def doUI(self, parent):
self.scrFrame = Pmw.ScrolledFrame(self,
frame_relief='sunken',
horizflex='expand')
self.scrFrame.grid(row=0,
column=0,
padx=5,
columnspan=2,
sticky='nsew')
self.rowFrame = self.scrFrame.component('frame')
self.addB = Tkinter.Button(self, command=self._addCB)
plus_image = chimage.get("plus.gif", self.addB)
self.addB.configure(image=plus_image)
self.addB._image = plus_image
help.register(self.addB,
balloon="Add a row below currently selected row")
self.addB.grid(row=1, column=0, pady=5, padx=0, sticky='n')
self.delB = Tkinter.Button(self, command=self._delCB)
minus_image = chimage.get("minus.gif", self.delB)
self.delB.configure(image=minus_image)
self.delB._image = minus_image
help.register(self.delB, balloon="Delete the currently selected row")
self.delB.grid(row=1, column=1, pady=5, padx=0, sticky='nw')
self.delB.configure(state="disabled")
self.rowconfigure(0, weight=10)
self.rowconfigure(1, weight=0)
self.columnconfigure(1, weight=10)
def doUI(self, parent):
self.scrFrame = Pmw.ScrolledFrame(self, frame_relief='sunken',
horizflex='expand')
self.scrFrame.grid(row=0, column=0,padx=5, columnspan=2, sticky='nsew')
self.rowFrame = self.scrFrame.component('frame')
self.addB = Tkinter.Button(self, command=self._addCB)
plus_image = chimage.get("plus.gif",self.addB)
self.addB.configure(image=plus_image)
self.addB._image = plus_image
help.register(self.addB, balloon="Add a row below currently selected row")
self.addB.grid(row=1,column=0,pady=5,padx=0,sticky='n')
self.delB = Tkinter.Button(self, command=self._delCB)
minus_image = chimage.get("minus.gif",self.delB)
self.delB.configure(image=minus_image)
self.delB._image = minus_image
help.register(self.delB, balloon="Delete the currently selected row")
self.delB.grid(row=1,column=1,pady=5,padx=0,sticky='nw')
self.delB.configure(state="disabled")
self.rowconfigure(0, weight=10)
self.rowconfigure(1, weight=0)
self.columnconfigure(1, weight=10)
def _makeActionGroup(self, parent):
from prefs import prefs
from chimera import chimage
import Tkinter, Pmw
d = prefs.get("treatment", {})
self.treatmentShow = d.get("show", 0)
selAtoms = d.get("selectAtoms", 0)
selModels = d.get("selectModels", 0)
hideOthers = d.get("hideOthers", 1)
self.rightArrow = chimage.get("rightarrow.png", parent)
self.downArrow = chimage.get("downarrow.png", parent)
if self.treatmentShow:
relief = "groove"
image = self.downArrow
else:
relief = "flat"
image = self.rightArrow
self.treatmentGroup = Pmw.Group(parent,
collapsedsize=0,
tagindent=0,
ring_relief=relief,
tag_pyclass=Tkinter.Button,
tag_text=" Treatment of Chosen Models",
tag_relief="flat",
tag_compound="left",
tag_image=image,
tag_command=self._treatmentCB)
if not self.treatmentShow:
self.treatmentGroup.collapse()
self.treatmentGroup.pack(side="top", fill="x", padx=3)
interior = self.treatmentGroup.interior()
self.treatmentSelAtom = Tkinter.IntVar(parent)
self.treatmentSelAtom.set(selAtoms)
b = Tkinter.Checkbutton(interior,
text="Select atoms",
onvalue=1, offvalue=0,
variable=self.treatmentSelAtom,
command=self._treatmentChangedCB)
b.pack(side="left")
self.treatmentSelModel = Tkinter.IntVar(parent)
self.treatmentSelModel.set(selModels)
b = Tkinter.Checkbutton(interior,
text="Choose in Model Panel",
onvalue=1, offvalue=0,
variable=self.treatmentSelModel,
command=self._treatmentChangedCB)
b.pack(side="left")
self.treatmentHideOthers = Tkinter.IntVar(parent)
self.treatmentHideOthers.set(hideOthers)
b = Tkinter.Checkbutton(interior,
text="Hide others",
onvalue=1, offvalue=0,
variable=self.treatmentHideOthers,
command=self._treatmentChangedCB)
b.pack(side="left")
def fillInUI(self, parent):
#
# Construct user interface
#
self.modelVars = {}
# Find images
top = parent.winfo_toplevel()
dir = os.path.dirname(__file__)
icon = os.path.join(dir, 'move.tiff')
self.moveIcon = chimage.get(icon, top)
icon = os.path.join(dir, 'zoom.tiff')
self.zoomIcon = chimage.get(icon, top)
icon = os.path.join(dir, 'reset.tiff')
self.resetIcon = chimage.get(icon, top)
# Label rows
for n in range(len(self.refModels)):
parent.rowconfigure(n + 1, weight=1)
m = self.refModels[n]
lf = Tkinter.Frame(parent, relief=Tkinter.GROOVE, bd=2)
lf.grid(row=n + 1, column=0, sticky='nsew')
self._addRefConformer(lf, m)
# Label columns
for n in range(len(self.altModels)):
parent.columnconfigure(n + 1, weight=1)
m = self.altModels[n]
lf = Tkinter.Frame(parent, relief=Tkinter.GROOVE, bd=2)
lf.grid(row=0, column=n + 1, sticky='nsew')
self._addAltConformer(lf, m)
