def __init__(self, *args, **kwargs):
super(self.__class__, self).__init__(*args, **kwargs)
self.server = get_omero_server() or ""
self.port = get_omero_port()
self.user = get_omero_user() or ""
self.session_id = None
self.SetSizer(wx.BoxSizer(wx.VERTICAL))
sizer = wx.BoxSizer(wx.VERTICAL)
self.Sizer.Add(sizer, 1, wx.EXPAND | wx.ALL, 6)
sub_sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(sub_sizer, 0, wx.EXPAND)
max_width = 0
max_height = 0
for label in (
self.SERVER_LABEL,
self.PORT_LABEL,
self.USER_LABEL,
self.PASSWORD_LABEL,
):
w, h, _, _ = self.GetFullTextExtent(label)
max_width = max(w, max_width)
max_height = max(h, max_height)
lsize = wx.Size(max_width, max_height)
sub_sizer.Add(
wx.StaticText(self, label="Server:", size=lsize),
0,
wx.ALIGN_RIGHT | wx.ALIGN_BOTTOM,
)
sub_sizer.AddSpacer(2)
self.omero_server_ctrl = wx.TextCtrl(self, value=self.server)
sub_sizer.Add(self.omero_server_ctrl, 1, wx.EXPAND)
sizer.AddSpacer(2)
sub_sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(sub_sizer, 0, wx.EXPAND)
sub_sizer.Add(
wx.StaticText(self, label="Port:", size=lsize),
0,
wx.ALIGN_RIGHT | wx.ALIGN_BOTTOM,
)
self.omero_port_ctrl = wx.TextCtrl(self, value=str(self.port))
sub_sizer.Add(self.omero_port_ctrl, 1, wx.EXPAND)
sizer.AddSpacer(5)
sub_sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(sub_sizer, 0, wx.EXPAND)
sub_sizer.Add(
wx.StaticText(self, label="User:"******"Password:"******"",
style=wx.TE_PASSWORD)
sub_sizer.Add(self.omero_password_ctrl, 1, wx.EXPAND)
sizer.AddSpacer(5)
sub_sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(sub_sizer, 0, wx.EXPAND)
connect_button = wx.Button(self, label="Connect")
connect_button.Bind(wx.EVT_BUTTON, self.on_connect_pressed)
sub_sizer.Add(connect_button, 0, wx.EXPAND)
sub_sizer.AddSpacer(5)
self.message_ctrl = wx.StaticText(self, label="Not connected")
sub_sizer.Add(self.message_ctrl, 1, wx.EXPAND)
button_sizer = wx.StdDialogButtonSizer()
self.Sizer.Add(button_sizer, 0, wx.EXPAND)
cancel_button = wx.Button(self, wx.ID_CANCEL)
button_sizer.AddButton(cancel_button)
cancel_button.Bind(wx.EVT_BUTTON, self.on_cancel)
self.ok_button = wx.Button(self, wx.ID_OK)
button_sizer.AddButton(self.ok_button)
self.ok_button.Bind(wx.EVT_BUTTON, self.on_ok)
self.ok_button.Enable(False)
button_sizer.Realize()
self.omero_password_ctrl.Bind(wx.EVT_TEXT, self.mark_dirty)
self.omero_port_ctrl.Bind(wx.EVT_TEXT, self.mark_dirty)
self.omero_server_ctrl.Bind(wx.EVT_TEXT, self.mark_dirty)
self.omero_user_ctrl.Bind(wx.EVT_TEXT, self.mark_dirty)
self.Layout()
def set_omero_credentials_from_string(credentials_string):
"""Set the OMERO server / port / session ID
credentials_string: a comma-separated key/value pair string (key=value)
that gives the credentials. Keys are
host - the DNS name or IP address of the OMERO server
port - the TCP port to use to connect
user - the user name
session-id - the session ID used for authentication
"""
if re.match("([^=^,]+=[^=^,]+,)*([^=^,]+=[^=^,]+)",
credentials_string) is None:
logging.root.error(
'The OMERO credentials string, "%s", is badly-formatted.' %
credentials_string)
logging.root.error(
'It should have the form: "host=hostname.org,port=####,user=<user>,session-id=<session-id>\n'
)
raise ValueError("Invalid format for --omero-credentials")
credentials = {}
for k, v in [kv.split("=", 1) for kv in credentials_string.split(",")]:
k = k.lower()
credentials = {
bioformats.formatreader.K_OMERO_SERVER: get_omero_server(),
bioformats.formatreader.K_OMERO_PORT: get_omero_port(),
bioformats.formatreader.K_OMERO_USER: get_omero_user(),
bioformats.formatreader.K_OMERO_SESSION_ID: get_omero_session_id(),
}
if k == OMERO_CK_HOST:
set_omero_server(v, globally=False)
credentials[bioformats.formatreader.K_OMERO_SERVER] = v
elif k == OMERO_CK_PORT:
set_omero_port(v, globally=False)
credentials[bioformats.formatreader.K_OMERO_PORT] = v
elif k == OMERO_CK_SESSION_ID:
credentials[bioformats.formatreader.K_OMERO_SESSION_ID] = v
elif k == OMERO_CK_USER:
set_omero_user(v, globally=False)
credentials[bioformats.formatreader.K_OMERO_USER] = v
elif k == OMERO_CK_PASSWORD:
credentials[bioformats.formatreader.K_OMERO_PASSWORD] = v
elif k == OMERO_CK_CONFIG_FILE:
credentials[bioformats.formatreader.K_OMERO_CONFIG_FILE] = v
if not os.path.isfile(v):
msg = "Cannot find OMERO config file, %s" % v
logging.root.error(msg)
raise ValueError(msg)
else:
logging.root.error('Unknown --omero-credentials keyword: "%s"' % k)
logging.root.error('Acceptable keywords are: "%s"' % '","'.join(
[OMERO_CK_HOST, OMERO_CK_PORT, OMERO_CK_SESSION_ID]))
raise ValueError("Invalid format for --omero-credentials")
bioformats.formatreader.use_omero_credentials(credentials)