waiting_hook = None
self._ensure_idle()
return None
@line_magic
def ct(self, line):
# If the deprecated BlueskyMagics.detectors list is non-empty, it has
# been configured by the user, and we must revert to the old behavior.
if type(self).detectors:
if line.strip():
dets = eval(line, self.shell.user_ns)
else:
dets = type(self).detectors
else:
# new behaviour
devices_dict = get_labeled_devices(user_ns=self.shell.user_ns)
if line.strip():
if '[' in line or ']' in line:
raise ValueError("It looks like you entered a list like "
"`%ct [motors, detectors]` "
"Magics work a bit differently than "
"normal Python. Enter "
"*space-separated* labels like "
"`%ct motors detectors`.")
# User has provided a white list of labels like
# %ct label1 label2
labels = line.strip().split()
else:
labels = ['detectors']
dets = []
for label in labels:
dets.extend(obj for _, obj in devices_dict.get(label, []))
plan = bp.count(dets)
print("[This data will not be saved. "
"Use the RunEngine to collect data.]")
try:
self.RE(plan, _ct_callback)
except RunEngineInterrupted:
...
self._ensure_idle()
return None
FMT_PREC = 6
@line_magic
def wa(self, line):
"List positioner info. 'wa' stands for 'where all'."
# If the deprecated BlueskyMagics.positioners list is non-empty, it has
# been configured by the user, and we must revert to the old behavior.
if type(self).positioners:
if line.strip():
positioners = eval(line, self.shell.user_ns)
else:
positioners = type(self).positioners
if len(positioners) > 0:
_print_positioners(positioners, precision=self.FMT_PREC)
else:
# new behaviour
devices_dict = get_labeled_devices(user_ns=self.shell.user_ns)
if line.strip():
if '[' in line or ']' in line:
raise ValueError("It looks like you entered a list like "
"`%wa [motors, detectors]` "
"Magics work a bit differently than "
"normal Python. Enter "
"*space-separated* labels like "
"`%wa motors detectors`.")
# User has provided a white list of labels like
# %wa label1 label2
labels = line.strip().split()
else:
# Show all labels.
labels = list(devices_dict.keys())
for label in labels:
print(label)
try:
devices = devices_dict[label]
all_children = [(k, getattr(obj, k)) for _, obj in devices
for k in getattr(obj, 'read_attrs', [])]
except KeyError:
print('<no matches for this label>')
continue
# Search devices and all their children for positioners.
positioners = [
dev for _, dev in devices + all_children
if is_positioner(dev)
]
if positioners:
_print_positioners(positioners,
precision=self.FMT_PREC,
prefix=" " * 2)
print() # blank line
# Just display the top-level devices in the namespace (no
# children).
_print_devices(devices, prefix=" " * 2)
print() # blank line
class BlueskyMagics(Magics):
"""
IPython magics for bluesky.
To install:
>>> ip = get_ipython()
>>> ip.register_magics(BlueskyMagics)
Optionally configure default detectors and positioners by setting
the class attributes:
* ``BlueskyMagics.detectors``
* ``BlueskyMagics.positioners``
For more advanced configuration, access the magic's RunEngine instance and
ProgressBarManager instance:
* ``BlueskyMagics.RE``
* ``BlueskyMagics.pbar_manager``
"""
RE = RunEngine({}, loop=asyncio.new_event_loop())
pbar_manager = ProgressBarManager()
def _ensure_idle(self):
if self.RE.state != 'idle':
print('The RunEngine invoked by magics cannot be resumed.')
print('Aborting...')
self.RE.abort()
@line_magic
def mov(self, line):
if len(line.split()) % 2 != 0:
raise TypeError("Wrong parameters. Expected: "
"%mov motor position (or several pairs like that)")
args = []
for motor, pos in partition(2, line.split()):
args.append(eval(motor, self.shell.user_ns))
args.append(eval(pos, self.shell.user_ns))
plan = bps.mv(*args)
self.RE.waiting_hook = self.pbar_manager
try:
self.RE(plan)
except RunEngineInterrupted:
...
