def get_esr_tracker(self, req: CamcopsRequest) -> TrackerInfo:
axis_min = -0.5
axis_max = 10.0
axis_ticks = [
TrackerAxisTick(n, str(n)) for n in range(0,
int(axis_max) + 1)
]
horizontal_lines = [
self.ESR_MODERATE_HIGH_CUTOFF,
self.ESR_LOW_MODERATE_CUTOFF,
self.ESR_REMISSION_LOW_CUTOFF,
0,
]
horizontal_labels = [
TrackerLabel(7.55, self.wxstring(req, "high")),
TrackerLabel(4.15, self.wxstring(req, "moderate")),
TrackerLabel(2.9, self.wxstring(req, "low")),
TrackerLabel(1.3, self.wxstring(req, "remission")),
]
return TrackerInfo(
value=self.das28_esr(),
plot_label="DAS28-ESR",
axis_label="DAS28-ESR",
axis_min=axis_min,
axis_max=axis_max,
axis_ticks=axis_ticks,
horizontal_lines=horizontal_lines,
horizontal_labels=horizontal_labels,
)
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
axis_min = self.MINIMUM - 0.5
axis_max = self.MAXIMUM + 0.5
axis_ticks = [
TrackerAxisTick(n, str(n)) for n in range(0,
int(axis_max) + 1)
]
horizontal_lines = [self.MAXIMUM, self.ACTIVE_CUTOFF, self.MINIMUM]
horizontal_labels = [
TrackerLabel(self.ACTIVE_CUTOFF + 0.5,
self.wxstring(req, "active")),
TrackerLabel(self.ACTIVE_CUTOFF - 0.5,
self.wxstring(req, "inactive")),
]
return [
TrackerInfo(
value=self.basdai(),
plot_label="BASDAI",
axis_label="BASDAI",
axis_min=axis_min,
axis_max=axis_max,
axis_ticks=axis_ticks,
horizontal_lines=horizontal_lines,
horizontal_labels=horizontal_labels,
)
]
def get_crp_tracker(self, req: CamcopsRequest) -> TrackerInfo:
axis_min = -0.5
axis_max = 9.0
axis_ticks = [
TrackerAxisTick(n, str(n)) for n in range(0,
int(axis_max) + 1)
]
horizontal_lines = [
self.CRP_MODERATE_HIGH_CUTOFF,
self.CRP_LOW_MODERATE_CUTOFF,
self.CRP_REMISSION_LOW_CUTOFF,
0,
]
horizontal_labels = [
TrackerLabel(6.8, self.wxstring(req, "high")),
TrackerLabel(3.75, self.wxstring(req, "moderate")),
TrackerLabel(2.65, self.wxstring(req, "low")),
TrackerLabel(1.2, self.wxstring(req, "remission")),
]
return TrackerInfo(
value=self.das28_crp(),
plot_label="DAS28-CRP",
axis_label="DAS28-CRP",
axis_min=axis_min,
axis_max=axis_max,
axis_ticks=axis_ticks,
horizontal_lines=horizontal_lines,
horizontal_labels=horizontal_labels,
)
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="PHQ-9 total score (rating depressive symptoms)",
axis_label="Score for Q1-9 (out of {})".format(
self.MAX_SCORE_MAIN),
axis_min=-0.5,
axis_max=self.MAX_SCORE_MAIN + 0.5,
axis_ticks=[
TrackerAxisTick(27, "27"),
TrackerAxisTick(25, "25"),
TrackerAxisTick(20, "20"),
TrackerAxisTick(15, "15"),
TrackerAxisTick(10, "10"),
TrackerAxisTick(5, "5"),
TrackerAxisTick(0, "0"),
],
horizontal_lines=[19.5, 14.5, 9.5, 4.5],
horizontal_labels=[
TrackerLabel(23, req.wappstring("severe")),
TrackerLabel(17, req.wappstring("moderately_severe")),
TrackerLabel(12, req.wappstring("moderate")),
TrackerLabel(7, req.wappstring("mild")),
TrackerLabel(2.25, req.wappstring("none")),
])
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="PHQ-9 total score (rating depressive symptoms)",
axis_label=f"Score for Q1-9 (out of {self.MAX_SCORE_MAIN})",
axis_min=-0.5,
axis_max=self.MAX_SCORE_MAIN + 0.5,
axis_ticks=[
TrackerAxisTick(27, "27"),
TrackerAxisTick(25, "25"),
TrackerAxisTick(20, "20"),
TrackerAxisTick(15, "15"),
TrackerAxisTick(10, "10"),
TrackerAxisTick(5, "5"),
TrackerAxisTick(0, "0"),
],
horizontal_lines=[19.5, 14.5, 9.5, 4.5],
horizontal_labels=[
TrackerLabel(23, req.sstring(SS.SEVERE)),
TrackerLabel(17, req.sstring(SS.MODERATELY_SEVERE)),
TrackerLabel(12, req.sstring(SS.MODERATE)),
TrackerLabel(7, req.sstring(SS.MILD)),
TrackerLabel(2.25, req.sstring(SS.NONE)),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [TrackerInfo(
value=self.total_score(),
plot_label="GAD-7 total score",
axis_label="Total score (out of 21)",
