}
pyrcc_opts = {
'infile': join('qrc', 'cat_rc.qrc'),
'outfile': join('cat', 'cat_rc.py'),
'pyrccbin': 'pyrcc5'
}
help_opts = {
'infile': join('doc', 'annotationtool.qhcp'),
'outfile': join('cat', 'gui', 'helpbrowser', 'annotationtool.qhc'),
'qcollectiongeneator': 'qcollectiongenerator'
}
# python package to distribute
dfiles = build_helpers.get_data_files("./cat")
# no ui files in package data for py2app
uifiles = build_helpers.find_uifiles('./cat')
dfiles.append(uifiles)
setup(
app=['CellAnnotator.py'],
#name='CellAnnotator',
version=version.version,
description=('Interactive Tool for fast and intuitive'
' classifier training'),
author='Rudolf Hoefler',
author_email='*****@*****.**',
packages=build_helpers.find_submodules("./cat", "cat"),
data_files=dfiles,
options={
"packages": ["h5py","skimage","sklearn", "PIL"],
"arch": "x86_64",
"matplotlib_backends": ["qt5agg"]}
pyrcc_opts = {'infile': join('qrc', 'cat_rc.qrc'),
'outfile': join('cat', 'cat_rc.py'),
'pyrccbin': 'pyrcc5'}
help_opts = {'infile': join('doc', 'annotationtool.qhcp'),
'outfile':
join('cat', 'gui', 'helpbrowser', 'annotationtool.qhc'),
'qcollectiongeneator': 'qcollectiongenerator'}
# python package to distribute
dfiles = build_helpers.get_data_files("./cat")
# no ui files in package data for py2app
uifiles = build_helpers.find_uifiles('./cat')
dfiles.append(uifiles)
setup(app = ['CellAnnotator.py'],
version=version.version,
description=('Interactive Tool for fast and intuitive'
' classifier training'),
author='Rudolf Hoefler',
author_email='*****@*****.**',
packages = build_helpers.find_submodules("./cat", "cat"),
data_files = dfiles,
options = {"py2app": py2app_opts,
"build_help": help_opts,
'qcollectiongeneator': 'qcollectiongenerator'}
ccore = Extension('cecog.ccore._cecog',
sources = [join('csrc','src', 'cecog.cxx')],
libraries = ['vigraimpex', 'boost_python'],
include_dirs = build_helpers.CC_INCLUDES,
extra_object = ['tiff'],
extra_compile_args = ['-O3', '-fPIC'],
language = 'c++')
# python package to distribute
packages = build_helpers.find_submodules("./cecog", "cecog")
scripts = [join('scripts', 'CecogAnalyzer.py')]
dfiles = build_helpers.get_data_files(build_helpers.TARGET_BUNDLE)
# no ui files in package data for py2app
uifiles = build_helpers.find_uifiles('./cecog', build_helpers.TARGET_BUNDLE)
dfiles.append(uifiles)
setup(app = scripts,
data_files = dfiles,
options = {"py2app": py2app_opts,
"build_help": help_opts,
"build_rcc": pyrcc_opts},
cmdclass = {'build_rcc': build_helpers.BuildRcc,
'build_help': build_helpers.BuildHelp,
'build': build_helpers.Build},
packages = packages,
setup_requires=['py2app'],
ext_modules = [ccore],
'qcollectiongeneator': 'qcollectiongenerator'
}
ccore = Extension('cecog.ccore._cecog',
sources=[join('csrc', 'src', 'cecog.cxx')],
libraries=['vigraimpex', 'boost_python'],
include_dirs=build_helpers.CC_INCLUDES,
extra_object=['tiff'],
extra_compile_args=['-O3', '-fPIC'],
language='c++')
# python package to distribute
packages = build_helpers.find_submodules("./cecog", "cecog")
scripts = [join('scripts', 'CecogAnalyzer.py')]
dfiles = build_helpers.get_data_files(build_helpers.TARGET_BUNDLE)
# no ui files in package data for py2app
uifiles = build_helpers.find_uifiles('./cecog', build_helpers.TARGET_BUNDLE)
dfiles.append(uifiles)
setup(app=scripts,
data_files=dfiles,
options={
"py2app": py2app_opts,
"build_help": help_opts,
"build_rcc": pyrcc_opts
},
cmdclass={
'build_rcc': build_helpers.BuildRcc,
'build_help': build_helpers.BuildHelp,
'build': build_helpers.Build
help_opts = {'infile': join('doc', 'manual.qhcp'),
'outfile': join('resources', 'doc', 'manual.qhc'),
'qcollectiongeneator': 'qcollectiongenerator'}
ccore = Extension('cecog.ccore._cecog',
sources = [join('csrc','src', 'cecog.cxx')],
include_dirs=build_helpers.CC_INCLUDES,
libraries=['boost_python', 'tiff', 'vigraimpex'],
extra_compile_args = ['-O3', '-fPIC'],
language = 'c++')
# python packages to distribute
packages = build_helpers.find_submodules("./cecog", "cecog")
scripts = [join('scripts', 'CecogAnalyzer.py'),
join('scripts', 'cecog_batch.py')]
setup(scripts = scripts,
data_files = build_helpers.get_data_files(build_helpers.TARGET_SYS,
mpl_data=False,
qt_plugins=False),
cmdclass = {'build_rcc': build_helpers.BuildRcc,
'build_help': build_helpers.BuildHelp,
