def __init__(self, n_actions):
Serializable.__init__(self, n_actions)
cgt.set_precision('double')
n_in = 128
o_no = cgt.matrix("o_no",fixed_shape=(None,n_in))
a_n = cgt.vector("a_n",dtype='i8')
q_n = cgt.vector("q_n")
oldpdist_np = cgt.matrix("oldpdists")
h0 = (o_no - 128.0)/128.0
nhid = 64
h1 = cgt.tanh(nn.Affine(128,nhid,weight_init=nn.IIDGaussian(std=.1))(h0))
probs_na = nn.softmax(nn.Affine(nhid,n_actions,weight_init=nn.IIDGaussian(std=0.01))(h1))
logprobs_na = cgt.log(probs_na)
b = cgt.size(o_no, 0)
logps_n = logprobs_na[cgt.arange(b), a_n]
surr = (logps_n*q_n).mean()
kl = (oldpdist_np * cgt.log(oldpdist_np/probs_na)).sum(axis=1).mean()
params = nn.get_parameters(surr)
gradsurr = cgt.grad(surr, params)
flatgrad = cgt.concatenate([p.flatten() for p in gradsurr])
lam = cgt.scalar()
penobj = surr - lam * kl
self._f_grad_lagrangian = cgt.function([lam, oldpdist_np, o_no, a_n, q_n],
cgt.concatenate([p.flatten() for p in cgt.grad(penobj,params)]))
self.f_pdist = cgt.function([o_no], probs_na)
self.f_probs = cgt.function([o_no], probs_na)
self.f_surr_kl = cgt.function([oldpdist_np, o_no, a_n, q_n], [surr, kl])
self.f_gradlogp = cgt.function([oldpdist_np, o_no, a_n, q_n], flatgrad)
self.pc = ParamCollection(params)
def test_cudnn():
compile_info = get_compile_info()
if not (compile_info["CGT_ENABLE_CUDNN"] and compile_info["CGT_ENABLE_CUDA"]):
raise SkipTest("CUDNN not enabled. Skipping this test")
Xval = nr.randn(2,3,19,18)
Wval = nr.randn(5,3,3,3)
bval = nr.randn(1,5,1,1)
X = cgt.tensor4("X", fixed_shape=Xval.shape)
W = cgt.tensor4("W", fixed_shape=Wval.shape)
b = cgt.tensor4("b", fixed_shape=bval.shape)
Y = cgt.core.Result(cudnn_ops.CudnnConvForward(1,1,1,1),[X, W, b])
Y2 = nr.randn(*cgt.core.infer_shape(Y))
fY = cgt.function([X,W,b],Y)
Yval = fY(Xval,Wval,bval)
cost = (Y*Y2).sum()
fcost = cgt.function([X,W,b],cost)
fgrad = cgt.function([X,W,b],cgt.grad(cost, [X,W,b]))
angrads = fgrad(Xval,Wval,bval)
nugrads = numeric_grad_multi(fcost, [Xval, Wval, bval],eps=1e-3)
for (nugrad,angrad) in zip(nugrads,angrads):
assert np.allclose(nugrad, angrad, rtol=9e-3, atol=1e-7)
def test_cudnn():
if not get_compile_info()["CGT_ENABLE_CUDNN"]:
raise SkipTest("CUDNN not enabled. Skipping this test")
Xval = nr.randn(2, 3, 19, 18)
Wval = nr.randn(5, 3, 3, 3)
bval = nr.randn(1, 5, 1, 1)
X = cgt.tensor4("X", fixed_shape=Xval.shape)
W = cgt.tensor4("W", fixed_shape=Wval.shape)
b = cgt.tensor4("b", fixed_shape=bval.shape)
Y = cgt.core.Result(cudnn_ops.CudnnConvForward(1, 1, 1, 1), [X, W, b])
Y2 = nr.randn(*cgt.core.infer_shape(Y))
fY = cgt.function([X, W, b], Y)
Yval = fY(Xval, Wval, bval)
cost = (Y * Y2).sum()
fcost = cgt.function([X, W, b], cost)
fgrad = cgt.function([X, W, b], cgt.grad(cost, [X, W, b]))
angrads = fgrad(Xval, Wval, bval)
nugrads = numeric_grad_multi(fcost, [Xval, Wval, bval], eps=1e-3)
for (nugrad, angrad) in zip(nugrads, angrads):
assert np.allclose(nugrad, angrad)
def test_cudnn():
with cgt.scoped_update_config(precision="double",backend="native"):
if not get_compile_info()["CGT_ENABLE_CUDNN"]:
raise SkipTest("CUDNN not enabled. Skipping this test")
Xval = nr.randn(2,3,19,18)
Wval = nr.randn(5,3,3,3)
bval = nr.randn(1,5,1,1)
X = cgt.tensor4("X", fixed_shape=Xval.shape)
W = cgt.tensor4("W", fixed_shape=Wval.shape)
b = cgt.tensor4("b", fixed_shape=bval.shape)
Y = cgt.core.Result(cudnn_ops.CudnnConvForward(1,1,1,1),[X, W, b])
Y2 = nr.randn(*cgt.core.infer_shape(Y))
fY = cgt.function([X,W,b],Y)
Yval = fY(Xval,Wval,bval)
cost = (Y*Y2).sum()
fcost = cgt.function([X,W,b],cost)
fgrad = cgt.function([X,W,b],cgt.grad(cost, [X,W,b]))
angrads = fgrad(Xval,Wval,bval)
nugrads = numeric_grad_multi(fcost, [Xval, Wval, bval],eps=1e-3)
for (nugrad,angrad) in zip(nugrads,angrads):
assert np.allclose(nugrad, angrad)
def gradcheck_model(cost,
params,
extravars=(),
extravals=(),
atol=1e-8,
eps=1e-9):
precision = cgt.get_precision()
if precision == "single":
cgt.utils.warn(
"You're doing a gradient check with %s precision. Use double or better yet quad for best results"
% (precision))
assert all(param.is_input() for param in params)
assert len(extravars) == len(extravals)
# Convert to Argument nodes
param_args = [
cgt.core.Argument(typ=s.typ, name=s.name) if s.is_data() else s
for s in params
]
# Get new cost in terms o farguments
cost = cgt.core.clone(cost, replace=dict(zip(params, param_args)))
grads = cgt.grad(cost, param_args)
paramvals = [param.op.get_value() for param in params]
fcost = cgt.function(param_args, cost, givens=zip(extravars, extravals))
fgrad = cgt.function(param_args, grads, givens=zip(extravars, extravals))
angrads = fgrad(*paramvals)
nugrads = numeric_grad_multi(fcost, paramvals, eps=eps)
for (angrad, nugrad) in zip(angrads, nugrads):
assert np.allclose(angrad, nugrad, atol=atol)
def check_scalar_grads(precision, backend):
cgt.reset_config()
np.random.seed(0)
cgt.set_precision(precision)
cgt.core.update_config(backend=backend)
x = cgt.scalar('x')
y = cgt.scalar('y')
z = cgt.scalar('z')
vars = [x,y,z] #pylint: disable=W0622
vals = nr.rand(len(vars))+1
PROB2RESULT = {}
for ((key,_), cls) in it.chain(
it.izip(core.UNARY_INFO.items(),it.repeat(core.ElwiseUnary)),
it.izip(core.BINARY_INFO.items(),it.repeat(core.ElwiseBinary))
):
if key == "conj":
print "skipping conj"
continue
utils.colorprint(utils.Color.YELLOW, "Testing %s\n"%key)
if cls == core.ElwiseUnary:
n_in = 1
op = cls(key)
else:
n_in = 2
op = cls(key, (True,True))
inputvars = vars[0:n_in]
inputvals = vals[0:n_in]
out = core.Result(op, inputvars)
f = cgt.function(inputvars, out)
try:
grads = cgt.grad(out, inputvars)
except core.NonDifferentiable:
print "nondiff"
continue
if DISPLAY:
print "Function:"
cgt.print_tree(out)
print "Gradient original:"
cgt.print_tree(grads)
print "Gradient simplified:"
grads_simple = core.simplify(grads)
if DISPLAY: cgt.print_tree(grads_simple)
gradf = cgt.function(inputvars, grads)
eps = {"single":1e-4,"double":1e-9}[precision]
nugrad = numeric_grad(lambda li: f(*li), inputvals,eps=eps) #pylint: disable=W0640
cgtgrad = gradf(*inputvals)
np.testing.assert_almost_equal(nugrad,cgtgrad,decimal={"single":3,"double":6}[precision])