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[14.5, 9.5, 4.5],
horizontal_labels=[
TrackerLabel(17, req.wappstring("severe")),
TrackerLabel(12, req.wappstring("moderate")),
TrackerLabel(7, req.wappstring("mild")),
TrackerLabel(2.25, req.wappstring("none")),
]
)]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(value=self.total_score(),
plot_label="CIWA total score",
axis_label="Total score (out of {})".format(
self.MAX_SCORE),
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[14.5, 7.5],
horizontal_labels=[
TrackerLabel(17, req.wappstring("severe")),
TrackerLabel(11, req.wappstring("moderate")),
TrackerLabel(3.75, req.wappstring("mild")),
])
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(value=self.total_score(),
plot_label="MOCA total score",
axis_label="Total score (out of {})".format(
self.MAX_SCORE),
axis_min=-0.5,
axis_max=(self.MAX_SCORE + 0.5),
horizontal_lines=[25.5],
horizontal_labels=[
TrackerLabel(26, req.wappstring("normal"),
LabelAlignment.bottom),
TrackerLabel(25, req.wappstring("abnormal"),
LabelAlignment.top),
])
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="HAM-A total score",
axis_label="Total score (out of {})".format(self.MAX_SCORE),
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[30.5, 24.5, 17.5],
horizontal_labels=[
TrackerLabel(33, req.wappstring("very_severe")),
TrackerLabel(27.5, req.wappstring("moderate_to_severe")),
TrackerLabel(21, req.wappstring("mild_to_moderate")),
TrackerLabel(8.75, req.wappstring("mild")),
])
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
line_step = 20
threshold_line = self.DEPRESSION_RISK_THRESHOLD - 0.5
# noinspection PyTypeChecker
return [
TrackerInfo(
value=self.total_score(),
plot_label="CESD total score",
axis_label=f"Total score ({self.MIN_SCORE}-{self.MAX_SCORE})",
axis_min=self.MIN_SCORE - 0.5,
axis_max=self.MAX_SCORE + 0.5,
axis_ticks=regular_tracker_axis_ticks_int(self.MIN_SCORE,
self.MAX_SCORE,
step=line_step),
horizontal_lines=equally_spaced_int(
self.MIN_SCORE + line_step,
self.MAX_SCORE - line_step,
step=line_step,
) + [threshold_line],
horizontal_labels=[
TrackerLabel(
threshold_line,
self.wxstring(req, "depression_or_risk_of"),
)
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [TrackerInfo(
value=self.total_score(),
plot_label="HAM-D total score",
axis_label="Total score (out of {})".format(MAX_SCORE),
axis_min=-0.5,
axis_max=MAX_SCORE + 0.5,
horizontal_lines=[22.5, 19.5, 14.5, 7.5],
horizontal_labels=[
TrackerLabel(25, self.wxstring(req, "severity_verysevere")),
TrackerLabel(21, self.wxstring(req, "severity_severe")),
TrackerLabel(17, self.wxstring(req, "severity_moderate")),
TrackerLabel(11, self.wxstring(req, "severity_mild")),
TrackerLabel(3.75, self.wxstring(req, "severity_none")),
]
)]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="SMAST total score",
axis_label=f"Total score (out of {self.NQUESTIONS})",
axis_min=-0.5,
axis_max=self.NQUESTIONS + 0.5,
horizontal_lines=[2.5, 1.5],
horizontal_labels=[
TrackerLabel(4, self.wxstring(req, "problem_probable")),
TrackerLabel(2, self.wxstring(req, "problem_possible")),
TrackerLabel(0.75, self.wxstring(req, "problem_unlikely")),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="CIWA total score",
axis_label=f"Total score (out of {self.MAX_SCORE})",
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[14.5, 7.5],
horizontal_labels=[
TrackerLabel(17, req.sstring(SS.SEVERE)),
TrackerLabel(11, req.sstring(SS.MODERATE)),
TrackerLabel(3.75, req.sstring(SS.MILD)),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
line_step = 20
preliminary_cutoff = 33
return [
TrackerInfo(
value=self.total_score(),
plot_label="PCL-5 total score",
axis_label=f"Total score ({self.MIN_SCORE}-{self.MAX_SCORE})",