# Add table entries
# Each column comprises a set of radio buttons.
# This design is selected because each conformer
# in the alternative ensemble can only be matched
# to a single conformer in the reference ensemble.
self.matchVars = {}
for a in range(len(self.altModels)):
alt = self.altModels[a]
var = Tkinter.IntVar(parent)
var.set(-1)
self.matchVars[alt] = var
for r in range(len(self.refModels)):
ref = self.refModels[r]
m = chimera.match.Match(self.atomDict[ref],
self.atomDict[alt])
b = Tkinter.Radiobutton(parent,
relief=Tkinter.SUNKEN,
text='%.3f' % m.rms,
value=r,
variable=var,
command=lambda s=self, m=alt:
s.matchModel(m))
b.grid(column=a + 1, row=r + 1, sticky='nsew')
def fillInUI(self, parent):
#
# Construct user interface
#
self.modelVars = {}
# Find images
top = parent.winfo_toplevel()
dir = os.path.dirname(__file__)
icon = os.path.join(dir, 'move.tiff')
self.moveIcon = chimage.get(icon, top)
icon = os.path.join(dir, 'zoom.tiff')
self.zoomIcon = chimage.get(icon, top)
icon = os.path.join(dir, 'reset.tiff')
self.resetIcon = chimage.get(icon, top)
# Label rows
for n in range(len(self.refModels)):
parent.rowconfigure(n + 1, weight=1)
m = self.refModels[n]
lf = Tkinter.Frame(parent, relief=Tkinter.GROOVE, bd=2)
lf.grid(row=n + 1, column=0, sticky='nsew')
self._addRefConformer(lf, m)
# Label columns
for n in range(len(self.altModels)):
parent.columnconfigure(n + 1, weight=1)
m = self.altModels[n]
lf = Tkinter.Frame(parent, relief=Tkinter.GROOVE, bd=2)
lf.grid(row=0, column=n + 1, sticky='nsew')
self._addAltConformer(lf, m)
# Add table entries
# Each column comprises a set of radio buttons.
# This design is selected because each conformer
# in the alternative ensemble can only be matched
# to a single conformer in the reference ensemble.
self.matchVars = {}
for a in range(len(self.altModels)):
alt = self.altModels[a]
var = Tkinter.IntVar(parent)
var.set(-1)
self.matchVars[alt] = var
for r in range(len(self.refModels)):
ref = self.refModels[r]
m = chimera.match.Match(self.atomDict[ref], self.atomDict[alt])
b = Tkinter.Radiobutton(
parent,
relief=Tkinter.SUNKEN,
text='%.3f' % m.rms,
value=r,
variable=var,
command=lambda s=self, m=alt: s.matchModel(m))
b.grid(column=a + 1, row=r + 1, sticky='nsew')
def populateListFrame(self):
self.panelsLabel = Tkinter.Label(self.pListFrame, text="Panels", font="helvetica -14 bold")
self.panelsLabel.grid(row=0, column=0, columnspan=4, sticky='w')
self.panelList = Pmw.ScrolledListBox(self.pListFrame,
labelmargin=10,
listbox_height=5, listbox_width=20,
listbox_selectmode=Tkinter.SINGLE,
selectioncommand=self.refreshPanelCB,
listbox_exportselection=False)
#dblclickcommand=self.showPanelEntry)
self.panelList.grid(row=1, column=0, padx=10, columnspan=4, sticky='nsew')
this_dir = os.path.split(Demo.__file__)[0]
self.upButton = Tkinter.Button(self.pListFrame, command=self.panelUp)
up_image=chimage.get("arrow_up.gif", self.upButton)#text="/\\")
self.upButton.configure(image=up_image, state="disabled")
self.upButton._image = up_image
help.register(self.upButton, balloon="Move currently selected panel up")
self.upButton.grid(row=2,column=0,sticky='s')
self.downButton=Tkinter.Button(self.pListFrame, command=self.panelDown)
down_image=chimage.get("arrow_down.gif", self.downButton)#text="/\\")
self.downButton.configure(image=down_image, state="disabled")
self.downButton._image = down_image
help.register(self.downButton, balloon="Move currently selected panel down")
self.downButton.grid(row=3,column=0,sticky='n')
self.deleteButton = Tkinter.Button(self.pListFrame, text="Delete", command=self.deletePanel, state="disabled")
help.register(self.deleteButton, balloon="Delete currently selected panel")
self.deleteButton.grid(row=2,column=1,rowspan=2)
self.newButton = Tkinter.Button(self.pListFrame, text="New", command=self.newPanelCB)
help.register(self.newButton, balloon="Add a new panel")
self.newButton.grid(row=2, column=2,rowspan=2)
