def trace_model_from_checkpoint(logdir, method_name):
config_path = logdir / "configs/_config.json"
checkpoint_path = logdir / "checkpoints/best.pth"
print("Load config")
config: Dict[str, dict] = safitty.load(config_path)
# Get expdir name
config_expdir = Path(config["args"]["expdir"])
# We will use copy of expdir from logs for reproducibility
expdir_from_logs = Path(logdir) / "code" / config_expdir.name
print("Import experiment and runner from logdir")
ExperimentType, RunnerType = \
import_experiment_and_runner(expdir_from_logs)
experiment: Experiment = ExperimentType(config)
print("Load model state from checkpoints/best.pth")
model = experiment.get_model(next(iter(experiment.stages)))
checkpoint = UtilsFactory.load_checkpoint(checkpoint_path)
UtilsFactory.unpack_checkpoint(checkpoint, model=model)
print("Tracing")
traced = trace_model(model, experiment, RunnerType, method_name)
print("Done")
return traced
def _preprocess_model_for_stage(self, stage: str, model: _Model):
stage_index = self.stages.index(stage)
if stage_index > 0:
checkpoint_path = \
f"{self.logdir}/checkpoints/best.pth"
checkpoint = UtilsFactory.load_checkpoint(checkpoint_path)
UtilsFactory.unpack_checkpoint(checkpoint, model=model)
return model
def load_checkpoint(*, filename, state):
if os.path.isfile(filename):
print("=> loading checkpoint \"{}\"".format(filename))
checkpoint = UtilsFactory.load_checkpoint(filename)
state.epoch = checkpoint["epoch"]
UtilsFactory.unpack_checkpoint(checkpoint,
model=state.model,
criterion=state.criterion,
optimizer=state.optimizer,
scheduler=state.scheduler)
print("loaded checkpoint \"{}\" (epoch {})".format(
filename, checkpoint["epoch"]))
else:
raise Exception("no checkpoint found at \"{}\"".format(filename))
def _get_optimizer(self, *, model_params, **params):
key_value_flag = params.pop("_key_value", False)
if key_value_flag:
optimizer = {}
for key, params_ in params.items():
optimizer[key] = self._get_optimizer(model_params=model_params,
**params_)
else:
load_from_previous_stage = \
params.pop("load_from_previous_stage", False)
optimizer = OPTIMIZERS.get_from_params(**params,
params=model_params)
if load_from_previous_stage:
checkpoint_path = \
f"{self.logdir}/checkpoints/best.pth"
checkpoint = UtilsFactory.load_checkpoint(checkpoint_path)
UtilsFactory.unpack_checkpoint(checkpoint, optimizer=optimizer)
for key, value in params.items():
for pg in optimizer.param_groups:
pg[key] = value
return optimizer
def main():
parser = argparse.ArgumentParser()
parser.add_argument('-m', '--model', type=str, default='unet', help='')
parser.add_argument('-dd',
'--data-dir',
type=str,
default=None,
required=True,
help='Data dir')
parser.add_argument(
'-c',
'--checkpoint',
type=str,
default=None,
required=True,
help='Checkpoint filename to use as initial model weights')
parser.add_argument('-b',
'--batch-size',
type=int,
default=16,
help='Batch size for inference')
parser.add_argument('-tta',
'--tta',
default=None,
type=str,
help='Type of TTA to use [fliplr, d4]')
args = parser.parse_args()
data_dir = args.data_dir
checkpoint_file = auto_file(args.checkpoint)
run_dir = os.path.dirname(os.path.dirname(checkpoint_file))
out_dir = os.path.join(run_dir, 'evaluation')
os.makedirs(out_dir, exist_ok=True)
model = get_model(args.model)
checkpoint = UtilsFactory.load_checkpoint(checkpoint_file)
checkpoint_epoch = checkpoint['epoch']
print('Loaded model weights from', args.checkpoint)
print('Epoch :', checkpoint_epoch)
print('Metrics (Train):', 'IoU:',
checkpoint['epoch_metrics']['train']['jaccard'], 'Acc:',
checkpoint['epoch_metrics']['train']['accuracy'])
print('Metrics (Valid):', 'IoU:',
checkpoint['epoch_metrics']['valid']['jaccard'], 'Acc:',
checkpoint['epoch_metrics']['valid']['accuracy'])
UtilsFactory.unpack_checkpoint(checkpoint, model=model)
model = model.cuda().eval()
train_images = find_in_dir(os.path.join(data_dir, 'train', 'images'))
for fname in tqdm(train_images, total=len(train_images)):
image = read_rgb_image(fname)
mask = predict(model,
image,
tta=args.tta,
image_size=(512, 512),
batch_size=args.batch_size,
activation='sigmoid')
mask = (mask * 255).astype(np.uint8)
name = os.path.join(out_dir, os.path.basename(fname))
cv2.imwrite(name, mask)
def main():
parser = argparse.ArgumentParser()
parser.add_argument("-m", "--model", type=str, default="unet", help="")
parser.add_argument("-dd",
"--data-dir",
type=str,
default=None,
required=True,
help="Data dir")
parser.add_argument(
"-c",
"--checkpoint",
type=str,
default=None,
required=True,
help="Checkpoint filename to use as initial model weights",
)
parser.add_argument("-b",
"--batch-size",
type=int,
default=16,
help="Batch size for inference")
parser.add_argument("-tta",
"--tta",
default=None,
type=str,
help="Type of TTA to use [fliplr, d4]")
args = parser.parse_args()
data_dir = args.data_dir
checkpoint_file = auto_file(args.checkpoint)
run_dir = os.path.dirname(os.path.dirname(checkpoint_file))
out_dir = os.path.join(run_dir, "evaluation")
os.makedirs(out_dir, exist_ok=True)
model = get_model(args.model)
checkpoint = UtilsFactory.load_checkpoint(checkpoint_file)
checkpoint_epoch = checkpoint["epoch"]
print("Loaded model weights from", args.checkpoint)
print("Epoch :", checkpoint_epoch)
print(
"Metrics (Train):",
"IoU:",
checkpoint["epoch_metrics"]["train"]["jaccard"],
"Acc:",
checkpoint["epoch_metrics"]["train"]["accuracy"],
)
print(
"Metrics (Valid):",
"IoU:",
checkpoint["epoch_metrics"]["valid"]["jaccard"],
"Acc:",
checkpoint["epoch_metrics"]["valid"]["accuracy"],
)
UtilsFactory.unpack_checkpoint(checkpoint, model=model)
model = model.cuda().eval()
train_images = find_in_dir(os.path.join(data_dir, "train", "images"))
for fname in tqdm(train_images, total=len(train_images)):
image = read_inria_rgb(fname)
mask = predict(model,
image,
tta=args.tta,
image_size=(512, 512),
batch_size=args.batch_size,
activation="sigmoid")
mask = (mask * 255).astype(np.uint8)
name = os.path.join(out_dir, os.path.basename(fname))
cv2.imwrite(name, mask)
