def test_schema_only(self):
     generate_schema_from_csv_file(self.file_name, self.db_path, self.table_name, schema_only=1)
 def test_loading_table(self):
     generate_schema_from_csv_file(self.file_name, self.db_path, self.table_name)
__author__ = 'janos'

from bulk_import_data_from_csv_to_db import generate_schema_from_csv_file

import os
samfiles = [
    'CBR_1.txt', 'CBR_2.txt', 'CBR_3.txt', 'CBR_4.txt', 'CBR_5.txt',
    'NOG_1.txt', 'NOG_2.txt'
]
samfiles = ['CBR_1.txt']
for samfile in samfiles:
    file_name = os.path.join("E:\\data\\xlaev transciptome\\", samfile)
    table_name = samfile.split(".")[0]
    generate_schema_from_csv_file(
        file_name,
        "postgresql+pg8000://janos:@192.168.93.132/janos",
        table_name,
        delimiter="\t",
        no_header=True)
Ejemplo n.º 4
0
 def test_schema_only(self):
     generate_schema_from_csv_file(self.file_name,
                                   self.db_path,
                                   self.table_name,
                                   schema_only=1)
Ejemplo n.º 5
0
 def test_loading_table(self):
     generate_schema_from_csv_file(self.file_name, self.db_path,
                                   self.table_name)
__author__ = 'janos'

from bulk_import_data_from_csv_to_db import generate_schema_from_csv_file

import os
samfiles = ['CBR_1.txt','CBR_2.txt','CBR_3.txt','CBR_4.txt','CBR_5.txt','NOG_1.txt','NOG_2.txt']
samfiles = ['CBR_1.txt']
for samfile in samfiles:
    file_name = os.path.join("E:\\data\\xlaev transciptome\\", samfile)
    table_name = samfile.split(".")[0]
    generate_schema_from_csv_file(file_name,
                              "postgresql+pg8000://janos:@192.168.93.132/janos",
                                table_name, delimiter="\t", no_header=True)