#self.editGlobalB = Tkinter.Button(self.pListFrame, text="Edit Demo Options",
# command=self.editGlobalCB)
#help.register(self.editGlobalB, balloon="Edit global options for Demo")
#self.editGlobalB.grid(row=4,column=0,columnspan=4, sticky='w')
self.pListFrame.rowconfigure(0, weight=1)
self.pListFrame.rowconfigure(1, weight=20)
self.pListFrame.rowconfigure(2, weight=1)
self.pListFrame.rowconfigure(3, weight=1)
self.pListFrame.rowconfigure(4, weight=1)
def fillInUI(self, master):
from chimera import chimage
import Tkinter
import os.path
thisfile = os.path.abspath(__file__)
thisdir = os.path.split(thisfile)[0]
icon = chimage.get(os.path.join(thisdir, 'chimera_icon_small.png'),
master)
l = Tkinter.Label(master, image=icon, borderwidth=10)
l.__image = icon
l.pack(side='left')
lab = Tkinter.Label(
master,
borderwidth=10,
justify='left',
text="Demos listed in the Tools menu were made using\n"
"Chimera's Demo feature, which enables the easy\n"
"creation and replay of custom multistep demos.\n"
"Each step is comprised of a set of operations performed\n"
"in Chimera, and an accompanying block of explanatory text.\n"
"\n"
"For more information on how to create demos, click the Help button.\n"
)
lab.pack(side='right')
def __init__(self, box_changed_cb):
self.box_model = Box_Model()
self.box_changed_cb = box_changed_cb
self.ijk_in = None # Box coordinates
self.ijk_out = None
self.mode_name = 'volume subregion' # For mouse modes panel
self.bound_button = None
self.drag_mode = None
self.rotation_handler = None
callbacks = (self.mouse_down_cb, self.mouse_drag_cb, self.mouse_up_cb)
icon_file = 'selectregion.gif'
if icon_file:
import os.path
icon_path = os.path.join(os.path.dirname(__file__), icon_file)
from PIL import Image
image = Image.open(icon_path)
from chimera import chimage
from chimera import tkgui
icon = chimage.get(image, tkgui.app)
else:
icon = None
from chimera import mousemodes
mousemodes.addFunction(self.mode_name, callbacks, icon)
def mouse_mode_icon(self, filename):
import os.path
icon_path = os.path.join(os.path.dirname(__file__), filename)
from PIL import Image
image = Image.open(icon_path)
from chimera import chimage, tkgui
icon = chimage.get(image, tkgui.app)
return icon
def __init__(self):
import os.path
myDir, junk = os.path.split(__file__)
addFunction('place text', (self._pickLabel, self._moveLabel,
None), icon=chimage.get(Image.open(os.path.join(myDir,
'ilabel.png')), tkgui.app))
addFunction('place key', (self._startOrGrabKey,
self._sizeOrMoveKey, None), icon=chimage.get(
Image.open(os.path.join(myDir, 'key.png')), tkgui.app))
import Ilabel
if not Ilabel._ilabelModel:
Ilabel.IlabelModel()
self.model = Ilabel._ilabelModel
ModelessDialog.__init__(self)
self._sessionHandlerID = chimera.triggers.addHandler(
SAVE_SESSION, self._saveSession, None)
self._closeHandlerID = chimera.triggers.addHandler(
CLOSE_SESSION, self.destroy, None)
self._beginRestoreHandlerID = chimera.triggers.addHandler(
BEGIN_RESTORE_SESSION, self.destroy, None)
def __init__(self, master, automultilineHeaders=True, menuInfo=None,
allowUserSorting=True):
self.tixTable = None
self.data = None
self.columns = []
self.sorting = None
self.allowUserSorting = allowUserSorting
self.automultilineHeaders = automultilineHeaders
self.menuInfo = menuInfo
Tkinter.Frame.__init__(self, master)
try:
from chimera import chimage
self.upArrow = chimage.get("uparrow.png", self)
self.downArrow = chimage.get("downarrow.png", self)
except ImportError:
self.upArrow = "^"
self.downArrow = "v"
self._sortCache = None
self._lastBrowseSel = None
self._highlighted = []
self._widgetData = {}
def __init__(self):
import os.path
myDir, junk = os.path.split(__file__)
addFunction('place text', (self._pickLabel, self._moveLabel, None),
icon=chimage.get(
Image.open(os.path.join(myDir, 'ilabel.png')),
tkgui.app))
addFunction('place key',
(self._startOrGrabKey, self._sizeOrMoveKey, None),
icon=chimage.get(
Image.open(os.path.join(myDir, 'key.png')), tkgui.app))