grad_count = core.count_nodes(grads_simple)
PROB2RESULT[key] = {}
PROB2RESULT[key]["grad"] = grad_count
if DISPLAY:
from thirdparty.tabulate import tabulate
print tabulate([[key,val["grad"]] for (key,val) in PROB2RESULT.iteritems()],headers=["funcname","gradcount"])
def __init__(self, obs_dim, ctrl_dim):
cgt.set_precision('double')
Serializable.__init__(self, obs_dim, ctrl_dim)
self.obs_dim = obs_dim
self.ctrl_dim = ctrl_dim
o_no = cgt.matrix("o_no",fixed_shape=(None,obs_dim))
a_na = cgt.matrix("a_na",fixed_shape = (None, ctrl_dim))
adv_n = cgt.vector("adv_n")
oldpdist_np = cgt.matrix("oldpdist", fixed_shape=(None, 2*ctrl_dim))
self.logstd = logstd_1a = nn.parameter(np.zeros((1, self.ctrl_dim)), name="std_1a")
std_1a = cgt.exp(logstd_1a)
# Here's where we apply the network
h0 = o_no
nhid = 32
h1 = cgt.tanh(nn.Affine(obs_dim,nhid,weight_init=nn.IIDGaussian(std=0.1))(h0))
h2 = cgt.tanh(nn.Affine(nhid,nhid,weight_init=nn.IIDGaussian(std=0.1))(h1))
mean_na = nn.Affine(nhid,ctrl_dim,weight_init=nn.IIDGaussian(std=0.01))(h2)
b = cgt.size(o_no, 0)
std_na = cgt.repeat(std_1a, b, axis=0)
oldmean_na = oldpdist_np[:, 0:self.ctrl_dim]
oldstd_na = oldpdist_np[:, self.ctrl_dim:2*self.ctrl_dim]
logp_n = ((-.5) * cgt.square( (a_na - mean_na) / std_na ).sum(axis=1)) - logstd_1a.sum()
oldlogp_n = ((-.5) * cgt.square( (a_na - oldmean_na) / oldstd_na ).sum(axis=1)) - cgt.log(oldstd_na).sum(axis=1)
ratio_n = cgt.exp(logp_n - oldlogp_n)
surr = (ratio_n*adv_n).mean()
pdists_np = cgt.concatenate([mean_na, std_na], axis=1)
# kl = cgt.log(sigafter/)
params = nn.get_parameters(surr)
oldvar_na = cgt.square(oldstd_na)
var_na = cgt.square(std_na)
kl = (cgt.log(std_na / oldstd_na) + (oldvar_na + cgt.square(oldmean_na - mean_na)) / (2 * var_na) - .5).sum(axis=1).mean()
lam = cgt.scalar()
penobj = surr - lam * kl
self._compute_surr_kl = cgt.function([oldpdist_np, o_no, a_na, adv_n], [surr, kl])
self._compute_grad_lagrangian = cgt.function([lam, oldpdist_np, o_no, a_na, adv_n],
cgt.concatenate([p.flatten() for p in cgt.grad(penobj,params)]))
self.f_pdist = cgt.function([o_no], pdists_np)
self.f_objs = cgt.function([oldpdist_np, o_no, a_na, adv_n], [surr, kl])
self.pc = ParamCollection(params)
def test_scalars():
np.random.seed(0)
x = cgt.scalar('x')
y = cgt.scalar('y')
z = cgt.scalar('z')
vars = [x,y,z] #pylint: disable=W0622
vals = nr.rand(len(vars))+1
PROB2RESULT = {}
for ((key,_), cls) in it.chain(
it.izip(core.UNARY_INFO.items(),it.repeat(core.ElwiseUnary)),
it.izip(core.BINARY_INFO.items(),it.repeat(core.ElwiseBinary))
):
if key == "conj":
print "skipping conj"
continue
utils.colorprint(utils.Color.YELLOW, "Testing %s\n"%key)
if cls == core.ElwiseUnary:
n_in = 1
op = cls(key)
else:
n_in = 2
op = cls(key, (True,True))
inputvars = vars[0:n_in]
inputvals = vals[0:n_in]
out = core.Result(op, inputvars)
f = cgt.function(inputvars, out)
try:
grads = cgt.grad(out, inputvars)
except core.NonDifferentiable:
print "nondiff"
continue
if DISPLAY:
print "Function:"
cgt.print_tree(out)
print "Gradient original:"
cgt.print_tree(grads)
print "Gradient simplified:"
grads_simple = core.simplify(grads)
if DISPLAY: cgt.print_tree(grads_simple)
gradf = cgt.function(inputvars, grads)
eps = {"single":1e-4,"double":1e-9}[cgt.get_precision()]
nugrad = numeric_grad(lambda li: f(*li), inputvals,eps=eps) #pylint: disable=W0640
cgtgrad = gradf(*inputvals)
np.testing.assert_almost_equal(nugrad,cgtgrad,decimal={"single":3,"double":6}[cgt.get_precision()])
grad_count = core.count_nodes(grads_simple)
PROB2RESULT[key] = {}
PROB2RESULT[key]["grad"] = grad_count
if DISPLAY:
from thirdparty.tabulate import tabulate
print tabulate([[key,val["grad"]] for (key,val) in PROB2RESULT.iteritems()],headers=["funcname","gradcount"])
def check_affine(f, *nu_inputs):
types = ",".join(["{%s,%s}" % (x.dtype, x.ndim) for x in nu_inputs])
cgt.utils.colorprint(cgt.utils.Color.YELLOW,
"Testing %s(%s)\n" % (f.__name__, types))
sy_inputs = map(tensor_like, nu_inputs)
for (i, sy) in enumerate(sy_inputs):
sy.name = "x%i" % i
sy_result = f(*sy_inputs)
def maybeprint(msg):
if DISPLAY: print msg
maybeprint("Function:")
if DISPLAY: cgt.print_tree([sy_result])
f_cgt = cgt.function(sy_inputs, sy_result)
sy_grads = cgt.grad(sy_result, sy_inputs)
gradf_cgt = cgt.function(sy_inputs, sy_grads)
sy_result_simple = core.simplify([sy_result])
sy_grads_simple = core.simplify(sy_grads)
maybeprint("Gradient:")
if DISPLAY: cgt.print_tree(sy_grads)
maybeprint("Gradient after simplification:")
if DISPLAY: cgt.print_tree(sy_grads_simple)
out_true = f(*nu_inputs)
out_cgt = f_cgt(*nu_inputs)
grads_true = gradients_affine(f_cgt,
nu_inputs,
h=1e-4 if "max" in f.__name__ else 1e-1)
grads_cgt = gradf_cgt(*nu_inputs)
rtol = {"single": 1e-3, "double": 1e-5}[cgt.get_precision()]
np.testing.assert_allclose(out_cgt, out_true, rtol=rtol)
for (g_cgt, g_true) in zip(grads_cgt, grads_true):
np.testing.assert_allclose(g_cgt, g_true, rtol=rtol)
result_count = cgt.count_nodes(sy_result_simple)
grad_count = cgt.count_nodes(sy_grads_simple)
maybeprint("Result before: %i. after: %i" %
(cgt.count_nodes([sy_result]), result_count))
maybeprint("Grad before: %i. after: %i" %
(cgt.count_nodes(sy_grads), grad_count))
PROB2RESULT[f.__name__] = {}
PROB2RESULT[f.__name__]["fn"] = result_count
PROB2RESULT[f.__name__]["grad"] = grad_count
def check_affine(f, *nu_inputs):
types = ",".join(["{%s,%s}" % (x.dtype, x.ndim) for x in nu_inputs])
cgt.utils.colorprint(cgt.utils.Color.YELLOW, "Testing %s(%s)\n" % (f.__name__, types))
sy_inputs = map(tensor_like, nu_inputs)
for (i, sy) in enumerate(sy_inputs):
sy.name = "x%i" % i
sy_result = f(*sy_inputs)
def maybeprint(msg):
if DISPLAY:
print msg
maybeprint("Function:")
if DISPLAY:
cgt.print_tree([sy_result])
f_cgt = cgt.function(sy_inputs, sy_result)
sy_grads = cgt.grad(sy_result, sy_inputs)
gradf_cgt = cgt.function(sy_inputs, sy_grads)
sy_result_simple = core.simplify([sy_result])
sy_grads_simple = core.simplify(sy_grads)
maybeprint("Gradient:")
if DISPLAY:
cgt.print_tree(sy_grads)
maybeprint("Gradient after simplification:")
if DISPLAY:
cgt.print_tree(sy_grads_simple)
out_true = f(*nu_inputs)
out_cgt = f_cgt(*nu_inputs)
grads_true = gradients_affine(f_cgt, nu_inputs, h=1e-4 if "max" in f.__name__ else 1e-1)
grads_cgt = gradf_cgt(*nu_inputs)
rtol = {"single": 1e-3, "double": 1e-5}[cgt.get_precision()]
np.testing.assert_allclose(out_cgt, out_true, rtol=rtol)
for (g_cgt, g_true) in zip(grads_cgt, grads_true):
np.testing.assert_allclose(g_cgt, g_true, rtol=rtol)
result_count = cgt.count_nodes(sy_result_simple)
grad_count = cgt.count_nodes(sy_grads_simple)
maybeprint("Result before: %i. after: %i" % (cgt.count_nodes([sy_result]), result_count))
maybeprint("Grad before: %i. after: %i" % (cgt.count_nodes(sy_grads), grad_count))
PROB2RESULT[f.__name__] = {}
PROB2RESULT[f.__name__]["fn"] = result_count
PROB2RESULT[f.__name__]["grad"] = grad_count
def __init__(self, xdim, args, dec="bernoulli"):
self.xdim = xdim
self.hdim = args.hdim
self.zdim = args.zdim
self.lmbda = args.lmbda # weight decay coefficient * 2
self.x = cgt.matrix("x", dtype=cgt.floatX)
self.eps = cgt.matrix("eps", dtype=cgt.floatX)
self.enc_mlp = GaussianMLP(self.x, self.xdim, self.hdim, self.zdim, nlayers=args.nlayers, eps=self.eps)
if dec == "bernoulli":
# log p(x | z) defined as -CE(x, y) = dec_mlp.cost(y)
self.dec_mlp = BernoulliMLP(self.enc_mlp.out, self.zdim, self.hdim, self.xdim, nlayers=args.nlayers, y=self.x)
elif dec == "gaussian":
self.dec_mlp = GaussianMLP(self.enc_mlp.out, self.zdim, self.hdim, self.xdim, nlayers=args.nlayers, y=self.x)
else:
raise RuntimeError("unrecognized decoder %" % dec)
self.cost = (-cgt.sum(kld_unit_mvn(self.enc_mlp.mu, self.enc_mlp.var)) + self.dec_mlp.cost) / args.batch_size
self.params = self.enc_mlp.params + self.dec_mlp.params
# L2 regularization
self.gparams = [cgt.grad(self.cost, [p])[0] + self.lmbda * p for p in self.params]
self.gaccums = [cgt.shared(np.zeros(p.op.get_value().shape, dtype=cgt.floatX)) for p in self.params]
# XXX replace w/ adagrad update from nn
ADAGRAD_EPS = 1e-10 # for stability
self.updates = [
(param, param - args.lr * gparam / cgt.sqrt(gaccum + cgt.square(gparam) + ADAGRAD_EPS))
for param, gparam, gaccum in zip(self.params, self.gparams, self.gaccums)
]
self.updates += [
(gaccum, gaccum + cgt.square(gparam))
for gaccum, gparam in zip(self.gaccums, self.gparams)
]
self.train = cgt.function(
[self.x, self.eps],
self.cost,
updates=self.updates
)
self.test = cgt.function(
[self.x, self.eps],
self.cost,
updates=None
)
# can be used for semi-supervised learning for example
self.encode = cgt.function(
[self.x, self.eps],
self.enc_mlp.out
)
def test_array_wrapper():
xval = np.zeros(10)
x = cgt.shared(xval)
f = cgt.function([], [], updates=[(x, x + 1)])
f()
g = cgt.function([], x.sum())
assert np.allclose(x.op.get_value(), xval + 1)
xval2 = np.arange(10)
x.op.set_value(xval2)
print x.op.get_value()
assert np.allclose(x.op.get_value(), xval2)
assert g() == xval2.sum()
f()
assert np.allclose(x.op.get_value(), xval2 + 1)
assert g() == (xval2 + 1).sum()
def test_im2col():
for settings in [ ((4,4),(0,0),(1,1)), ((3,3),(1,1),(2,2)), ((3,3),(1,1),(3,3)) ]:
xval = np.arange(2*1*28*28).reshape(2,1,28,28).astype(cgt.floatX)
x = cgt.tensor4("x", fixed_shape=xval.shape)
y = im2col(x, *settings)
h = cgt.constant(np.random.randn(*cgt.infer_shape(y)))
cost = (y*h).sum()
fcost = cgt.function([x],cost)
fgrad = cgt.function([x], cgt.grad(cost, [x])[0])
from cgt.numeric_diff import numeric_grad
gnum = numeric_grad(fcost, xval,eps=1e-5)
gana = fgrad(xval)
assert np.allclose(gnum, gana)
def test_array_wrapper():
xval = np.zeros(10)
x = cgt.shared(xval)
f = cgt.function([],[],updates=[(x,x+1)])
f()
g = cgt.function([],x.sum())
assert np.allclose(x.op.get_value(), xval+1)
xval2 = np.arange(10)
x.op.set_value(xval2)
print x.op.get_value()
assert np.allclose(x.op.get_value(), xval2)
assert g() == xval2.sum()
f()
assert np.allclose(x.op.get_value(), xval2+1)
assert g() == (xval2+1).sum()
def test_get_decoder_state():
batch_size = 32
feat_t_steps = 20
feat_num_features = 42
num_out_classes = 28
num_out_classes_true = num_out_classes + 2 # Start, end, are added
decoder_size = 50
tau = np.reshape(np.random.normal(0.1, 0.2, batch_size*feat_t_steps*feat_num_features), (batch_size, feat_t_steps, feat_num_features))
tau2 = np.reshape(np.random.normal(0.1, 0.2, batch_size*feat_num_features), (batch_size, feat_num_features))
tau3 = np.reshape(np.random.normal(0.1, 0.2, batch_size*num_out_classes_true), (batch_size, num_out_classes_true))
feats = cgt.tensor3(fixed_shape=(batch_size, feat_t_steps, feat_num_features))
s = nnbuilder.Seq2Seq(nn_input_btf=feats, num_out_classes=num_out_classes,
decoder_size=decoder_size, feature_size=feat_num_features)
context_bf = cgt.matrix(fixed_shape=(batch_size, feat_num_features))
prev_out_bc = cgt.matrix(fixed_shape=(batch_size, num_out_classes_true))
state_i_bf = nn.parameter(nn.init_array(nn.IIDGaussian(0.1), (batch_size, decoder_size)), name="decoder_init")
decoder_out = s.get_decoder_state(context_bf, prev_out_bc, state_i_bf)
decode_fun = cgt.function([feats, context_bf, prev_out_bc], [decoder_out])
m = decode_fun(tau, tau2, tau3)[0]
assert m.shape == (batch_size, decoder_size)
assert np.mean(m) < 1.0
def test_conv():
try:
import scipy.signal
except ImportError:
raise SkipTest("skipping because we don't have ndimage")
np.random.seed(0)
x = np.random.randn(2,2,5,17)
filt = np.random.randn(3,2,4,7)
filtrows = filt.shape[2]
filtcols = filt.shape[3]
batchsize = x.shape[0]
outchans = filt.shape[0]
out = np.zeros((batchsize,outchans,x.shape[2]+filtrows-1,x.shape[3]+filtcols-1))
for b in xrange(x.shape[0]):
for inchan in xrange(x.shape[1]):
for outchan in xrange(outchans):
out[b,outchan] += scipy.signal.convolve2d(x[b,inchan],filt[outchan,inchan][::-1,::-1],mode='full')
f = cgt.function([], nn.conv2d(cgt.constant(x), cgt.constant(filt), kernelshape=(filtrows,filtcols), pad=(filtrows-1, filtcols-1)))
out1 = f()
# out1 = cgt.numeric_eval1(nn.conv2d(cgt.constant(x), cgt.constant(f), kersize=(filtrows,filtcols)), {})
np.testing.assert_allclose(out, out1, atol={"single":1e-3,"double":1e-6}[cgt.get_precision()])