axis_min=self.MIN_SCORE - 0.5,
axis_max=self.MAX_SCORE + 0.5,
axis_ticks=regular_tracker_axis_ticks_int(self.MIN_SCORE,
self.MAX_SCORE,
step=line_step),
horizontal_lines=equally_spaced_int(
self.MIN_SCORE + line_step,
self.MAX_SCORE - line_step,
step=line_step,
) + [preliminary_cutoff],
horizontal_labels=[
TrackerLabel(
preliminary_cutoff,
self.wxstring(req, "preliminary_cutoff"),
)
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="MOCA total score",
axis_label=f"Total score (out of {self.MAX_SCORE})",
axis_min=-0.5,
axis_max=(self.MAX_SCORE + 0.5),
horizontal_lines=[25.5],
horizontal_labels=[
TrackerLabel(26, req.sstring(SS.NORMAL),
LabelAlignment.bottom),
TrackerLabel(25, req.sstring(SS.ABNORMAL),
LabelAlignment.top),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="PHQ-15 total score (rating somatic symptoms)",
axis_label=f"Score for Q1-15 (out of {self.MAX_TOTAL})",
axis_min=-0.5,
axis_max=self.MAX_TOTAL + 0.5,
horizontal_lines=[14.5, 9.5, 4.5],
horizontal_labels=[
TrackerLabel(22, req.sstring(SS.SEVERE)),
TrackerLabel(12, req.sstring(SS.MODERATE)),
TrackerLabel(7, req.sstring(SS.MILD)),
TrackerLabel(2.25, req.sstring(SS.NONE)),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="PHQ-15 total score (rating somatic symptoms)",
axis_label="Score for Q1-15 (out of {})".format(
self.MAX_TOTAL),
axis_min=-0.5,
axis_max=self.MAX_TOTAL + 0.5,
horizontal_lines=[14.5, 9.5, 4.5],
horizontal_labels=[
TrackerLabel(22, req.wappstring("severe")),
TrackerLabel(12, req.wappstring("moderate")),
TrackerLabel(7, req.wappstring("mild")),
TrackerLabel(2.25, req.wappstring("none")),
])
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="GAD-7 total score",
axis_label="Total score (out of 21)",
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[14.5, 9.5, 4.5],
horizontal_labels=[
TrackerLabel(17, req.sstring(SS.SEVERE)),
TrackerLabel(12, req.sstring(SS.MODERATE)),
TrackerLabel(7, req.sstring(SS.MILD)),
TrackerLabel(2.25, req.sstring(SS.NONE)),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="HAM-A total score",
axis_label=f"Total score (out of {self.MAX_SCORE})",
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[30.5, 24.5, 17.5],
horizontal_labels=[
TrackerLabel(33, req.sstring(SS.VERY_SEVERE)),
TrackerLabel(27.5, req.sstring(SS.MODERATE_TO_SEVERE)),
TrackerLabel(21, req.sstring(SS.MILD_TO_MODERATE)),
TrackerLabel(8.75, req.sstring(SS.MILD)),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
axis_min = self.MINIMUM - 0.5
axis_max = self.MAXIMUM + 0.5
axis_ticks = [
TrackerAxisTick(n, str(n)) for n in range(0,
int(axis_max) + 1, 2)
]
horizontal_lines = [
self.MAXIMUM,
self.MODERATE_SEVERITY_MAX,
self.LOW_SEVERITY_MAX,
self.NEAR_REMISSION_MAX,
self.MINIMUM,
]
horizontal_labels = [
TrackerLabel(
self.MODERATE_SEVERITY_MAX + 8.0,
self.wxstring(req, "high_severity"),
),
TrackerLabel(
self.MODERATE_SEVERITY_MAX - 3.0,
self.wxstring(req, "moderate_severity"),
),
TrackerLabel(self.LOW_SEVERITY_MAX - 1.5,
self.wxstring(req, "low_severity")),
TrackerLabel(
self.NEAR_REMISSION_MAX - 1.5,
self.wxstring(req, "near_remission"),
),
]
return [
TrackerInfo(
value=self.rapid3(),
plot_label="RAPID3",
axis_label="RAPID3",
axis_min=axis_min,
axis_max=axis_max,
axis_ticks=axis_ticks,
horizontal_lines=horizontal_lines,
horizontal_labels=horizontal_labels,
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="HAM-D-7 total score",
axis_label=f"Total score (out of {self.MAX_SCORE})",
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[19.5, 11.5, 3.5],
horizontal_labels=[
TrackerLabel(23, self.wxstring(req, "severity_severe")),
TrackerLabel(15.5, self.wxstring(req,
"severity_moderate")),
TrackerLabel(7.5, self.wxstring(req, "severity_mild")),
