def test_determine_repeated_sequences_invalid_args(test_input, expectation):
"""Tests the behaviour of the determine_repeated function with unexpected inputs"""
with expectation:
rfm.determine_repeated(test_input)
def test_determine_repeated_incorrect_sequences(seq_input, expected):
"""Tests the behaviour of the translate_coding_sequences function with different sequence inputs"""
assert rfm.determine_repeated(seq_input) == expected
def test_determine_repeated_no_repeat_input(): assert rfm.determine_repeated(coding_sequences_no_repeats) == []
#### TEST remove_repeated #######################################################
coding_sequences_repeated = {1:"ATGGTCGAACGGTCGTCAAAGTCAGAGTACCCCGGGTACCAACTTACGGAGGATATTGCTTGCAGCTGCTAA",
2:"ATGGTCGAACGGTCGTCAAAGTCAGAGTACCCCGGGTACCAACTTACGGAGGATATTGCTTGCAGCTGCTAA",
3:"ATGTTCAAAGGCGAAAGAACAAAGGCTTACTGTGCGCAGAGGAACGCCCATTTTGCGGCTGGCGTCTATTGA"}
coding_sequences_no_repeats = {1:"ATGGTCGAACGGTCGTCAAAGTCAGAGTACCCCGGGTACCAACTTACGGAGGATATTGCTTGCAGCTGCTAA",
2:"ATGTTCAAAGGCGAAAGAACAAAGGCTTACTGTGCGCAGAGGAACGCCCATTTTGCGGCTGGCGTCTATTGA"}
proteins_repeated = rfm.translate_coding_sequences(coding_sequences_repeated)[0]
proteins_repeated2 = rfm.translate_coding_sequences(coding_sequences_repeated)[0]
proteins_no_repeat = rfm.translate_coding_sequences(coding_sequences_no_repeats)[0]
repeated_list = rfm.determine_repeated(coding_sequences_repeated)
@pytest.mark.parametrize(
"proteins, repeated_ids, expectation",
[(5,5, pytest.raises(TypeError))
])
def test_remove_repeated_sequences_invalid_args(proteins, repeated_ids, expectation):
"""Tests the behaviour of the remove_repeated function with unexpected inputs"""
with expectation:
rfm.remove_repeated(proteins, repeated_ids)
#@pytest.mark.parametrize(
# "proteins_incorrect, repeated_ids_incorrect, expected"
def test_determine_repeated_valid_input(): assert rfm.determine_repeated(coding_sequences_repeated) == [[1,2]]
def test_determine_repeated_empty_dict():
assert rfm.determine_repeated({}) == []
def test_determine_repeated_int_input():
with pytest.raises(AttributeError):
rfm.determine_repeated(5)
def test_determine_repeated_empty_str():
with pytest.raises(AttributeError):
rfm.determine_repeated("")
def test_determine_repeated_no_args():
with pytest.raises(TypeError):
rfm.determine_repeated()