import Ilabel
if not Ilabel._ilabelModel:
Ilabel.IlabelModel()
self.model = Ilabel._ilabelModel
ModelessDialog.__init__(self)
self._sessionHandlerID = chimera.triggers.addHandler(
SAVE_SESSION, self._saveSession, None)
self._closeHandlerID = chimera.triggers.addHandler(
CLOSE_SESSION, self.destroy, None)
self._beginRestoreHandlerID = chimera.triggers.addHandler(
BEGIN_RESTORE_SESSION, self.destroy, None)
def __init__(self,
master,
automultilineHeaders=True,
menuInfo=None,
allowUserSorting=True):
self.tixTable = None
self.data = None
self.columns = []
self.sorting = None
self.allowUserSorting = allowUserSorting
self.automultilineHeaders = automultilineHeaders
self.menuInfo = menuInfo
Tkinter.Frame.__init__(self, master)
try:
from chimera import chimage
self.upArrow = chimage.get("uparrow.png", self)
self.downArrow = chimage.get("downarrow.png", self)
except ImportError:
self.upArrow = "^"
self.downArrow = "v"
self._sortCache = None
self._lastBrowseSel = None
self._highlighted = []
self._widgetData = {}
def addImg(self):
if self.img_bg_color:
try:
self.imgFrame.configure(background=self.img_bg_color)
except Tkinter.TclError:
pass
from chimera import chimage
self._wizImage = chimage.get(self.img_src, self.imgFrame)
self._wizLabel = Tkinter.Label(self.imgFrame, image=self._wizImage, borderwidth=0)
self._wizLabel.__image = self._wizImage
self._wizLabel.pack(side='left', anchor='n')
def addImg(self):
if self.img_bg_color:
try:
self.imgFrame.configure(background=self.img_bg_color)
except Tkinter.TclError:
pass
from chimera import chimage
self._wizImage = chimage.get(self.img_src, self.imgFrame)
self._wizLabel = Tkinter.Label(self.imgFrame,
image=self._wizImage,
borderwidth=0)
self._wizLabel.__image = self._wizImage
self._wizLabel.pack(side='left', anchor='n')
def fillInUI(self, master):
from chimera import chimage
import Tkinter
import os.path
thisfile = os.path.abspath(__file__)
thisdir = os.path.split(thisfile)[0]
icon = chimage.get( os.path.join(thisdir, 'chimera_icon_small.png'), master)
l = Tkinter.Label(master, image=icon, borderwidth=10)
l.__image = icon
l.pack(side='left')
lab = Tkinter.Label(master, borderwidth=10, justify='left',
text=
"Demos listed in the Tools menu were made using\n"
"Chimera's Demo feature, which enables the easy\n"
"creation and replay of custom multistep demos.\n"
"Each step is comprised of a set of operations performed\n"
"in Chimera, and an accompanying block of explanatory text.\n"
"\n"
"For more information on how to create demos, click the Help button.\n"
)
lab.pack(side='right')
def fillInUI(self, parent):
#recCtrlFrame = Tkinter.Frame(parent)
#recCtrlFrame.grid(row=0,column=0,columnspan=2, sticky='w', pady=10, padx=10)
##--------Record button-----------##
self.recButton = Tkinter.Button(parent, text="Record", command=self.startRecording)
#self.rec_img = chimage.get(os.path.join(self.this_dir, "record.png"), self.recButton)
#self.pause_img = chimage.get(os.path.join(self.this_dir, "pause.png"), self.recButton)
#self.recButton.configure(image=self.rec_img, relief='flat')
#self.recButton._rec_image = self.rec_img
#self.recButton._pause_image = self.pause_img
help.register(self.recButton, balloon="Start capturing frames from the graphics window")
self.recButton.grid(row=0,column=0, sticky='w', pady=5, padx=10)
## ---------------------------------
##--------Encode button-----------##
self.encButton = Tkinter.Button(parent, text="Make movie", command = self.startEncoding)
#self.movie_img = chimage.get(os.path.join(self.this_dir, "movie.png"), self.encButton)
#self.abort_img = chimage.get(os.path.join(self.this_dir, "abort_movie.png"), self.encButton)
#self.encButton.configure(image=self.movie_img, relief='flat')
#self.encButton._movie_img = self.movie_img
#self.encButton._abort_img = self.abort_img
help.register(self.encButton, balloon="Make a movie from currently captured frames")
self.encButton.grid(row=0,column=1, sticky='w')