TrackerLabel(1.75, self.wxstring(req, "severity_none")),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
axis_min = -0.5
axis_max = 7.5
axis_ticks = [
TrackerAxisTick(n, str(n)) for n in range(0, int(axis_max) + 1)
]
horizontal_lines = [
self.HIGH_VERY_HIGH_CUTOFF,
self.MODERATE_HIGH_CUTOFF,
self.INACTIVE_MODERATE_CUTOFF,
0,
]
horizontal_labels = [
TrackerLabel(5.25, self.wxstring(req, "very_high")),
TrackerLabel(2.8, self.wxstring(req, "high")),
TrackerLabel(1.7, self.wxstring(req, "moderate")),
TrackerLabel(0.65, self.wxstring(req, "inactive")),
]
return [
TrackerInfo(
value=self.asdas_crp(),
plot_label="ASDAS-CRP",
axis_label="ASDAS-CRP",
axis_min=axis_min,
axis_max=axis_max,
axis_ticks=axis_ticks,
horizontal_lines=horizontal_lines,
horizontal_labels=horizontal_labels,
),
TrackerInfo(
value=self.asdas_esr(),
plot_label="ASDAS-ESR",
axis_label="ASDAS-ESR",
axis_min=axis_min,
axis_max=axis_max,
axis_ticks=axis_ticks,
horizontal_lines=horizontal_lines,
horizontal_labels=horizontal_labels,
),
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(
value=self.total_score(),
plot_label="EPDS total score (rating depressive symptoms)",
axis_label=f"Total score (out of {self.MAX_TOTAL})",
axis_min=-0.5,
axis_max=self.MAX_TOTAL + 0.5,
horizontal_lines=[
self.CUTOFF_2_GREATER_OR_EQUAL - 0.5,
self.CUTOFF_1_GREATER_OR_EQUAL - 0.5,
],
horizontal_labels=[
TrackerLabel(self.CUTOFF_2_GREATER_OR_EQUAL,
"likely depression"),
TrackerLabel(self.CUTOFF_1_GREATER_OR_EQUAL,
"possible depression"),
],
)
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
return [
TrackerInfo(value=self.total_score(),
plot_label="MAST total score",
axis_label="Total score (out of {})".format(
self.MAX_SCORE),
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=[self.ROSS_THRESHOLD - 0.5],
horizontal_labels=[
TrackerLabel(self.ROSS_THRESHOLD, "Ross threshold",
LabelAlignment.bottom)
])
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
if self.highschooleducation == 1:
hlines = [26.5, 20.5]
y_upper = 28.25
y_middle = 23.5
else:
hlines = [24.5, 19.5]
y_upper = 27.25
y_middle = 22
return [
TrackerInfo(
value=self.total_score(),
plot_label="SLUMS total score",
axis_label="Total score (out of {})".format(self.MAX_SCORE),
axis_min=-0.5,
axis_max=self.MAX_SCORE + 0.5,
horizontal_lines=hlines,
horizontal_labels=[
TrackerLabel(y_upper, req.wappstring("normal")),
TrackerLabel(y_middle, self.wxstring(req, "category_mci")),
TrackerLabel(17, self.wxstring(req, "category_dementia")),
])
]
def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]:
# $ signs enable TEX mode for matplotlib, e.g. "$BMI (kg/m^2)$"
return [
TrackerInfo(
value=self.bmi(),
plot_label="Body mass index",
axis_label="BMI (kg/m^2)",
axis_min=10,
axis_max=42,
horizontal_lines=[13, 15, 16, 17, 17.5, 18.5, 25, 30, 35, 40],
horizontal_labels=[
# positioned near the mid-range for some:
TrackerLabel(
12.5,
self.wxstring(req, "underweight_under_13"),
LabelAlignment.top,
),
TrackerLabel(14, self.wxstring(req, "underweight_13_15")),
TrackerLabel(
15.5, self.wxstring(req, "underweight_15_16")
),
TrackerLabel(
16.5, self.wxstring(req, "underweight_16_17")
),
TrackerLabel(
17.25, self.wxstring(req, "underweight_17_17.5")
),
TrackerLabel(
18, self.wxstring(req, "underweight_17.5_18.5")
),
TrackerLabel(21.75, self.wxstring(req, "normal")),
TrackerLabel(27.5, self.wxstring(req, "overweight")),
TrackerLabel(32.5, self.wxstring(req, "obese_1")),
TrackerLabel(37.6, self.wxstring(req, "obese_2")),
TrackerLabel(
40.5,
self.wxstring(req, "obese_3"),
LabelAlignment.bottom,
),
],
aspect_ratio=1.0,
),
TrackerInfo(
value=self.mass_kg,
plot_label="Mass (kg)",
axis_label="Mass (kg)",
),
TrackerInfo(
value=self.waist_cm,
plot_label="Waist circumference (cm)",
axis_label="Waist circumference (cm)",
),
]