def test_setting_weights():
X = cgt.matrix("X", fixed_shape=(None, 28*28))
model = build_model(X, 0.0)
nnbuilder.set_all_weights(model, 'mnist.p')
y = cgt.vector("y", dtype='i8')
cost = -cgt.mean(categorical.loglik(y, model))
selected_number = cgt.argmax(model, axis=1)
err_nodrop = cgt.cast(cgt.not_equal(selected_number, y), cgt.floatX).mean()
computeloss = cgt.function(inputs=[X, y], outputs=[err_nodrop, cost])
Xdata, ydata = load_data()
Xtrain = Xdata[0:60000]
ytrain = ydata[0:60000]
Xtest = Xdata[60000:70000]
ytest = ydata[60000:70000]
sortinds = np.random.permutation(60000)
Xtrain = Xtrain[sortinds]
ytrain = ytrain[sortinds]
print fmt_row(10, ["Epoch","Train NLL","Train Err","Test NLL","Test Err","Epoch Time"])
for i_epoch in xrange(3):
tstart = time.time()
elapsed = time.time() - tstart
trainerr, trainloss = computeloss(Xtrain[:len(Xtest)], ytrain[:len(Xtest)])
testerr, testloss = computeloss(Xtest, ytest)
print fmt_row(10, [i_epoch, trainloss, trainerr, testloss, testerr, elapsed])
def check_conv(precision):
cgt.reset_config()
cgt.set_precision(precision)
f = cgt.function([], nn.conv2d(cgt.constant(x), cgt.constant(filt), kernelshape=(filtrows,filtcols), pad=(filtrows-1, filtcols-1)))
out1 = f()
# out1 = cgt.numeric_eval1(nn.conv2d(cgt.constant(x), cgt.constant(f), kersize=(filtrows,filtcols)), {})
np.testing.assert_allclose(out, out1, atol={"single":1e-3,"double":1e-6}[precision])
def runtest(backend, precision):
with cgt.scoped_update_config(backend='native', precision=precision):
xval = np.zeros(10)
x = cgt.shared(xval)
f = cgt.function([], [], updates=[(x, x + 1)])
f()
g = cgt.function([], x.sum())
assert np.allclose(x.op.get_value(), xval + 1)
xval2 = np.arange(10)
x.op.set_value(xval2)
print x.op.get_value()
assert np.allclose(x.op.get_value(), xval2)
assert g() == xval2.sum()
f()
assert np.allclose(x.op.get_value(), xval2 + 1)
assert g() == (xval2 + 1).sum()
def test_get_character_distribution():
batch_size = 32
feat_t_steps = 20
feat_num_features = 42
num_out_classes = 28 # This is the index of the start token.
num_out_classes_true = num_out_classes + 2 # Add start and end tokens automatically.
decoder_size = 50
tau = np.reshape(np.random.normal(0.1, 0.2, batch_size*feat_t_steps*feat_num_features), (batch_size, feat_t_steps, feat_num_features))
tau2 = np.reshape(np.random.normal(0.1, 0.2, batch_size*feat_num_features), (batch_size, feat_num_features))
tau3 = np.reshape(np.random.normal(0.1, 0.2, batch_size*decoder_size), (batch_size, decoder_size))
feats = cgt.tensor3(fixed_shape=(batch_size, feat_t_steps, feat_num_features))
s = nnbuilder.Seq2Seq(nn_input_btf=feats, num_out_classes=num_out_classes,
decoder_size=decoder_size, feature_size=feat_num_features)
context_bf = cgt.matrix(fixed_shape=(batch_size, feat_num_features))
state_bf = cgt.matrix(fixed_shape=(batch_size, decoder_size))
m_out = s.get_character_distribution(state_bf, context_bf)
out_fun = cgt.function([feats, context_bf, state_bf], [m_out])
m = out_fun(tau, tau2, tau3)[0]
assert m.shape == (batch_size, num_out_classes_true)
def test_devices():
N = 10
K = 3
compile_info = cgt.compilation.get_compile_info()
cuda_enabled = compile_info["CGT_ENABLE_CUDA"]
if not cuda_enabled:
raise SkipTest("cuda disabled")
Xval = np.random.randn(N, K).astype(cgt.floatX)
wval = np.random.randn(K).astype(cgt.floatX)
bval = np.asarray(np.random.randn()).astype(cgt.floatX)
yval = np.random.randn(N).astype(cgt.floatX)
with cgt.scoped_update_config(default_device=cgt.Device(devtype="gpu")):
X_nk = cgt.shared(Xval, "X", device=cgt.Device(devtype='gpu'))
y_n = cgt.shared(yval, "y")
w_k = cgt.shared(wval, "w")
b = cgt.shared(bval, name="b")
print "bval", bval
ypred = cgt.dot(cgt.square(X_nk), w_k) + b
err = cgt.sum(cgt.sin(ypred - y_n))
g = cgt.grad(err, [w_k, b])
outputs = [err] + g
f = cgt.function([], [err] + g)
results = f()
print results
assert np.allclose(
results[0],
np.sin(np.square(Xval).dot(wval) + bval - yval).sum())
def test_matmuls():
with cgt.scoped_update_config(parallel = True, backend="native"):
m = 8
d = 1000
# build graph
X = cgt.matrix("X")
Y = cgt.matrix("Y")
loss=0
for k in xrange(m):
# loss = loss+cgt.sin(X*Y+k).sum()
loss = loss+(X.dot(Y+k)).sum()
f = cgt.function([X,Y], loss)
# test things out!
seed(0)
X_val = randn(d, d)
Y_val = randn(d, d)
vals = [X_val, Y_val]
tic = time.time()
out = f(*vals)
toc = time.time()
print toc-tic
def test_shape_err():
with CaptureStderr():
with cgt.scoped_update_config(debug=True, backend="python"):
x = cgt.vector()
y = cgt.vector()
f = cgt.function([x,y],x+y)
f(np.zeros(3),np.zeros(4))
def function(inputs,
outputs,
updates=None,
givens=None,
allow_input_downcast=None,
on_unused_input=None):
if is_theano():
allow_input_downcast = allow_input_downcast or False
on_unused_input = on_unused_input or 'raise'
return theano.function(inputs,
outputs,
updates=updates,
givens=givens,
allow_input_downcast=allow_input_downcast,
on_unused_input=on_unused_input)
elif is_cgt():
return cgt.function(inputs, outputs, updates=updates, givens=givens)
elif is_tf():
return TfFunctionWrapper(inputs=inputs,
outputs=outputs,
updates=updates,
givens=givens)
elif is_mxnet():
return MxFunctionWrapper(inputs=inputs,
outputs=outputs,
updates=updates,
givens=givens)
def test_flatvec():
cgt.reset_config
cgt.set_precision('double')
cgt.core.update_config(backend="python") # XXX
N = 10
K = 3
Xval = np.random.randn(N,K)
wval = np.random.randn(K)
bval = np.random.randn()
yval = np.random.randn(N)
X_nk = cgt.shared(Xval, "X")
y_n = cgt.shared(yval, "y")
w_k = cgt.shared(wval, "w")
b = cgt.shared(bval, name="b")
ypred = cgt.dot(X_nk, w_k) + b
err = cgt.sum(cgt.square(ypred - y_n))
g = cgt.grad(err, [w_k, b])
g = core.simplify(g)
pars = [w_k, b]
flatx = nn.setup_contiguous_storage(pars)
f = cgt.function([], [err,cgt.flatcat(g)])
def test_matmuls():
with cgt.scoped_update_config(parallel=True):
m = 8
d = 1000
# build graph
X = cgt.matrix("X")
Y = cgt.matrix("Y")
loss = 0
for k in xrange(m):
# loss = loss+cgt.sin(X*Y+k).sum()
loss = loss + (X.dot(Y + k)).sum()
f = cgt.function([X, Y], loss)