## can't encode yet - don't have any frames cached !
self.encButton.configure(state='disabled')
## ------------------------------------
##--------Reset button-----------##
self.clearButton = Tkinter.Button(parent,
text="Reset",
command=self.resetRecording)
help.register(self.clearButton, balloon="Clear all saved frames")
self.clearButton.configure(state='disabled')
self.clearButton.grid(row=1, column=0, sticky='w', pady=5, padx=10)
## ---------------------------------
## ------Reset after encode-------------
self.autoResetVar = Tkinter.IntVar(parent)
self.autoResetVar.set(1)
autoResetChB = Tkinter.Checkbutton(parent,
text="Reset after encode",
variable = self.autoResetVar,
command = self.resetModeCB
)
autoResetChB.grid(row=1,column=1, sticky='w')
## -------------------------------------
#-------Movie format---------------------------
self.movieFmtOption = MovieFmtTkOption(parent,
2, 'Output format',
default_format,
self.chooseFmtCB)
## ------------------------------------------------
## -------------Output path ------------------
outputFrame = Tkinter.Frame(parent)
from OpenSave import tildeExpand
initialfile = os.path.join(tildeExpand("~"), DEFAULT_OUTFILE)
from OpenSave import SaveModeless
class OutputPathDialog(SaveModeless):
default = 'Set Movie Path'
title = 'Select movie output file'
def SetMoviePath(self):
self.Save()
setattr(OutputPathDialog, OutputPathDialog.default,
OutputPathDialog.SetMoviePath) # Work around OpenSave bug
ofo = tkoptions.OutputFileOption(outputFrame,
0, 'Output file',
initialfile,
None,
balloon = 'Output file save location '
)
ofo.dialogType = OutputPathDialog
self.outFileOption = ofo
outputFrame.grid(row=3, column=0, columnspan=3, sticky='ew', pady=10)
outputFrame.columnconfigure(1, weight=1)
## -------------------------------------------
statsGroup = Pmw.Group(parent, tag_text="Status")
statsGroup.grid(row=0, column=2, rowspan=3, padx=20, sticky='nsew')
#statsGroup.configure(hull_width=1000)
self.frame_num_var = Tkinter.StringVar(parent)
self.time_left_var = Tkinter.StringVar(parent)
self.actionLabel = Tkinter.Label(statsGroup.interior(), text="Stopped")
numFramesLabel = Tkinter.Label(statsGroup.interior(),
text = "# Frames:")#,
frameResLabel = Tkinter.Label(statsGroup.interior(),
text = "Resolution:")#,
estLengthLabel = Tkinter.Label(statsGroup.interior(),
text = "Est. Length:")#,
#statsGroup.interior().rowconfigure(0,weight=1)
statsGroup.interior().columnconfigure(2,weight=1)
self.accum_frames_var = Tkinter.StringVar(parent)
self.accum_frames_var.set('0')
self.frame_res_var = Tkinter.StringVar(parent)
self.frame_res_var.set('%dx%d' % chimera.viewer.windowSize)
self.accum_secs_var = Tkinter.StringVar(parent)
self.accum_secs_var.set('0s.')