'build': build_helpers.Build},
packages = packages,
package_data = {'cecog': [join('gui', '*.ui'),
join('gui', 'helpbrowser', '*.ui')]},
options = {'build_rcc': pyrcc_opts,
'build_help': help_opts},
ext_modules = [ccore],
**build_helpers.metadata)
library_dirs = []
ccore = Extension('cecog.ccore._cecog',
sources = [join('csrc','src', 'cecog.cxx')],
include_dirs = includes,
libraries = libraries,
library_dirs = library_dirs,
extra_compile_args = ["/bigobj", "/EHsc"],
language = 'c++')
# python package to distribute
packages = build_helpers.find_submodules("./cecog", "cecog")
# special casing for system installation or py2exe bundle
if "py2exe" in sys.argv:
dfiles = build_helpers.get_data_files(build_helpers.TARGET_BUNDLE)
else:
build_helpers.metadata['name'] = 'cellcognition'
dfiles = build_helpers.get_data_files(build_helpers.TARGET_SYS,
mpl_data=False)
if "bdist_wininst" in sys.argv:
from distutils.sysconfig import get_python_lib
dllpath = find_library("vigraimpex")
# assuming all dlls in the same directory,
# lib/site-packages is also windows specific
dlls = (join("lib", "site-packages", "cecog", "ccore"),
glob.glob(dllpath.replace("vigraimpex", "*")))
dfiles.append(dlls)
setup(options = {"py2exe": py2exe_opts,
'infile': 'cecog.qrc',
'outfile': join('cecog', 'cecog_rc.py'),
'pyrccbin': 'pyrcc4'
}
ccore = Extension('cecog.ccore._cecog',
sources=[join('csrc', 'src', 'cecog.cxx')],
include_dirs=build_helpers.CC_INCLUDES,
libraries=['boost_python', 'tiff', 'vigraimpex'],
extra_compile_args=['-O3', '-fPIC'],
language='c++')
# python packages to distribute
packages = build_helpers.find_submodules("./cecog", "cecog")
scripts = [
join('scripts', 'CecogAnalyzer.py'),
join('scripts', 'cecog_batch.py')
]
setup(scripts=scripts,
data_files=build_helpers.get_data_files(build_helpers.TARGET_SYS,
mpl_data=False),
cmdclass={
'pyrcc': build_helpers.PyRcc,
'build': build_helpers.Build
},
packages=packages,
options={'pyrcc': pyrcc_opts},
ext_modules=[ccore],
**build_helpers.metadata)
'cecog.gui',
'cecog.gui.analyzer',
'cecog.gui.modules',
'cecog.gui.widgets',
'cecog.io',
'cecog.learning',
'cecog.multiprocess',
'cecog.plugin',
'cecog.plugin.segmentation',
'cecog.threads',
'cecog.traits',
'cecog.traits.analyzer',
'cecog.util',
'pdk']
setup(options = {"py2exe": py2exe_opts,
'pyrcc': pyrcc_opts},
cmdclass = {'pyrcc': build_helpers.PyRcc,
'build': build_helpers.Build},
packages = packages,
package_dir = {'cecog': join('pysrc', 'cecog'),
'pdk': join('pysrc', 'pdk')},
data_files = build_helpers.get_data_files(),
# zipfile = "data.zip",
windows = [{'script': join('scripts', 'CecogAnalyzer.py'),
'icon_resources': [(1, 'resources\cecog_analyzer_icon.ico')]
}],
console = [{'script': join('scripts', 'cecog_batch.py')}],
ext_modules = [ccore],
**build_helpers.metadata)
'cecog.extensions',
'cecog.gui',
'cecog.gui.analyzer',
'cecog.gui.modules',
'cecog.gui.widgets',
'cecog.io',
'cecog.learning',
'cecog.multiprocess',
'cecog.plugin',
'cecog.plugin.segmentation',
'cecog.threads',
'cecog.traits',
'cecog.traits.analyzer',
'cecog.util',
'pdk']
scripts = [join('scripts', 'CecogAnalyzer.py'), join('scripts', 'cecog_batch.py')]
datadir = join(sys.prefix, 'share', 'cellcognition')
setup(scripts = scripts,
data_files = build_helpers.get_data_files(mpl_data=False),
cmdclass = {'pyrcc': build_helpers.PyRcc,
'build': build_helpers.Build},
packages = packages,
package_dir = {'cecog': join('pysrc', 'cecog'),
'pdk': join('pysrc', 'pdk')},
options = {'pyrcc': pyrcc_opts,
'install': {'install_data': datadir}},
ext_modules = [ccore],
**build_helpers.metadata)
'outfile': join('cecog', 'cecog_rc.py'),
'pyrccbin': 'pyrcc4'
}
ccore = Extension('cecog.ccore._cecog',
sources=[join('csrc', 'src', 'cecog.cxx')],
libraries=['vigraimpex', 'boost_python'],
include_dirs=build_helpers.CC_INCLUDES,
extra_object=['tiff'],
extra_compile_args=['-O3', '-fPIC'],
language='c++')
# python package to distribute
packages = build_helpers.find_submodules("./cecog", "cecog")
scripts = [join('scripts', 'CecogAnalyzer.py')]
setup(app=scripts,
data_files=build_helpers.get_data_files(),
options={
"py2app": py2app_opts,
"pyrcc": pyrcc_opts
},
cmdclass={
'pyrcc': build_helpers.PyRcc,
'build': build_helpers.Build
},
packages=packages,
setup_requires=['py2app'],
ext_modules=[ccore],
**build_helpers.metadata)