# test things out!
seed(0)
X_val = randn(d, d)
Y_val = randn(d, d)
vals = [X_val, Y_val]
tic = time.time()
out = f(*vals)
toc = time.time()
print toc - tic
def runtest(backend, precision):
with cgt.scoped_update_config(backend='native',precision=precision):
xval = np.zeros(10)
x = cgt.shared(xval)
f = cgt.function([],[],updates=[(x,x+1)])
f()
g = cgt.function([],x.sum())
assert np.allclose(x.op.get_value(), xval+1)
xval2 = np.arange(10)
x.op.set_value(xval2)
print x.op.get_value()
assert np.allclose(x.op.get_value(), xval2)
assert g() == xval2.sum()
f()
assert np.allclose(x.op.get_value(), xval2+1)
assert g() == (xval2+1).sum()
def test_flatvec():
cgt.reset_config
cgt.set_precision('double')
cgt.core.update_config(backend="python") # XXX
N = 10
K = 3
Xval = np.random.randn(N, K)
wval = np.random.randn(K)
bval = np.random.randn()
yval = np.random.randn(N)
X_nk = cgt.shared(Xval, "X")
y_n = cgt.shared(yval, "y")
w_k = cgt.shared(wval, "w")
b = cgt.shared(bval, name="b")
ypred = cgt.dot(X_nk, w_k) + b
err = cgt.sum(cgt.square(ypred - y_n))
g = cgt.grad(err, [w_k, b])
g = core.simplify(g)
pars = [w_k, b]
flatx = nn.setup_contiguous_storage(pars)
f = cgt.function([], [err, cgt.flatcat(g)])
def make_funcs(config, dbg_out={}):
net_in, net_out = hybrid_network(config['num_inputs'], config['num_outputs'],
config['num_units'], config['num_sto'],
dbg_out=dbg_out)
if not config['dbg_out_full']: dbg_out = {}
# def f_sample(_inputs, num_samples=1, flatten=False):
# _mean, _var = f_step(_inputs)
# _samples = []
# for _m, _v in zip(_mean, _var):
# _s = np.random.multivariate_normal(_m, np.diag(np.sqrt(_v)), num_samples)
# if flatten: _samples.extend(_s)
# else: _samples.append(_s)
# return np.array(_samples)
Y_gt = cgt.matrix("Y")
Y_prec = cgt.tensor3('V', fixed_shape=(None, config['num_inputs'], config['num_inputs']))
params = nn.get_parameters(net_out)
size_batch, size_out = net_out.shape
inputs, outputs = [net_in], [net_out]
if config['no_bias']:
print "Excluding bias"
params = [p for p in params if not p.name.endswith(".b")]
loss_vec = dist.gaussian.logprob(Y_gt, net_out, Y_prec)
if config['weight_decay'] > 0.:
print "Applying penalty on parameter norm"
params_flat = cgt.concatenate([p.flatten() for p in params])
loss_param = config['weight_decay'] * cgt.sum(params_flat ** 2)
loss_vec -= loss_param # / size_batch
loss = cgt.sum(loss_vec) / size_batch
# TODO_TZ f_step seems not to fail if X has wrong dim
f_step = cgt.function(inputs, outputs)
f_surr = get_surrogate_func(inputs + [Y_prec, Y_gt], outputs,
[loss_vec], params, _dbg_out=dbg_out)
return params, f_step, None, None, None, f_surr
def test_devices():
N = 10
K = 3
compile_info = cgt.compilation.get_compile_info()
cuda_enabled = compile_info["CGT_ENABLE_CUDA"]
if not cuda_enabled:
raise SkipTest("cuda disabled")
Xval = np.random.randn(N,K).astype(cgt.floatX)
wval = np.random.randn(K).astype(cgt.floatX)
bval = np.asarray(np.random.randn()).astype(cgt.floatX)
yval = np.random.randn(N).astype(cgt.floatX)
with cgt.scoped_update_config(default_device=cgt.Device(devtype="gpu")):
X_nk = cgt.shared(Xval, "X", device=cgt.Device(devtype='gpu'))
y_n = cgt.shared(yval, "y")
w_k = cgt.shared(wval, "w")
b = cgt.shared(bval, name="b")
print "bval",bval
ypred = cgt.dot(cgt.square(X_nk), w_k) + b
err = cgt.sum(cgt.sin(ypred - y_n))
g = cgt.grad(err, [w_k, b])
outputs = [err]+g
f = cgt.function([], [err]+g)
results = f()
print results
assert np.allclose(results[0] , np.sin(np.square(Xval).dot(wval)+bval-yval).sum())
def make_loss_and_grad_and_step(arch, size_input, size_output, size_mem,
size_batch, n_layers, n_unroll, k_in, k_h):
# symbolic variables
x_tnk = cgt.tensor3()
targ_tnk = cgt.tensor3()
#make_network = make_deep_lstm if arch=="lstm" else make_deep_gru
make_network = make_deep_rrnn_rot_relu
network = make_network(size_input, size_mem, n_layers, size_output,
size_batch, k_in, k_h)
init_hiddens = [
cgt.matrix() for _ in xrange(get_num_hiddens(arch, n_layers))
]
# TODO fixed sizes
cur_hiddens = init_hiddens
loss = 0
for t in xrange(n_unroll):
outputs = network([x_tnk[t]] + cur_hiddens)
cur_hiddens, prediction_logprobs = outputs[:-1], outputs[-1]
# loss = loss + nn.categorical_negloglik(prediction_probs, targ_tnk[t]).sum()
loss = loss - (prediction_logprobs * targ_tnk[t]).sum()
cur_hiddens = outputs[:-1]
final_hiddens = cur_hiddens
loss = loss / (n_unroll * size_batch)
params = network.get_parameters()
gradloss = cgt.grad(loss, params)
flatgrad = flatcat(gradloss)
with utils.Message("compiling loss+grad"):
f_loss_and_grad = cgt.function([x_tnk, targ_tnk] + init_hiddens,
[loss, flatgrad] + final_hiddens)
f_loss = cgt.function([x_tnk, targ_tnk] + init_hiddens, loss)
assert len(init_hiddens) == len(final_hiddens)
x_nk = cgt.matrix('x')
outputs = network([x_nk] + init_hiddens)
f_step = cgt.function([x_nk] + init_hiddens, outputs)
# print "node count", cgt.count_nodes(flatgrad)
return network, f_loss, f_loss_and_grad, f_step
def test_cpu_pool(**kwargs):
np.random.seed(0)
x = cgt.tensor4("x", fixed_shape=(2, 3, 5, 7))
y = max_pool_2d(x, (4, 4), (0, 0), (1, 1))
xval = np.random.randn(2, 3, 5, 7)
hval = np.random.randn(*cgt.infer_shape(y))
h = cgt.constant(hval)
cost = (y * h).sum()
fcost = cgt.function([x], cost)
fgrad = cgt.function([x], cgt.grad(cost, [x])[0])
from cgt.numeric_diff import numeric_grad
gnum = numeric_grad(fcost, xval)
gana = fgrad(xval)
assert np.allclose(gnum, gana)
def test_im2col():
for settings in [((4, 4), (0, 0), (1, 1)), ((3, 3), (1, 1), (2, 2)),
((3, 3), (1, 1), (3, 3))]:
xval = np.arange(2 * 1 * 28 * 28).reshape(2, 1, 28,
28).astype(cgt.floatX)
x = cgt.tensor4("x", fixed_shape=xval.shape)
y = im2col(x, *settings)
h = cgt.constant(np.random.randn(*cgt.infer_shape(y)))
cost = (y * h).sum()
fcost = cgt.function([x], cost)
fgrad = cgt.function([x], cgt.grad(cost, [x])[0])
from cgt.numeric_diff import numeric_grad
gnum = numeric_grad(fcost, xval, eps=1e-5)
gana = fgrad(xval)
assert np.allclose(gnum, gana)
def test_pool(**kwargs):
np.random.seed(0)
x = cgt.tensor4("x", fixed_shape=(2,3,5,7))
