def test_translate_coding_sequences_invalid_args(test_input, expectation):
"""Tests the behaviour of the translate_coding_sequences function with unexpected inputs"""
with expectation:
rfm.translate_coding_sequences(test_input)
def test_translate_coding_sequences_incorrect_sequences(seq_input, expected):
"""Tests the behaviour of the translate_coding_sequences function with different sequence inputs"""
assert rfm.translate_coding_sequences(seq_input) == expected
def test_translate_coding_sequences_untranslatable_input():
assert rfm.translate_coding_sequences({1:"AAAAAAAAAAAA"}) == [{}, {}, {}, {1: 'AAAAAAAAAAAA'}]
"""Tests the behaviour of the translate_coding_sequences function with different sequence inputs"""
assert rfm.determine_repeated(seq_input) == expected
############################################################################################
#### TEST remove_repeated #######################################################
coding_sequences_repeated = {1:"ATGGTCGAACGGTCGTCAAAGTCAGAGTACCCCGGGTACCAACTTACGGAGGATATTGCTTGCAGCTGCTAA",
2:"ATGGTCGAACGGTCGTCAAAGTCAGAGTACCCCGGGTACCAACTTACGGAGGATATTGCTTGCAGCTGCTAA",
3:"ATGTTCAAAGGCGAAAGAACAAAGGCTTACTGTGCGCAGAGGAACGCCCATTTTGCGGCTGGCGTCTATTGA"}
coding_sequences_no_repeats = {1:"ATGGTCGAACGGTCGTCAAAGTCAGAGTACCCCGGGTACCAACTTACGGAGGATATTGCTTGCAGCTGCTAA",
2:"ATGTTCAAAGGCGAAAGAACAAAGGCTTACTGTGCGCAGAGGAACGCCCATTTTGCGGCTGGCGTCTATTGA"}
proteins_repeated = rfm.translate_coding_sequences(coding_sequences_repeated)[0]
proteins_repeated2 = rfm.translate_coding_sequences(coding_sequences_repeated)[0]
proteins_no_repeat = rfm.translate_coding_sequences(coding_sequences_no_repeats)[0]
repeated_list = rfm.determine_repeated(coding_sequences_repeated)
@pytest.mark.parametrize(
"proteins, repeated_ids, expectation",
[(5,5, pytest.raises(TypeError))
])
def test_remove_repeated_sequences_invalid_args(proteins, repeated_ids, expectation):
def test_translate_coding_sequences_ambiguous_input():
assert rfm.translate_coding_sequences({1:"ATGNGTCAATAA"}) == [{}, {}, {1: 'ATGNGTCAATAA'}, {}]
def test_translate_coding_sequences_valid_input():
assert rfm.translate_coding_sequences({1:"ATGGGTCAATAA"}) == [{1: 'MGQ'}, {1: 'sense'}, {}, {}]
def test_translate_coding_sequences_empty_str():
with pytest.raises(AttributeError):
rfm.translate_coding_sequences("")
def test_translate_coding_sequences_int_input():
with pytest.raises(AttributeError):
rfm.translate_coding_sequences(5)
def test_translate_coding_sequences_no_args():
with pytest.raises(TypeError):
rfm.translate_coding_sequences()