def get_all_isi_epoch(session,area,unit,epoch):
'''
Returns the durations of all ISI intervals from the given session, area,
unit, and epoch
'''
all_isi = []
for trial in cgid.data_loader.get_valid_trials(session,area):
spk = get_spikes_epoch(session,area,unit,trial,epoch)
isi = diff(spk)
all_isi.extend(isi)
return array(all_isi)
def get_all_ibi_epoch(session,area,unit,epoch,thr):
if dowarn(): print 'note: threshold is in ms, defaults to 5'
all_ibi = []
if thr==None: thr=5
for trial in cgid.data_loader.get_valid_trials(session,area):
spk = get_spikes_epoch(session,area,unit,trial,epoch)
if spk==None:
warn('ERROR %s %s %s %s'%(session,area,unit,epoch))
assert 0
if len(spk)<2: continue
isi = diff(spk)
burst = spk[find(isi<=thr)]
if len(burst)>2:
all_ibi.extend(diff(burst))
return array(all_ibi)
def get_all_ibi_merged_epoch(session,area,unit,epoch,thr):
if dowarn(): print 'note: threshold is in ms, defaults to 5'
if dowarn(): print 'note: misses burst if starts on 1st spike, TODOFIX'
all_ibi = []
if thr==None: thr=5
for trial in cgid.data_loader.get_valid_trials(session,area):
spk = get_spikes_epoch(session,area,unit,trial,epoch)
if spk==None:
warn('ERROR %s %s %s %s'%(session,area,unit,epoch))
assert 0
if len(spk)<3: continue
isi = diff(spk)
short = isi<thr
burst = spk[find(diff(int32(short))==1)+1]
if len(burst)>2:
all_ibi.extend(diff(burst))
return array(all_ibi)