y = max_pool_2d(x, (4,4),(0,0),(1,1))
xval = np.random.randn(2,3,5,7)
hval = np.random.randn(*cgt.infer_shape(y))
h = cgt.constant(hval)
cost = (y*h).sum()
fcost = cgt.function([x], cost)
fgrad = cgt.function([x], cgt.grad(cost, [x])[0])
from cgt.numeric_diff import numeric_grad
gnum = numeric_grad(fcost, xval)
gana = fgrad(xval)
assert np.allclose(gnum,gana)
def main():
parser = argparse.ArgumentParser()
parser.add_argument("--profile",action="store_true")
parser.add_argument("--unittest",action="store_true")
parser.add_argument("--epochs",type=int,default=10)
args = parser.parse_args()
batchsize = 64
Xshape = (batchsize, 3, 32, 32)
X = cgt.tensor4("X", fixed_shape = Xshape)
y = cgt.vector("y", fixed_shape = (batchsize,), dtype='i4')
conv1 = nn.SpatialConvolution(3, 32, kernelshape=(5,5), pad=(2,2),
weight_init=nn.IIDGaussian(std=1e-4))(X)
relu1 = nn.rectify(conv1)
pool1 = nn.max_pool_2d(relu1, kernelshape=(3,3), stride=(2,2))
conv2 = nn.SpatialConvolution(32, 32, kernelshape=(5,5), pad=(2,2),
weight_init=nn.IIDGaussian(std=0.01))(relu1)
relu2 = nn.rectify(conv2)
pool2 = nn.max_pool_2d(relu2, kernelshape=(3,3), stride=(2,2))
conv3 = nn.SpatialConvolution(32, 64, kernelshape=(5,5), pad=(2,2),
weight_init=nn.IIDGaussian(std=0.01))(pool2)
pool3 = nn.max_pool_2d(conv3, kernelshape=(3,3), stride=(2,2))
relu3 = nn.rectify(pool3)
d0,d1,d2,d3 = relu3.shape
flatlayer = relu3.reshape([d0,d1*d2*d3])
nfeats = cgt.infer_shape(flatlayer)[1]
ip1 = nn.Affine(nfeats, 10)(flatlayer)
logprobs = nn.logsoftmax(ip1)
loss = -logprobs[cgt.arange(batchsize), y].mean()
params = nn.get_parameters(loss)
updates = rmsprop_updates(loss, params, stepsize=1e-3)
train = cgt.function(inputs=[X, y], outputs=[loss], updates=updates)
if args.profile: cgt.profiler.start()
data = np.load("/Users/joschu/Data/cifar-10-batches-py/cifar10.npz")
Xtrain = data["X_train"]
ytrain = data["y_train"]
print fmt_row(10, ["Epoch","Train NLL","Train Err","Test NLL","Test Err","Epoch Time"])
for i_epoch in xrange(args.epochs):
for start in xrange(0, Xtrain.shape[0], batchsize):
tstart = time.time()
end = start+batchsize
print train(Xtrain[start:end], ytrain[start:end]), time.time()-tstart
if start > batchsize*5: break
# elapsed = time.time() - tstart
# trainerr, trainloss = computeloss(Xtrain[:len(Xtest)], ytrain[:len(Xtest)])
# testerr, testloss = computeloss(Xtest, ytest)
# print fmt_row(10, [i_epoch, trainloss, trainerr, testloss, testerr, elapsed])
if args.profile:
cgt.profiler.print_stats()
return
if args.unittest:
break
def main():
parser = argparse.ArgumentParser()
parser.add_argument("--profile",action="store_true")
parser.add_argument("--unittest",action="store_true")
parser.add_argument("--epochs",type=int,default=10)
args = parser.parse_args()
batchsize = 64
Xshape = (batchsize, 3, 32, 32)
X = cgt.tensor4("X", fixed_shape = Xshape)
y = cgt.vector("y", fixed_shape = (batchsize,), dtype='i4')
conv1 = nn.SpatialConvolution(3, 32, kernelshape=(5,5), pad=(2,2),
weight_init=nn.IIDGaussian(std=1e-4))(X)
relu1 = nn.rectify(conv1)
pool1 = nn.max_pool_2d(relu1, kernelshape=(3,3), stride=(2,2))
conv2 = nn.SpatialConvolution(32, 32, kernelshape=(5,5), pad=(2,2),
weight_init=nn.IIDGaussian(std=0.01))(pool1)
relu2 = nn.rectify(conv2)
pool2 = nn.max_pool_2d(relu2, kernelshape=(3,3), stride=(2,2))
conv3 = nn.SpatialConvolution(32, 64, kernelshape=(5,5), pad=(2,2),
weight_init=nn.IIDGaussian(std=0.01))(pool2)
pool3 = nn.max_pool_2d(conv3, kernelshape=(3,3), stride=(2,2))
relu3 = nn.rectify(pool3)
d0,d1,d2,d3 = relu3.shape
flatlayer = relu3.reshape([d0,d1*d2*d3])
nfeats = cgt.infer_shape(flatlayer)[1]
ip1 = nn.Affine(nfeats, 10)(flatlayer)
logprobs = nn.logsoftmax(ip1)
loss = -logprobs[cgt.arange(batchsize), y].mean()
params = nn.get_parameters(loss)
updates = rmsprop_updates(loss, params, stepsize=1e-3)
train = cgt.function(inputs=[X, y], outputs=[loss], updates=updates)
if args.profile: cgt.profiler.start()
data = fetch_dataset("http://rll.berkeley.edu/cgt-data/cifar10.npz")
Xtrain = data["X_train"]
ytrain = data["y_train"]
print fmt_row(10, ["Epoch","Train NLL","Train Err","Test NLL","Test Err","Epoch Time"])
for i_epoch in xrange(args.epochs):
for start in xrange(0, Xtrain.shape[0], batchsize):
tstart = time.time()
end = start+batchsize
print train(Xtrain[start:end], ytrain[start:end]), time.time()-tstart
if start > batchsize*5: break
# elapsed = time.time() - tstart
# trainerr, trainloss = computeloss(Xtrain[:len(Xtest)], ytrain[:len(Xtest)])
# testerr, testloss = computeloss(Xtest, ytest)
# print fmt_row(10, [i_epoch, trainloss, trainerr, testloss, testerr, elapsed])
if args.profile:
cgt.profiler.print_stats()
return
if args.unittest:
break
def test_update():
with cgt.scoped_update_config(parallel = True, backend="native"):
xval = np.array(1.5)
x = cgt.shared(xval)
f = cgt.function([], x.sum(), updates=[(x,x+1)])
before = x.op.get_value().copy()
f()
after = x.op.get_value()
assert np.allclose(after , before+1)
def make_updater_fc():
X = cgt.matrix("X", fixed_shape=(None, 28 * 28))
y = cgt.vector("y", dtype='i8')
stepsize = cgt.scalar("stepsize")
loss = build_fc_return_loss(X, y)
params = nn.get_parameters(loss)
gparams = cgt.grad(loss, params)
updates = [(p, p - stepsize * gp) for (p, gp) in zip(params, gparams)]
return cgt.function([X, y, stepsize], loss, updates=updates)
def test_update():
with cgt.scoped_update_config(parallel=True):
xval = np.array(1.5)
x = cgt.shared(xval)
f = cgt.function([], x.sum(), updates=[(x, x + 1)])
before = x.op.get_value().copy()
f()
after = x.op.get_value()
assert np.allclose(after, before + 1)
def make_updater_fc():
X = cgt.matrix("X", fixed_shape=(None, 28 * 28))
y = cgt.vector("y", dtype="i8")
stepsize = cgt.scalar("stepsize")
loss = build_fc_return_loss(X, y)
params = nn.get_parameters(loss)
gparams = cgt.grad(loss, params)
updates = [(p, p - stepsize * gp) for (p, gp) in zip(params, gparams)]
return cgt.function([X, y, stepsize], loss, updates=updates)
def main(num_epochs=NUM_EPOCHS):
#cgt.set_precision('half')
print("Building network ...")
