Ejemplos de hemo_2cam en Python

Ejemplo n.º 1

# -*- coding: utf-8 -*-
"""
Created on Thu May 25 12:21:57 2017

@author: mattv
"""

from cats_mapping.hemodynamics.hemo_2cam import hemo_2cam


# 170524_M291236
hemo = hemo_2cam(r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_cam1_calibJCamF100.dcimg_4_4_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_cam2_calibJCamF102.dcimg_4_4_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_cam1_calibJCamF100.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_cam2_calibJCamF102.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_cam1JCamF100.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_cam2JCamF103.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_cam1JPhys100",
                 r"Y:\CorticalMapping\IntrinsicImageData\170608-M291236\170608-M291236_alldat_test")

hemo.run_2cam()

Ejemplo n.º 2

Archivo: M287480_170518.py Proyecto: mtv2101/cats_mapping

# -*- coding: utf-8 -*-
"""
Created on Thu May 25 12:21:57 2017

@author: mattv
"""

from cats_mapping.hemodynamics.hemo_2cam import hemo_2cam

# 170524_M291236
hemo = hemo_2cam(
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M287480\M287480_170531_cam1_crosstalkJCamF101.dcimg_4_4_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M287480\M287480_170531_cam2_crosstalkJCamF108.dcimg_4_4_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M287480\M287480_170531_cam1_crosstalkJCamF101.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M287480\M287480_170531_cam2_crosstalkJCamF108.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M287480\M287480_170531_cam1JCamF103.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M287480\M287480_170531_cam2JCamF109.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M287480\M287480_170531_cam1JPhys103",
    r"G:\170531-M287480\170531_M287480_alldat")

hemo.run_2cam()

Ejemplo n.º 3

Archivo: 170714-M318710.py Proyecto: mtv2101/cats_mapping

# -*- coding: utf-8 -*-
"""
Created on Fri Jul 14 14:59:03 2017

@author: mattv
"""

from cats_mapping.hemodynamics.hemo_2cam import hemo_2cam


# 170524_M291236
hemo = hemo_2cam(r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\470nm_cam1_demixtestJCamF118.dcimg_4_4_1.h5",
                 r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\470nm_cam2_demixtestJCamF116.dcimg_4_4_1.h5",
                 r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\470nm_cam1_demixtestJCamF118.dcimg_16_16_1.h5",
                 r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\470nm_cam2_demixtestJCamF116.dcimg_16_16_1.h5",
                 r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\170714-M318710_cam1JCamF101.dcimg_16_16_1.h5",
                 r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\170714-M318710_cam2JCamF118.dcimg_16_16_1.h5",
                 r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\170714-M318710_cam1JPhys101",
                 r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\170714-M318710\170714-M318710_alldat")

hemo.run_2cam()

Ejemplo n.º 4

# -*- coding: utf-8 -*-
"""
Created on Fri Jul 14 14:59:03 2017

@author: mattv
"""

from cats_mapping.hemodynamics.hemo_2cam import hemo_2cam


# 170524_M291236
hemo = hemo_2cam(r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_cam1_crosstalkJCamF100.dcimg_4_4_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_cam2_crosstalkJCamF120.dcimg_4_4_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_cam1_crosstalkJCamF100.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_cam2_crosstalkJCamF120.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_cam1JCamF102.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_cam2JCamF119.dcimg_16_16_1.h5",
                 r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_cam1JPhys102",
                 r"Y:\CorticalMapping\IntrinsicImageData\170717-M296292\170717-M296292_alldat")

hemo.run_2cam()

Ejemplo n.º 5

Archivo: 170707_xtalk_test.py Proyecto: mtv2101/cats_mapping

# -*- coding: utf-8 -*-
"""
Created on Thu May 25 12:21:57 2017

@author: mattv
"""

from cats_mapping.hemodynamics.hemo_2cam import hemo_2cam

# 170524_M291236
hemo = hemo_2cam(
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_testJcam1.dcimg_4_4_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_cam2_4_4_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_cam1.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_cam2_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_cam1.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_cam2_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_cam1_JPhys100",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_cam1_JPhys100",
    r"Y:\CorticalMapping\IntrinsicImageData\170707_xtalk_test\170707_xtalk_test_alldat"
)

hemo.run_2cam()