numFramesVal = Tkinter.Label(statsGroup.interior(),
textvariable = self.accum_frames_var)
frameResVal = Tkinter.Label(statsGroup.interior(),
textvariable = self.frame_res_var)
estLengthVal = Tkinter.Label(statsGroup.interior(),
textvariable = self.accum_secs_var)
self.actionLabel.grid(row=0,column=0, columnspan=2, pady=2, sticky='w')
numFramesLabel.grid(row=1,column=0, pady=2, sticky='w')
frameResLabel.grid(row=2, column=0, pady=2, sticky='w')
estLengthLabel.grid(row=3, column=0, pady=2, sticky='w')
numFramesVal.grid(row=1, column=1, padx=5, sticky='w')
frameResVal.grid(row=2, column=1, padx=5, sticky='w')
estLengthVal.grid(row=3, column=1, padx=5, sticky='w')
parent.columnconfigure(2, weight=1)
parent.columnconfigure(3, weight=2)
parent.rowconfigure(9, weight=1)
dummyFrame = Tkinter.Frame(parent, relief='groove', borderwidth=1)
Tkinter.Frame(dummyFrame).pack()
dummyFrame.grid(row=4,column=0,columnspan=3, pady=10, sticky='ew')
## -------------- Frame options -----------------------
frmOptChBFrame = Tkinter.Frame(parent, background="gray")
frmOptChBFrame.grid(row=5, column=0,columnspan=3, pady=5, sticky='ew')
frmOptChBFrame.columnconfigure(1, weight=1)
self.frmOptionsVar = Tkinter.IntVar(frmOptChBFrame)
frmOptionsChB = Tkinter.Checkbutton(frmOptChBFrame,
indicatoron=False,
selectcolor='',
background="gray",
offrelief='flat',
overrelief='flat',
text = "Options...",
relief='flat',
variable=self.frmOptionsVar,
command = self.showFrmOptionsCB)
r_arrow_img=chimage.get("rightarrow.png", frmOptionsChB)
frmOptionsChB.configure(image=r_arrow_img)
frmOptionsChB._image = r_arrow_img
d_arrow_img=chimage.get("downarrow.png", frmOptionsChB)
frmOptionsChB.configure(selectimage=d_arrow_img)
frmOptionsChB._selectimage = d_arrow_img
#frmOptionsChB.configure(relief='sunken')
#print frmOptionsChB.configure().keys()
frmOptionsChB.grid(row=0, column=0, sticky='w')
frmOptionsLabel = Tkinter.Label(frmOptChBFrame, text="Frame Options", background="gray")
frmOptionsLabel.grid(row=0,column=1, sticky='w', padx=5)
self.frmOptionsFrame = Tkinter.Frame(parent)
self.populateFrmOptionsFrame()
## ---------------------------------------------------
## --------------------- Movie options -----------------
movOptChBFrame = Tkinter.Frame(parent, background="gray")
movOptChBFrame.grid(row=7, column=0,columnspan=3, pady=5, sticky='ew')
movOptChBFrame.columnconfigure(1, weight=1)
self.movOptionsVar = Tkinter.IntVar(movOptChBFrame)
movOptionsChB = Tkinter.Checkbutton(movOptChBFrame,
indicatoron=False,
selectcolor='',
background="gray",
offrelief='flat',
overrelief='flat',
text = "Options...",
relief='flat',
variable=self.movOptionsVar,
command = self.showMovOptionsCB)
movOptionsChB.configure(image=r_arrow_img)
movOptionsChB._image = r_arrow_img
movOptionsChB.configure(selectimage=d_arrow_img)
movOptionsChB._selectimage = d_arrow_img
movOptionsChB.grid(row=0, column=0, sticky='w', pady=0)
movOptionsLabel = Tkinter.Label(movOptChBFrame, text="Movie Options", background="gray")
movOptionsLabel.grid(row=0,column=1, sticky='w', padx=5)
self.movOptionsFrame = Tkinter.Frame(parent)
self.populateMovOptionsFrame()
self.movOptionsFrame.columnconfigure(0, weight=1)
def fillInUI(self, parent):
import Pmw, Tkinter
from chimera import chimage
self.parent = parent
d = prefs.get("treatment", {})
self.treatmentShow = d.get("show", 0)
self.treatmentSelAtom = d.get("selectAtoms", 0)
self.treatmentSelAtomOf = d.get("selectAtomsOf", "all members")
self.treatmentSelModel = d.get("selectModels", 1)
self.treatmentSelModelOf = d.get("selectModelsOf", "all members")
self.treatmentColorModel = d.get("colorModels", 1)
self.treatmentColorModelOf = d.get("colorModelsOf", "all members")
self.rightArrow = chimage.get("rightarrow.png", parent)
self.downArrow = chimage.get("downarrow.png", parent)
if self.treatmentShow:
relief = "sunken"
image = self.downArrow
else:
relief = "flat"
image = self.rightArrow
self.treatmentGroup = Pmw.Group(parent,
collapsedsize=0,
tagindent=0,
ring_relief=relief,
tag_pyclass=Tkinter.Button,
tag_text=" Treatment of Chosen Clusters",
tag_relief="flat",
tag_compound="left",
tag_image=image,
tag_command=self._treatmentCB)
if not self.treatmentShow:
self.treatmentGroup.collapse()
self.treatmentGroup.pack(side="top", fill="x", padx=3)
self.treatmentSelAtomVar = Tkinter.IntVar(parent)
if self.treatmentSelAtom:
self.treatmentSelAtomVar.set(1)
else:
self.treatmentSelAtomVar.set(0)
f = Tkinter.Frame(self.treatmentGroup.interior())
f.pack(side="top", fill="x")
self.treatmentSelAtomButton = Tkinter.Checkbutton(f,
text=" Select atoms of",
onvalue=1, offvalue=0,
variable=self.treatmentSelAtomVar,
command=self._treatmentSelAtomCB)
self.treatmentSelAtomButton.pack(side="left")
self.treatmentSelAtomMenu = Pmw.OptionMenu(f,
items = ( "representatives",
"all members" ),
initialitem=self.treatmentSelAtomOf,
menubutton_pady=0,
command=self._treatmentSelAtomCB)
self.treatmentSelAtomMenu.pack(side="left")
self.treatmentColorModelVar = Tkinter.IntVar(parent)
if self.treatmentColorModel:
self.treatmentColorModelVar.set(1)
else:
self.treatmentColorModelVar.set(0)
f = Tkinter.Frame(self.treatmentGroup.interior())
f.pack(side="top", fill="x")
self.treatmentColorModelButton = Tkinter.Checkbutton(f,
text=" Color",
onvalue=1, offvalue=0,
variable=self.treatmentColorModelVar,
command=self._treatmentColorModelCB)
self.treatmentColorModelButton.pack(side="left")
self.treatmentColorModelMenu = Pmw.OptionMenu(f,
items = ( "representatives",
"all members" ),
initialitem=self.treatmentColorModelOf,
menubutton_pady=0,
command=self._treatmentColorModelCB)
self.treatmentColorModelMenu.pack(side="left")
self.treatmentSelModelVar = Tkinter.IntVar(parent)
if self.treatmentSelModel:
self.treatmentSelModelVar.set(1)
else:
self.treatmentSelModelVar.set(0)
f = Tkinter.Frame(self.treatmentGroup.interior())
f.pack(side="top", fill="x")
self.treatmentSelModelButton = Tkinter.Checkbutton(f,
text=" Choose",
onvalue=1, offvalue=0,
variable=self.treatmentSelModelVar,
command=self._treatmentSelModelCB)
self.treatmentSelModelButton.pack(side="left")
self.treatmentSelModelMenu = Pmw.OptionMenu(f,
items = ( "representatives",
"all members" ),
initialitem=self.treatmentSelModelOf,
menubutton_pady=0,
labelpos="e",
label_text=" in Model Panel",
command=self._treatmentSelModelCB)
self.treatmentSelModelMenu.pack(side="left")
height = min(len(self.nmrc.clusters), 10)
values = []
maxLength = 0
for id in range(len(self.nmrc.clusters)):
m = self.clusterInfo[id][0]
n = len(self.clusterInfo[id][1])
v = "%d (%d models, rep: %s)" % (id, n, m.oslIdent())
values.append(v)
if len(v) > maxLength:
maxLength = len(v)
self.listbox = Pmw.ScrolledListBox(self.parent,
listbox_selectmode="extended",
listbox_width=maxLength,
listbox_height=height,
selectioncommand=self._listboxSelect)
self.listbox.pack(fill="both", expand=True)
self.listbox.setlist(values)
def populateListFrame(self):
self.panelsLabel = Tkinter.Label(self.pListFrame,
text="Panels",
font="helvetica -14 bold")
self.panelsLabel.grid(row=0, column=0, columnspan=4, sticky='w')
self.panelList = Pmw.ScrolledListBox(
self.pListFrame,
labelmargin=10,
listbox_height=5,
listbox_width=20,
listbox_selectmode=Tkinter.SINGLE,
selectioncommand=self.refreshPanelCB,
listbox_exportselection=False)
#dblclickcommand=self.showPanelEntry)
self.panelList.grid(row=1,
column=0,
padx=10,
columnspan=4,
sticky='nsew')
this_dir = os.path.split(Demo.__file__)[0]
self.upButton = Tkinter.Button(self.pListFrame, command=self.panelUp)
up_image = chimage.get("arrow_up.gif", self.upButton) #text="/\\")
self.upButton.configure(image=up_image, state="disabled")
self.upButton._image = up_image