# Recurrent layers expect input of shape
# (batch size, max sequence length, number of features)
X = cgt.tensor3(name='X', fixed_shape=(N_BATCH, MAX_LENGTH, 2))
l_forward = nnbuilder.recurrentLayer(nn_input=X, num_units=N_HIDDEN)
l_backward = nnbuilder.recurrentLayer(nn_input=X, num_units=N_HIDDEN, backwards=True)
#l_forward = nnbuilder.LSTMLayer(nn_input=X, num_units=N_HIDDEN, activation=cgt.sigmoid)
#l_backward = nnbuilder.LSTMLayer(nn_input=X, num_units=N_HIDDEN, activation=cgt.sigmoid, backwards=True)
#l_forward = nnbuilder.GRULayer(nn_input=X, num_units=N_HIDDEN, activation=nn.rectify)
#l_backward = nnbuilder.GRULayer(nn_input=X, num_units=N_HIDDEN, activation=nn.rectify, backwards=True)
l_forward_slice = l_forward[:, MAX_LENGTH-1, :] # Take the last element in the forward slice time dimension
l_backward_slice = l_backward[:, 0, :] # And the first element in the backward slice time dimension
l_sum = cgt.concatenate([l_forward_slice, l_backward_slice], axis=1)
l_out = nnbuilder.denseLayer(l_sum, num_units=1, activation=cgt.tanh)
target_values = cgt.vector('target_output')
predicted_values = l_out[:, 0] # For this task we only need the last value
cost = cgt.mean((predicted_values - target_values)**2)
# Compute SGD updates for training
print("Computing updates ...")
updates = nn.rmsprop(cost, nn.get_parameters(l_out), LEARNING_RATE)
#updates = nn.nesterov_momentum(cost, nn.get_parameters(l_out), 0.05)
# cgt functions for training and computing cost
print("Compiling functions ...")
train = cgt.function([X, target_values], cost, updates=updates)
compute_cost = cgt.function([X, target_values], cost)
# We'll use this "validation set" to periodically check progress
X_val, y_val, mask_val = gen_data()
print("Training ...")
time_start = time.time()
try:
for epoch in range(num_epochs):
for _ in range(EPOCH_SIZE):
X, y, m = gen_data()
train(X, y)
cost_val = compute_cost(X_val, y_val)
print("Epoch {} validation cost = {}".format(epoch+1, cost_val))
print ('Epoch took ' + str(time.time() - time_start))
time_start = time.time()
except KeyboardInterrupt:
pass
def main():
print("Loading data...")
X = cgt.matrix("X", fixed_shape=(None, 28*28))
y = cgt.vector("y", dtype='i8')
model = build_model(X, 0.0)
loss = -cgt.mean(categorical.loglik(y, model))
updates = nn.rmsprop(loss, nn.get_parameters(loss), 0.01)
train = cgt.function(inputs=[X, y], outputs=[], updates=updates)
y_nodrop = cgt.argmax(model, axis=1)
cost_nodrop = -cgt.mean(categorical.loglik(y, model))
err_nodrop = cgt.cast(cgt.not_equal(y_nodrop, y), cgt.floatX).mean()
computeloss = cgt.function(inputs=[X, y], outputs=[err_nodrop, cost_nodrop])
batch_size=128
Xdata, ydata = load_data()
Xtrain = Xdata[0:60000]
ytrain = ydata[0:60000]
Xtest = Xdata[60000:70000]
ytest = ydata[60000:70000]
sortinds = np.random.permutation(60000)
Xtrain = Xtrain[sortinds]
ytrain = ytrain[sortinds]
print fmt_row(10, ["Epoch","Train NLL","Train Err","Test NLL","Test Err","Epoch Time"])
for i_epoch in xrange(3):
tstart = time.time()
for start in xrange(0, Xtrain.shape[0], batch_size):
end = start+batch_size
train(Xtrain[start:end], ytrain[start:end])
elapsed = time.time() - tstart
trainerr, trainloss = computeloss(Xtrain[:len(Xtest)], ytrain[:len(Xtest)])
testerr, testloss = computeloss(Xtest, ytest)
print fmt_row(10, [i_epoch, trainloss, trainerr, testloss, testerr, elapsed])
nnbuilder.save_weights(model, 'mnist')
def test_multi_output():
for x in (cgt.scalar('x'), cgt.vector('x'), cgt.matrix('x')):
for cls in (SinCos, SinCos2):
y, z = core.unpack(core.Result(cls(), [x]))
xnum = np.ones((3, ) * x.ndim, cgt.floatX)
correct = (np.sin(xnum), np.cos(xnum))
yznum = cgt.numeric_eval([y, z], {x: xnum})
np.testing.assert_allclose(yznum, correct)
f = cgt.function([x], [y, z])
np.testing.assert_allclose(f(xnum), correct)
def __init__(self, num_features=None, num_hidden=100):
stepsize = 0.01
# with shape (batchsize, ncols)
X = cgt.matrix("X", fixed_shape=(1, num_features))
# y: a symbolic variable representing the rewards, which are integers
y = cgt.scalar("y", dtype='float64')
hid1 = nn.rectify(
nn.Affine(num_features, num_hidden, weight_init=nn.IIDGaussian(std=.1), bias_init=nn.Constant(1))(X)
)
# One final fully-connected layer, and then a linear activation output for reward
output = nn.Affine(num_hidden, 1, weight_init=nn.IIDGaussian(std=.1), bias_init=nn.Constant(1))(hid1)
abs_deviation = cgt.abs(output - y).mean()
params = nn.get_parameters(abs_deviation)
gparams = cgt.grad(abs_deviation, params)
updates = [(p, p-stepsize*gp) for (p, gp) in zip(params, gparams)]
self.predictor = cgt.function([X], output)
self.updater = cgt.function([X, y], abs_deviation, updates=updates)
def test_shape_err():
try:
with CaptureStderr() as s:
with cgt.scoped_update_config(debug=True):
x = cgt.vector()
y = cgt.vector()
f = cgt.function([x,y],x+y)
f(np.zeros(3),np.zeros(4))
except Exception as e:
assert "f = cgt.function([x,y],x+y)" in s.getvalue()
def CGT_vLJ_Optimize(x):
N = len(x)
#cgt.set_precision('double')
xt = cgt.vector('xt')
vLJt = 0
for j in range(1,N):
for i in range(j):
rho = ((xt[i*D:i*D+D] - xt[j*D:j*D+D])**2).sum()
vLJt += rho**(-6.0)-(rho**(-3.0))
f = cgt.function([xt],4*vLJt)
dvLJc = cgt.grad(4*vLJt, xt)
df = cgt.function([xt],dvLJc)
CGT_BFGSres = optimize.minimize(f, np.ravel(x), \
method='L-BFGS-B', \
jac = df, \
options={'disp': False})
return np.reshape(CGT_BFGSres.x, (N,D))
def make_updater_convnet():
X = cgt.tensor4("X", fixed_shape=(None, 1, 28, 28)) # so shapes can be inferred
y = cgt.vector("y", dtype="i8")
stepsize = cgt.scalar("stepsize")
loss = build_convnet_return_loss(X, y)
params = nn.get_parameters(loss)
gparams = cgt.grad(loss, params)
updates = [(p, p - stepsize * gp) for (p, gp) in zip(params, gparams)]
return cgt.function([X, y, stepsize], loss, updates=updates)
def make_funcs(config, dbg_out=None):
