def test_modification_date():
test_file = 'tests/fixtures/timestamp-test.txt'
mod_date = modification_date(test_file)
expected_year = 2015
expected_month = 8
expected_day = 11
assert expected_year == mod_date.year
assert expected_month == mod_date.month
assert expected_day == mod_date.day
def status(self, case_obj):
"""Check the status of an (existing) analysis.
Args:
case_obj (Family): initialized case class object
"""
logger.debug('load MIP family')
payload = {'status': analysis_status(case_obj)}
if payload['status'] == 'finished':
finish_date = modification_date(case_obj.sampleinfo_path)
payload['finished_at'] = stringify_date(finish_date)
return payload
def get(self, cust_id, case_id, seq_type=None):
"""Return data on an analysis."""
case_obj = self._get_case(cust_id, case_id, seq_type)
id_mapping = self._map_sample_ids(case_obj.ped.individuals)
analysis_type = 'WGS' if case_obj.is_wgs else 'EXO'
analysis_data = {
'analyzed_at': stringify_date(case_obj.analyzed_at),
'is_complete': case_obj.is_complete,
'ready_vcf': case_obj.ready_vcf,
'analysis_type': analysis_type,
'id_mapping': id_mapping,
'chanjo_output': dict(case_obj.chanjo_sample_outputs()),
}
if case_obj.is_complete:
finished_at = modification_date(case_obj.sampleinfo_path)
analysis_data['finished_at'] = stringify_date(finished_at)
return analysis_data