Ejemplo n.º 6

#file_list = [[r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_cam1_calibJCamF100.dcimg_4_4_1.h5",
#              r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_cam2-calibJCamF100.dcimg_4_4_1.h5",
#              r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_cam1_calibJCamF100.dcimg_16_16_1.h5",
#              r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_cam2-calibJCamF100.dcimg_16_16_1.h5",
#              r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_cam1JCamF100.dcimg_16_16_1.h5",
#              r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_cam2JCamF101.dcimg_16_16_1.h5",
#              r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_cam1JPhys100",
#              r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171018-M287480\171018-M287480_alldat"]]

#file_list = [[r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_cam1_calibJCamF102.dcimg_4_4_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_cam2_calibJCamF103.dcimg_4_4_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_cam1_calibJCamF102.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_cam2_calibJCamF103.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_cam1JCamF101.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_cam2JCamF104.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_cam1JPhys101",
#              r"Y:\CorticalMapping\IntrinsicImageData\171025-M334732\171025-M334732_alldat"]]

#file_list = [[r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_cam1_calibJCamF100.dcimg_4_4_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_cam2_calibJCamF105.dcimg_4_4_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_cam1_calibJCamF100.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_cam2_calibJCamF105.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_cam1JCamF100.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_cam2JCamF106.dcimg_16_16_1.h5",
#              r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_cam1JPhys100",
#              r"Y:\CorticalMapping\IntrinsicImageData\171027-M334736\171027-M334736_alldat"]]


for files in file_list:
    hemo = hemo_2cam(files[0], files[1], files[2], files[3], files[4], files[5], files[6], files[7], percentage=65.0)
    hemo.run_2cam()

Ejemplo n.º 7

Archivo: M291236_170524.py Proyecto: mtv2101/cats_mapping

# -*- coding: utf-8 -*-
"""
Created on Thu May 25 12:21:57 2017

@author: mattv
"""

from cats_mapping.hemodynamics.hemo_2cam import hemo_2cam

# 170524_M291236
hemo = hemo_2cam(
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\M291236_170531_cam1_crosstalkJCamF100.dcimg_4_4_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\M291236_170531_cam2_crosstalkJCamF106.dcimg_4_4_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\M291236_170531_cam1_crosstalkJCamF100.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\M291236_170531_cam2_crosstalkJCamF106.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\M291236_170531_cam1JCamF102.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\M291236_170531_cam2_JCamF107.dcimg_16_16_1.h5",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\M291236_170531_cam1JPhys102",
    r"Y:\CorticalMapping\IntrinsicImageData\170531-M291236\170531_M291236_alldat_test"
)

hemo.run_2cam()

Ejemplo n.º 8

Archivo: M295771_170524.py Proyecto: mtv2101/cats_mapping

# -*- coding: utf-8 -*-
"""
Created on Thu May 25 12:21:57 2017

@author: mattv
"""

from cats_mapping.hemodynamics.hemo_2cam import hemo_2cam

# 170524_M291236
hemo = hemo_2cam(
    r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle\171009-M287480-cam1-calibJCamF100.dcimg_4_4_1.h5"
    r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle\171009-M287480-cam2-calibJCamF100.dcimg_4_4_1.h5",
    "\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle\171009-M287480-cam1JCamF101.dcimg_16_16_1.h5",
    "\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle\171009-M287480-cam2JCamF102.dcimg_16_16_1.h5",
    r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle\171009-M287480-cam1JCamF101.dcimg_16_16_1.h5",
    r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle\171009-M287480-cam2JCamF102.dcimg_16_16_1.h5",
    r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle\171009-M287480-cam1JPhys101",
    r"\\allen\programs\braintv\workgroups\nc-ophys\CorticalMapping\IntrinsicImageData\171009-M287480-DriftingGratingCircle"
)

hemo.run_2cam()