params, Xs, Ys, C_0, H_0, C_T, H_T, C_1, H_1 = lstm_network(
config['rnn_steps'], config['num_inputs'], config['num_outputs'],
config['num_units'], config['num_mems'])
# basic
size_batch = Xs[0].shape[0]
dY = Ys[0].shape[-1]
Ys_gt = [
cgt.matrix(fixed_shape=(size_batch, dY), name='Y%d' % t)
for t in range(len(Ys))
]
Ys_var = [cgt.tensor3(fixed_shape=(size_batch, dY, dY)) for _ in Ys]
net_inputs, net_outputs = Xs + C_0 + H_0 + Ys_var, Ys + C_T + H_T
# calculate loss
loss_vec = []
for i in range(len(Ys)):
# if i == 0: continue
_l = dist.gaussian.logprob(Ys_gt[i], Ys[i], Ys_var[i])
loss_vec.append(_l)
loss_vec = cgt.add_multi(loss_vec)
if config['weight_decay'] > 0.:
params_flat = cgt.concatenate([p.flatten() for p in params])
loss_param = config['weight_decay'] * cgt.sum(params_flat**2)
loss_vec -= loss_param # / size_batch
loss = cgt.sum(loss_vec) / config['rnn_steps'] / size_batch
grad = cgt.grad(loss, params)
# functions
def f_init(size_batch):
c_0, h_0 = [], []
for _n_m in config['num_mems']:
if _n_m > 0:
c_0.append(np.zeros((size_batch, _n_m)))
h_0.append(np.zeros((size_batch, _n_m)))
return c_0, h_0
f_step = cgt.function([Xs[0]] + C_0 + H_0, [Ys[0]] + C_1 + H_1)
f_loss = cgt.function(net_inputs + Ys_gt, loss)
f_grad = cgt.function(net_inputs + Ys_gt, grad)
f_surr = cgt.function(net_inputs + Ys_gt, [loss] + net_outputs + grad)
return params, f_step, f_loss, f_grad, f_init, f_surr
def runTest(self):
f1 = cgt.function1([], ())
assert f1() == ()
x = cgt.vector()
xval = np.random.randn(1)
f2 = cgt.function([x], [(x,x),(x,),()])
ytrue = [(xval,xval),(xval,),()]
y = f2(xval)
assert y==ytrue
def test_scalar_input():
x = cgt.scalar()
f = cgt.function([x], x**2)
xval = 2
yval = 4
assert np.allclose(f(2), 4)
assert np.allclose(f(2.0), 4)
assert np.allclose(f(np.array(2)), 4)
assert np.allclose(f(np.array(2.0)), 4)
assert np.allclose(f(np.array([2])[0]), 4)
assert np.allclose(f(np.array([2.0])[0]), 4)
def make_updater_convnet():
X = cgt.tensor4("X", fixed_shape=(None, 1, 28,
28)) # so shapes can be inferred
y = cgt.vector("y", dtype='i8')
stepsize = cgt.scalar("stepsize")
loss = build_convnet_return_loss(X, y)
params = nn.get_parameters(loss)
gparams = cgt.grad(loss, params)
updates = [(p, p - stepsize * gp) for (p, gp) in zip(params, gparams)]
return cgt.function([X, y, stepsize], loss, updates=updates)
def CGT_dvLJ(x):
N = len(x)
xt = cgt.vector('xt')
vLJt = 0
for j in range(1,N):
for i in range(j):
rho = ((xt[i*D:i*D+D] - xt[j*D:j*D+D])**2).sum()
vLJt += rho**(-6.0)-(rho**(-3.0))
dvLJc = cgt.grad(4*vLJt, xt)
df = cgt.function([xt],dvLJc)
return df(np.ravel(x))
def make_funcs(opt, ntm, total_time, loss_timesteps):
x_tbk = cgt.tensor3("x", fixed_shape=(total_time, opt.b, opt.k))
y_tbp = cgt.tensor3("y", fixed_shape=(total_time, opt.b, opt.p))
loss_timesteps = set(loss_timesteps)
initial_states = make_ntm_initial_states(opt)
params = ntm.get_parameters() + get_parameters(initial_states)
# params = ntm.get_parameters()
lossCE = 0
loss01 = 0
state_arrs = initial_states
for t in xrange(total_time):
tmp = ntm([x_tbk[t]] + state_arrs)
raw_pred = tmp[0]
state_arrs = tmp[1:4]
if t in loss_timesteps:
p_pred = cgt.sigmoid(raw_pred)
ce = bernoulli_crossentropy(
y_tbp[t],
p_pred).sum() # cross-entropy of bernoulli distribution
lossCE = lossCE + ce
loss01 = loss01 + cgt.cast(cgt.equal(y_tbp[t], round01(p_pred)),
cgt.floatX).sum()
lossCE = lossCE / (len(loss_timesteps) * opt.p * opt.b) / np.log(2)
loss01 = loss01 / (len(loss_timesteps) * opt.p * opt.b)
gradloss = cgt.grad(lossCE, params)
flatgrad = flatcat(gradloss)
f_loss = cgt.function([x_tbk, y_tbp], lossCE)
f_loss_and_grad = cgt.function([x_tbk, y_tbp], [lossCE, loss01, flatgrad])
print "number of nodes in computation graph:", core.count_nodes(
[lossCE, loss01, flatgrad])
return f_loss, f_loss_and_grad, params
def test_sleeps():
with cgt.scoped_update_config(parallel=True):
x = cgt.scalar('x')
y1 = sleepfor(x, .1)
y2 = sleepfor(x, .1)
z = y1 + y2
fpar = cgt.function([x], z)
tstart = time.time()
fpar(0)
elapsed = time.time() - tstart
assert elapsed < .11
def __init__(self, n_actions):
Serializable.__init__(self, n_actions)
cgt.set_precision('double')
n_in = 128
o_no = cgt.matrix("o_no", fixed_shape=(None, n_in))
a_n = cgt.vector("a_n", dtype='i8')
q_n = cgt.vector("q_n")
oldpdist_np = cgt.matrix("oldpdists")
h0 = (o_no - 128.0) / 128.0
nhid = 64
h1 = cgt.tanh(
nn.Affine(128, nhid, weight_init=nn.IIDGaussian(std=.1))(h0))
probs_na = nn.softmax(
nn.Affine(nhid, n_actions,
weight_init=nn.IIDGaussian(std=0.01))(h1))
logprobs_na = cgt.log(probs_na)
b = cgt.size(o_no, 0)
logps_n = logprobs_na[cgt.arange(b), a_n]
surr = (logps_n * q_n).mean()
kl = (oldpdist_np * cgt.log(oldpdist_np / probs_na)).sum(axis=1).mean()
params = nn.get_parameters(surr)
gradsurr = cgt.grad(surr, params)
flatgrad = cgt.concatenate([p.flatten() for p in gradsurr])
lam = cgt.scalar()
penobj = surr - lam * kl
self._f_grad_lagrangian = cgt.function(
[lam, oldpdist_np, o_no, a_n, q_n],
cgt.concatenate([p.flatten() for p in cgt.grad(penobj, params)]))
self.f_pdist = cgt.function([o_no], probs_na)
self.f_probs = cgt.function([o_no], probs_na)
self.f_surr_kl = cgt.function([oldpdist_np, o_no, a_n, q_n],
[surr, kl])
self.f_gradlogp = cgt.function([oldpdist_np, o_no, a_n, q_n], flatgrad)
self.pc = ParamCollection(params)
def test_cpu_pool():
with cgt.scoped_update_config(precision="quad", backend="native"):
print cgt.get_precision()
ci = get_compile_info()
np.random.seed(0)
x = cgt.tensor4("x", fixed_shape=(2, 3, 5, 7))
y = max_pool_2d(x, (4, 4), (0, 0), (1, 1))
xval = np.random.randn(2, 3, 5, 7)
hval = np.random.randn(*cgt.infer_shape(y))
h = cgt.constant(hval)
cost = (y * h).sum()
fcost = cgt.function([x], cost)
fgrad = cgt.function([x], cgt.grad(cost, [x])[0])
from cgt.numeric_diff import numeric_grad
gnum = numeric_grad(fcost, xval)
gana = fgrad(xval)
assert np.allclose(gnum, gana)
