def scriptMEME():
screen.clear()
screen.border(0)
screen.addstr(2, 2, "This is MEME")
screen.addstr(4, 4, "Please enter an input file for MEME")
screen.addstr(8, 4, "Please type in path to MEME's bin folder")
screen.addstr(9, 4, "Example: /username/MEME/bin/")
screen.addstr(13, 4, "Please fill in all the parameters for MEME")
screen.addstr(14, 4, "Example: -dna -nmotifs 3 -minw 20 -maxw 50 -mod zoops -minsites 150 -maxsites 745")
screen.refresh()
fourthClass = class4()
userInput = screen.getstr(6, 10, 60)
MEMEpath = screen.getstr(11, 10, 60)
Parameters = screen.getstr(16, 10, 120)
try:
fourthClass.callMEME(userInput, MEMEpath, Parameters)
screen.clear()
screen.border(0)
screen.addstr(2, 4, "MEME succes!")
screen.refresh()
time.sleep(3)
except:
curses.flash()
show_error("Invalid file name. Try again.")
secondClass.zoekOrthologen(userOutput+".txt", userOutput2)
screen.clear()
screen.border(0)
screen.addstr(2, 2, "50% complete...")
screen.refresh()
thirdClass = class3()
userOutput3 = "MS_output_WCFS1_glc1"
userOutput4 = "MS_output_NC8_glc1"
userOutput5 = "MS_output_WCFS1_glc2"
userOutput6 = "MS_output_NC8_glc2"
thirdClass.motifSearch(userOutput2+".txt", userOutput3, userOutput4, userOutput5, userOutput6)
screen.clear()
screen.border(0)
screen.addstr(2, 2, "75% complete...")
screen.refresh()
fourthClass = class4()
Parameters = "-dna -nmotifs 1 -minw 20 -maxw 50 -mod zoops -minsites 150 -maxsites 745"
fourthClass.callMEME(userOutput3+".txt", MEMEpath, Parameters)
fourthClass.callMEME(userOutput4+".txt", MEMEpath, Parameters)
fourthClass.callMEME(userOutput5+".txt", MEMEpath, Parameters)
fourthClass.callMEME(userOutput6+".txt", MEMEpath, Parameters)
screen.clear()
screen.border(0)
screen.addstr(2, 2, "100% complete!")
screen.addstr(4, 4, "Thank you for using the superscript!")
screen.refresh()
time.sleep(3)
except:
curses.flash()
show_error("Invalid file name. Try again.")