self.RE.waiting_hook = None
self._ensure_idle()
return None
@line_magic
def movr(self, line):
if len(line.split()) % 2 != 0:
raise TypeError("Wrong parameters. Expected: "
"%mov motor position (or several pairs like that)")
args = []
for motor, pos in partition(2, line.split()):
args.append(eval(motor, self.shell.user_ns))
args.append(eval(pos, self.shell.user_ns))
plan = bps.mvr(*args)
self.RE.waiting_hook = self.pbar_manager
try:
self.RE(plan)
except RunEngineInterrupted:
...
self.RE.waiting_hook = None
self._ensure_idle()
return None
detectors = []
@line_magic
def ct(self, line):
if line.strip():
dets = eval(line, self.shell.user_ns)
else:
dets = self.detectors
plan = bp.count(dets)
print("[This data will not be saved. "
"Use the RunEngine to collect data.]")
try:
self.RE(plan, _ct_callback)
except RunEngineInterrupted:
...
self._ensure_idle()
return None
positioners = []
FMT_PREC = 6
@line_magic
def wa(self, line):
"List positioner info. 'wa' stands for 'where all'."
if line.strip():
positioners = eval(line, self.shell.user_ns)
else:
positioners = self.positioners
positioners = sorted(set(positioners), key=attrgetter('name'))
values = []
for p in positioners:
try:
values.append(p.position)
except Exception as exc:
values.append(exc)
headers = ['Positioner', 'Value', 'Low Limit', 'High Limit', 'Offset']
LINE_FMT = '{: <30} {: <11} {: <11} {: <11} {: <11}'
lines = []
lines.append(LINE_FMT.format(*headers))
for p, v in zip(positioners, values):
if not isinstance(v, Exception):
try:
prec = p.precision
except Exception:
prec = self.FMT_PREC
value = np.round(v, decimals=prec)
try:
low_limit, high_limit = p.limits
except Exception as exc:
low_limit = high_limit = exc.__class__.__name__
else:
low_limit = np.round(low_limit, decimals=prec)
high_limit = np.round(high_limit, decimals=prec)
try:
offset = p.user_offset.get()
except Exception as exc:
offset = exc.__class__.__name__
else:
offset = np.round(offset, decimals=prec)
else:
value = v.__class__.__name__ # e.g. 'DisconnectedError'
low_limit = high_limit = offset = ''
lines.append(LINE_FMT.format(p.name, value, low_limit, high_limit,
offset))
print('\n'.join(lines))
def configure_base(
user_ns,
broker_name,
*,
bec=True,
epics_context=False,
magics=True,
mpl=True,
configure_logging=True,
pbar=True,
ipython_exc_logging=True,
):
"""
Perform base setup and instantiation of important objects.
This factory function instantiates essential objects to data collection
environments at NSLS-II and adds them to the current namespace. In some
cases (documented below), it will check whether certain variables already
exist in the user name space, and will avoid creating them if so. The
following are added:
* ``RE`` -- a RunEngine
This is created only if an ``RE`` instance does not currently exist in
the namespace.
* ``db`` -- a Broker (from "databroker"), subscribe to ``RE``
* ``bec`` -- a BestEffortCallback, subscribed to ``RE``
* ``peaks`` -- an alias for ``bec.peaks``
* ``sd`` -- a SupplementalData preprocessor, added to ``RE.preprocessors``
* ``pbar_maanger`` -- a ProgressBarManager, set as the ``RE.waiting_hook``
And it performs some low-level configuration:
* creates a context in ophyd's control layer (``ophyd.setup_ophyd()``)
* turns on interactive plotting (``matplotlib.pyplot.ion()``)
* bridges the RunEngine and Qt event loops
(``bluesky.utils.install_kicker()``)
* logs ERROR-level log message from ophyd to the standard out
Parameters
----------
user_ns: dict
a namespace --- for example, ``get_ipython().user_ns``
broker_name : Union[str, Broker]
Name of databroker configuration or a Broker instance.
bec : boolean, optional
True by default. Set False to skip BestEffortCallback.
epics_context : boolean, optional
True by default. Set False to skip ``setup_ophyd()``.
magics : boolean, optional
True by default. Set False to skip registration of custom IPython
magics.
mpl : boolean, optional
True by default. Set False to skip matplotlib ``ion()`` at event-loop
bridging.
configure_logging : boolean, optional
True by default. Set False to skip INFO-level logging to
/var/logs/bluesky/bluesky.log.
pbar : boolean, optional
True by default. Set false to skip ProgressBarManager.
ipython_exc_logging : boolean, optional
True by default. Exception stack traces will be written to IPython
log file when IPython logging is enabled.
