def testInvalidOntologyInput15(self):
"""
This is an invali input, as the Duo Term number is missing
"""
sample = {"duo": [{"id": "DUO:"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput2(self):
"""
This is an invalid input, as 'Duo' key should be lower case.
"""
sample = {"Duo": [{"id": "DUO:0000018"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput14(self):
"""
This is an invalid input, as there the list of Duo Terms is empty
"""
sample = {"duo": []}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput6(self):
"""
This is an invalid input, as there is no 'modifier' for DUO:0000024
"""
sample = {"duo": [{"id": "DUO:0000024"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput10(self):
"""
This is an invalid input, as the DUO term in totally invalid
"""
sample = {"duo": [{"id": "DUO:0000089"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput1(self):
"""
This is an invalid input, as id DUO:0000002 is not supported.
"""
sample = {"duo": [{"id": "DUO:0000002"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput5(self):
"""
This is an invalid input, as there is no DUO Term under 'id'
"""
sample = {"duo": [{"id": ""}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput16(self):
"""
This is an invalid input, as 'modifier' is supplied with
Duo Term that does not require it
"""
sample = {"duo": [{"id": "DUO:0000018", "modifier": "2022-01-01"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput13(self):
"""
This in an invalid input, as there is only the integer part of the
Duo Term under 'id'
"""
sample = {"duo": [{"id": "18"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput11(self):
"""
This in an invalid input, as the DUO word in
'id: DUO:0000018' is not uppercase
"""
sample = {"duo": [{"id": "DUo:0000018"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput9(self):
"""
This is an invalid input, as 'Modifier' key word
should be lower case
"""
sample = {"duo": [{"id": "DUO:0000024", "Modifier": "2022-01-01"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput8(self):
"""
This is an invalid input, as 'DUO:0000024' modifier has an
invalid date
"""
sample = {"duo": [{"id": "DUO:0000024", "modifier": "2022-20-20"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput7(self):
"""
This is an invalid input, as date for 'DUO:0000024' does not follow
format YYYY-MM-DD
"""
sample = {"duo": [{"id": "DUO:0000024", "modifier": "01-01-2022"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput12(self):
"""
This is an invalid imput, as the DUO Term does not follow
correct format
"""
sample = {"duo": [{"id": "DUO:0018"}]}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testInvalidOntologyInput4(self):
"""
This is an invalid input, as 'id' key is missing
"""
sample = {
"duo": [{
"": "DUO:0000018"
}, {
"id": "DUO:0000024",
"modifier": "2022-01-01"
}]
}
parser = OntologyValidator(sample)
self.assertFalse(parser.validate_duo())
def testValidOntologyInput1(self):
"""
This is a valid input, as a correctly-formatted date is provided
for DUO:0000024
"""
sample = {
"duo": [{
"id": "DUO:0000018"
}, {
"id": "DUO:0000024",
"modifier": "2022-01-01"
}]
}
parser = OntologyValidator(sample)
self.assertTrue(parser.validate_duo())
def testValidOntologyInput2(self):
"""
This unit test loops through every valid Duo Term except
'DUO:0000024', which is covered in testValidOntologyInput1
"""
listOfValidDuoIds = [
"DUO:0000001", "DUO:0000004", "DUO:0000005", "DUO:0000006",
"DUO:0000007", "DUO:0000011", "DUO:0000012", "DUO:0000014",
"DUO:0000015", "DUO:0000016", "DUO:0000017", "DUO:0000018",
"DUO:0000019", "DUO:0000020", "DUO:0000021", "DUO:0000026",
"DUO:0000027", "DUO:0000028", "DUO:0000029", "DUO:0000042"
]
for term in listOfValidDuoIds:
sample = {"duo": [{"id": term}]}
parser = OntologyValidator(sample)
self.assertTrue(parser.validate_duo())
