def redraw(self, event=None):
if self.ignore_redraw:
return
for vw_row in self.image_rows + self.object_rows + self.mask_rows:
vw_row.update()
if not self.frame.figure.canvas.IsShown():
self.frame.figure.canvas.Show()
self.layout()
#
# Remove all the old text labels
#
to_remove = []
for artist in list(self.axes.texts):
artist.remove()
m = self.workspace.measurements
assert isinstance(m, cellprofiler.measurement.Measurements)
title_lines = []
object_values = {}
for measurement_row in self.measurement_rows:
assert isinstance(measurement_row, MeasurementRow)
if not measurement_row.should_show():
continue
object_name = measurement_row.get_object_name()
if object_name is None or object_name not in m.get_object_names():
continue
feature = measurement_row.get_measurement_name()
if feature is None or not m.has_feature(object_name, feature):
continue
value = m[object_name, feature]
if object_name in (cellprofiler.measurement.IMAGE,
cellprofiler.measurement.EXPERIMENT):
if isinstance(value, int):
fmt = "%s: %d"
elif isinstance(value, float):
fmt = "%s: %.4f"
else:
fmt = "%s: %s"
title_lines.append(fmt % (feature, value))
else:
if object_name not in object_values:
if any([
not m.has_feature(object_name, lf) for lf in
cellprofiler.measurement.M_LOCATION_CENTER_X,
cellprofiler.measurement.M_LOCATION_CENTER_Y
]):
continue
object_values[object_name] = []
object_values[object_name].append((value, measurement_row))
def redraw(self, event=None):
if self.ignore_redraw:
return
for vw_row in self.image_rows + self.object_rows + self.mask_rows:
vw_row.update()
if not self.frame.figure.canvas.IsShown():
self.frame.figure.canvas.Show()
self.layout()
#
# Remove all the old text labels
#
to_remove = []
for artist in list(self.axes.texts):
artist.remove()
m = self.workspace.measurements
assert isinstance(m, cellprofiler.measurement.Measurements)
title_lines = []
object_values = {}
for measurement_row in self.measurement_rows:
assert isinstance(measurement_row, MeasurementRow)
if not measurement_row.should_show():
continue
object_name = measurement_row.get_object_name()
if object_name is None or object_name not in m.get_object_names():
continue
feature = measurement_row.get_measurement_name()
if feature is None or not m.has_feature(object_name, feature):
continue
value = m[object_name, feature]
if object_name in (cellprofiler.measurement.IMAGE, cellprofiler.measurement.EXPERIMENT):
if isinstance(value, int):
fmt = "%s: %d"
elif isinstance(value, float):
fmt = "%s: %.4f"
else:
fmt = "%s: %s"
title_lines.append(fmt % (feature, value))
else:
if object_name not in object_values:
if any([not m.has_feature(object_name, lf) for lf in
cellprofiler.measurement.M_LOCATION_CENTER_X, cellprofiler.measurement.M_LOCATION_CENTER_Y]):
continue
object_values[object_name] = []
def redraw(self, event=None):
if self.ignore_redraw:
return
for vw_row in self.image_rows + self.object_rows + self.mask_rows:
vw_row.update()
if not self.frame.figure.canvas.IsShown():
self.frame.figure.canvas.Show()
self.layout()
#
# Remove all the old text labels
#
to_remove = []
for artist in list(self.axes.texts):
artist.remove()
m = self.workspace.measurements
assert isinstance(m, cellprofiler.measurement.Measurements)
title_lines = []
object_values = {}
for measurement_row in self.measurement_rows:
assert isinstance(measurement_row, MeasurementRow)
if not measurement_row.should_show():
continue
object_name = measurement_row.get_object_name()
if object_name is None or object_name not in m.get_object_names():
continue
feature = measurement_row.get_measurement_name()
if feature is None or not m.has_feature(object_name, feature):
continue
value = m[object_name, feature]
if object_name in (
cellprofiler.measurement.IMAGE,
cellprofiler.measurement.EXPERIMENT,
):
if isinstance(value, int):
fmt = "%s: %d"
elif isinstance(value, float):
fmt = "%s: %.4f"
else:
fmt = "%s: %s"
title_lines.append(fmt % (feature, value))
else:
if object_name not in object_values:
if any([
not m.has_feature(object_name, lf) for lf in (
cellprofiler.measurement.M_LOCATION_CENTER_X,
cellprofiler.measurement.M_LOCATION_CENTER_Y,
)
]):
continue
object_values[object_name] = []
object_values[object_name].append((value, measurement_row))
if len(title_lines) > 0:
self.axes.set_title("\n".join(title_lines))
else:
self.axes.set_title("Image set # %d" % m.image_number)
for object_name, value_rows in object_values.items():
values = [vr[0] for vr in value_rows]
measurement_rows = [vr[1] for vr in value_rows]
x, y = [
m[object_name, ftr] for ftr in (
cellprofiler.measurement.M_LOCATION_CENTER_X,
cellprofiler.measurement.M_LOCATION_CENTER_Y,
)
]
for i in range(len(x)):
xi, yi = x[i], y[i]
if numpy.isnan(xi) or numpy.isnan(yi):
continue
height = 0
for j, measurement_row in enumerate(measurement_rows):
if len(values[j]) <= i or numpy.isnan(values[j][i]):
continue
value = values[j][i]
font = measurement_row.font
if font.GetStyle() == wx.ITALIC:
fontstyle = "italic"
else:
fontstyle = "normal"
color = measurement_row.foreground_color
fontcolor, backgroundcolor = [
tuple([float(c) / 255 for c in color][:3])
for color in (
measurement_row.foreground_color,
measurement_row.background_color,
)
]
fmt = "%%.%df" % measurement_row.precision
a = self.axes.annotate(
fmt % value,
(xi, yi),
xytext=(0, -height),
textcoords="offset points",
ha="center",
va="center",
bbox={
"boxstyle": measurement_row.box_style,
"fc": backgroundcolor,
"alpha": measurement_row.background_alpha,
},
color=fontcolor,
family=font.GetFaceName(),
fontsize=font.GetPointSize(),
fontstyle=fontstyle,
weight=font.GetWeight(),
)
height += font.GetPointSize() + 1
self.scale_axes()
self.frame.figure.canvas.draw()
def redraw(self, event=None):
if self.ignore_redraw:
return
for vw_row in self.image_rows + self.object_rows + self.mask_rows:
vw_row.update()
if not self.frame.figure.canvas.IsShown():
self.frame.figure.canvas.Show()
self.layout()
#
# Remove all the old text labels
#
to_remove = []
for artist in list(self.axes.texts):
artist.remove()
m = self.workspace.measurements
assert isinstance(m, cellprofiler.measurement.Measurements)
title_lines = []
object_values = {}
for measurement_row in self.measurement_rows:
assert isinstance(measurement_row, MeasurementRow)
if not measurement_row.should_show():
continue
object_name = measurement_row.get_object_name()
if object_name is None or object_name not in m.get_object_names():
continue
feature = measurement_row.get_measurement_name()
if feature is None or not m.has_feature(object_name, feature):
continue
value = m[object_name, feature]
if object_name in (cellprofiler.measurement.IMAGE, cellprofiler.measurement.EXPERIMENT):
if isinstance(value, int):
fmt = "%s: %d"
elif isinstance(value, float):
fmt = "%s: %.4f"
else:
fmt = "%s: %s"
title_lines.append(fmt % (feature, value))
else:
if object_name not in object_values:
if any([not m.has_feature(object_name, lf) for lf in
(cellprofiler.measurement.M_LOCATION_CENTER_X,
cellprofiler.measurement.M_LOCATION_CENTER_Y)]):
continue
object_values[object_name] = []
object_values[object_name].append(
(value, measurement_row))
if len(title_lines) > 0:
self.axes.set_title("\n".join(title_lines))
else:
self.axes.set_title("Image set # %d" % m.image_number)
for object_name, value_rows in object_values.items():
values = [vr[0] for vr in value_rows]
measurement_rows = [vr[1] for vr in value_rows]
x, y = [m[object_name, ftr] for ftr in
(cellprofiler.measurement.M_LOCATION_CENTER_X, cellprofiler.measurement.M_LOCATION_CENTER_Y)]
for i in range(len(x)):
xi, yi = x[i], y[i]
if numpy.isnan(xi) or numpy.isnan(yi):
continue
height = 0
for j, measurement_row in enumerate(measurement_rows):
if len(values[j]) <= i or numpy.isnan(values[j][i]):
continue
value = values[j][i]
font = measurement_row.font
if font.GetStyle() == wx.ITALIC:
fontstyle = "italic"
else:
fontstyle = "normal"
color = measurement_row.foreground_color
fontcolor, backgroundcolor = [
tuple([float(c) / 255 for c in color][:3]) for color in
(measurement_row.foreground_color,
measurement_row.background_color)]
fmt = "%%.%df" % measurement_row.precision
a = self.axes.annotate(
fmt % value,
(xi, yi),
xytext=(0, -height),
textcoords="offset points",
ha="center",
va="center",
bbox={
"boxstyle": measurement_row.box_style,
"fc": backgroundcolor,
"alpha": measurement_row.background_alpha
},
color=fontcolor,
family=font.GetFaceName(),
fontsize=font.GetPointSize(),
fontstyle=fontstyle,
weight=font.GetWeight())
height += font.GetPointSize() + 1
self.scale_axes()
self.frame.figure.canvas.draw()