def alterrank(arglist): if len(arglist) < 4: print 'change rank' print 'Usage: python cell.py rr oldrank newrank' print 'example: python cell.py rr 10 10.1' return entmgr(cm.entrydb).alterrank(arglist)
def altercontent(arglist):
if len(arglist) < 4:
print 'alter entry content by text reference number'
print 'Usage: python cell.py ac rank target operation'
print 'example'
print 'python cell.py ac 10 3{+"insert newline",="replace line",-}'
print '$ rc ac - ="kck"'
return
entmgr(cm.entrydb).altercontent(arglist)
def rm(arglist): """ rm entry(ies) """ if len(arglist) < 3: print 'rm entry(ies)' print 'Usage: python cell.py rm rank "query string" ...' print 'example: rc rm . tag=alter # remove all the entries tag contains alter' return entmgr(cm.entrydb).rm(arglist)
def alter(arglist):
if len(arglist) < 4:
print 'alter entry'
print 'Usage: python cell.py alter rank {"query string" ...} "update value" ...'
print 'example:'
print 'python cell.py alter . stage:data'
print 'python cell.py alter 2:5 stage=dvlp stage:dvlp-1'
print 'python cell.py alter 2: tag=test stage=dvlp project:dvlp-1'
return
entmgr(cm.entrydb).alter(arglist)
def add(arglist):
"""
Add an entry
"""
if len(arglist) < 4:
print 'add en entry:'
print 'Usage: python cell.py add ent.name content {tag=t1,t2,t3} {ext1=e1 ext2=e2}'
print 'example: python cell.py add .pdb "protein structure file" tag=file,raw stage="data-collection" time="201705160615"'
return
entmgr(cm.entrydb).add(arglist)
print 'entry added in %s' % cm.entrydb
def info(arglist): if len(arglist) < 3: print 'show entry info' print 'Usage: python cell.py info rank "query string" ...' print 'example:\npython cell.py info .' print 'python cell.py info . stage=dvlp' print 'python cell.py info 5:' print 'python cell.py info :5 tag=test,debug stage=dvlp' print 'python cell.py info 2:5 tag=debug stage=test' print 'python cell.py info -' return em = entmgr(cm.entrydb) sortlist = em.info(arglist) cm.fmtout(sortlist) print 'list %d records.' % len(sortlist)
def init(arglist):
if len(arglist) < 3:
print 'Initializ cell meta db.'
print 'Usage: cell init cellname description\n'
return
if not os.path.exists(cm.entrydb):
cellname = arglist[2]
description = arglist[3]
addcmd = ['', '', cellname, description, 'tag=init']
db = TinyDB(cm.entrydb) # create file
em = entmgr(cm.entrydb)
em.add(addcmd)
print 'cell [%s] init done.' % cellname
else:
print 'cannot create cell meta: File (%s) exists' % cm.entrydb
'''