Ejemplo n.º 1
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def _canonicalize_smiles(data, computeCoords=False, in_delimiter=' ', smilesColumn=0, nameColumn=1, titleLine=True,
                         sanitize=True, out_delimiter=' ', nameHeader='Name', includeHeader=True, isomericSmiles=False,
                         kekuleSmiles=False):
    return _getSMILESString(_parseSMILESData(data, computeCoords=computeCoords, delimiter=in_delimiter,
                                             smilesColumn=smilesColumn, nameColumn=nameColumn, titleLine=titleLine,
                                             sanitize=sanitize),
                            delimiter=out_delimiter, nameHeader=nameHeader, includeHeader=includeHeader,
                            isomericSmiles=isomericSmiles, kekuleSmiles=kekuleSmiles)
Ejemplo n.º 2
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def _ctab2smiles(data,
                 sanitize=True,
                 removeHs=True,
                 strictParsing=True,
                 delimiter=' ',
                 nameHeader='Name',
                 includeHeader=True,
                 isomericSmiles=False,
                 kekuleSmiles=False):
    return _getSMILESString(_parseMolData(data,
                                          sanitize=sanitize,
                                          removeHs=removeHs,
                                          strictParsing=strictParsing),
                            delimiter=delimiter,
                            nameHeader=nameHeader,
                            includeHeader=includeHeader,
                            isomericSmiles=isomericSmiles,
                            kekuleSmiles=kekuleSmiles)
Ejemplo n.º 3
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def _canonicalize_smiles(data,
                         computeCoords=False,
                         in_delimiter=' ',
                         smilesColumn=0,
                         nameColumn=1,
                         titleLine=True,
                         sanitize=True,
                         out_delimiter=' ',
                         nameHeader='Name',
                         includeHeader=True,
                         isomericSmiles=False,
                         kekuleSmiles=False):
    return _getSMILESString(_parseSMILESData(data,
                                             computeCoords=computeCoords,
                                             delimiter=in_delimiter,
                                             smilesColumn=smilesColumn,
                                             nameColumn=nameColumn,
                                             titleLine=titleLine,
                                             sanitize=sanitize),
                            delimiter=out_delimiter,
                            nameHeader=nameHeader,
                            includeHeader=includeHeader,
                            isomericSmiles=isomericSmiles,
                            kekuleSmiles=kekuleSmiles)
Ejemplo n.º 4
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def _ctab2smiles(data, sanitize=True, removeHs=True, strictParsing=True, delimiter=' ', nameHeader='Name',
                 includeHeader=True, isomericSmiles=False, kekuleSmiles=False):
    return _getSMILESString(_parseMolData(data, sanitize=sanitize, removeHs=removeHs, strictParsing=strictParsing),
                            delimiter=delimiter, nameHeader=nameHeader, includeHeader=includeHeader,
                            isomericSmiles=isomericSmiles, kekuleSmiles=kekuleSmiles)
Ejemplo n.º 5
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def _ctab2smiles(data):
    return _getSMILESString(_parseMolData(data))
Ejemplo n.º 6
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def _canonicalize_smiles(data):
    return _getSMILESString(_parseSMILESData(data))
Ejemplo n.º 7
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def _ctab2smiles(data):
    return _getSMILESString(_parseMolData(data))
Ejemplo n.º 8
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def _canonicalize_smiles(data):
    return _getSMILESString(_parseSMILESData(data))