Returns
-------
names : list
list of names added to the namespace
Examples
--------
Configure IPython for CHX.
>>>> configure_base(get_ipython().user_ns, 'chx');
"""
ns = {} # We will update user_ns with this at the end.
# Protect against double-subscription.
SENTINEL = "__nslsii_configure_base_has_been_run"
if user_ns.get(SENTINEL):
raise RuntimeError(
"configure_base should only be called once per process.")
ns[SENTINEL] = True
# Set up a RunEngine and use metadata backed by files on disk.
from bluesky import RunEngine, __version__ as bluesky_version
if LooseVersion(bluesky_version) >= LooseVersion("1.6.0"):
# current approach using PersistentDict
from bluesky.utils import PersistentDict
directory = os.path.expanduser("~/.config/bluesky/md")
os.makedirs(directory, exist_ok=True)
md = PersistentDict(directory)
else:
# legacy approach using HistoryDict
from bluesky.utils import get_history
md = get_history()
# if RunEngine already defined grab it
# useful when users make their own custom RunEngine
if "RE" in user_ns:
RE = user_ns["RE"]
else:
RE = RunEngine(md)
ns["RE"] = RE
# Set up SupplementalData.
# (This is a no-op until devices are added to it,
# so there is no need to provide a 'skip_sd' switch.)
from bluesky import SupplementalData
sd = SupplementalData()
RE.preprocessors.append(sd)
ns["sd"] = sd
if isinstance(broker_name, str):
# Set up a Broker.
from databroker import Broker
db = Broker.named(broker_name)
ns["db"] = db
else:
db = broker_name
RE.subscribe(db.insert)
if pbar:
# Add a progress bar.
from bluesky.utils import ProgressBarManager
pbar_manager = ProgressBarManager()
RE.waiting_hook = pbar_manager
ns["pbar_manager"] = pbar_manager
if magics:
# Register bluesky IPython magics.
from bluesky.magics import BlueskyMagics
get_ipython().register_magics(BlueskyMagics)
if bec:
# Set up the BestEffortCallback.
from bluesky.callbacks.best_effort import BestEffortCallback
_bec = BestEffortCallback()
RE.subscribe(_bec)
ns["bec"] = _bec
ns["peaks"] = _bec.peaks # just as alias for less typing
if mpl:
# Import matplotlib and put it in interactive mode.
import matplotlib.pyplot as plt
ns["plt"] = plt
plt.ion()
# Make plots update live while scans run.
if LooseVersion(bluesky_version) < LooseVersion("1.6.0"):
from bluesky.utils import install_kicker
install_kicker()
if epics_context:
# Create a context in the underlying EPICS client.
from ophyd import setup_ophyd
setup_ophyd()
if configure_logging:
configure_bluesky_logging(ipython=get_ipython())
if ipython_exc_logging:
# IPython logging must be enabled separately
from nslsii.common.ipynb.logutils import log_exception
configure_ipython_exc_logging(exception_logger=log_exception,
ipython=get_ipython())
# always configure %xmode minimal
get_ipython().magic("xmode minimal")
# convenience imports
# some of the * imports are for 'back-compatibility' of a sort -- we have
# taught BL staff to expect LiveTable and LivePlot etc. to be in their
# namespace
import numpy as np
ns["np"] = np
import bluesky.callbacks
ns["bc"] = bluesky.callbacks
import_star(bluesky.callbacks, ns)
import bluesky.plans
ns["bp"] = bluesky.plans
import_star(bluesky.plans, ns)
import bluesky.plan_stubs
ns["bps"] = bluesky.plan_stubs
import_star(bluesky.plan_stubs, ns)
# special-case the commonly-used mv / mvr and its aliases mov / movr4
ns["mv"] = bluesky.plan_stubs.mv
ns["mvr"] = bluesky.plan_stubs.mvr
ns["mov"] = bluesky.plan_stubs.mov
ns["movr"] = bluesky.plan_stubs.movr
import bluesky.preprocessors
ns["bpp"] = bluesky.preprocessors
import bluesky.callbacks.broker
import_star(bluesky.callbacks.broker, ns)
import bluesky.simulators
import_star(bluesky.simulators, ns)
user_ns.update(ns)
return list(ns)