help.register(self.upButton,
balloon="Move currently selected panel up")
self.upButton.grid(row=2, column=0, sticky='s')
self.downButton = Tkinter.Button(self.pListFrame,
command=self.panelDown)
down_image = chimage.get("arrow_down.gif",
self.downButton) #text="/\\")
self.downButton.configure(image=down_image, state="disabled")
self.downButton._image = down_image
help.register(self.downButton,
balloon="Move currently selected panel down")
self.downButton.grid(row=3, column=0, sticky='n')
self.deleteButton = Tkinter.Button(self.pListFrame,
text="Delete",
command=self.deletePanel,
state="disabled")
help.register(self.deleteButton,
balloon="Delete currently selected panel")
self.deleteButton.grid(row=2, column=1, rowspan=2)
self.newButton = Tkinter.Button(self.pListFrame,
text="New",
command=self.newPanelCB)
help.register(self.newButton, balloon="Add a new panel")
self.newButton.grid(row=2, column=2, rowspan=2)
#self.editGlobalB = Tkinter.Button(self.pListFrame, text="Edit Demo Options",
# command=self.editGlobalCB)
#help.register(self.editGlobalB, balloon="Edit global options for Demo")
#self.editGlobalB.grid(row=4,column=0,columnspan=4, sticky='w')
self.pListFrame.rowconfigure(0, weight=1)
self.pListFrame.rowconfigure(1, weight=20)
self.pListFrame.rowconfigure(2, weight=1)
self.pListFrame.rowconfigure(3, weight=1)
self.pListFrame.rowconfigure(4, weight=1)
def fillInUI(self, parent):
"""fillInUI(parnet)
"""
row = 0
# airs frame
af = Tkinter.Frame(parent, bd=2, padx=5, pady=10, relief='flat')
af.grid(row=row, column=0, sticky='ew')
# airs button
## afb = Tkinter.Button(af, text=" AIRS ",
## font=('Tempus Sans ITC', '36', 'bold'),
## background='black', foreground='white',
## activebackground='black',
## activeforeground='red',
## command=self.airs_info)
## afb.grid(row=0, column=0, sticky='ew')
# airs icon
from chimera import chimage
import os.path
thisfile = os.path.abspath(__file__)
thisdir = os.path.dirname(thisfile)
icon = chimage.get(os.path.join(thisdir, 'airs-small.gif'),parent)
row = row + 1
afi = Tkinter.Label(parent, image=icon, borderwidth=10)
afi.__image = icon
afi.grid(row=1, column=0, sticky='ew')
# notebooks frame
row = row + 1
nbf = Tkinter.Frame(parent)
nbf.grid(row=row, column=0, sticky='nw')
nb = Pmw.NoteBook(nbf)
nb.pack(expand=1, fill=Tkinter.BOTH)
self.notebook = nb
nb.add('filters', tab_text='Filters')
self.filtersFrame = nb.page('filters')
nb.add('docking', tab_text='Docking')
self.dockingFrame = nb.page('docking')
nb.add('analysis', tab_text='Analysis')
self.analysisFrame = nb.page('analysis')
nb.add('segment', tab_text = 'Segment')
self.segmentFrame = nb.page('segment')
nb.add('segmisc', tab_text = 'Segment Misc')
self.segmentMiscFrame = nb.page('segmisc')
nb.add('misc', tab_text='Misc.')
self.miscFrame = nb.page('misc')
# filters page
fp = Tkinter.Frame(self.filtersFrame)
fp.pack(side=Tkinter.TOP, fill=Tkinter.X, expand=1)
rowfp = 0
fpfilter = Tkinter.Button(fp, text='EMAN Filters',
command=self.filters_dialog)
fpfilter.grid(row=rowfp,column=0,sticky='nsew')
# segment page
sp = Tkinter.Frame(self.segmentFrame)
sp.pack(side=Tkinter.TOP, fill=Tkinter.X, expand=1)
rowsp = 0
spsimple = Tkinter.Button(sp, text='Segment Simple',
command=self.seg_simple_dialog)
spsimple.grid(row=rowsp,column=0,sticky='nsew')
rowsp = rowsp + 1
spmarker = Tkinter.Button(sp, text='Segment Markers',
command=self.seg_marker_dialog)
spmarker.grid(row=rowsp,column=0,sticky='nsew')
rowsp = rowsp + 1
spmask = Tkinter.Button(sp, text='Segment Mask',
command=self.seg_mask_dialog)
spmask.grid(row=rowsp,column=0,sticky='nsew')
rowsp = rowsp + 1
spread = Tkinter.Button(sp, text='Segment Read',
command=self.seg_read_dialog)
spread.grid(row=rowsp,column=0,sticky='nsew')
rowsp = rowsp + 1
spwrite = Tkinter.Button(sp, text='Segment Write',
command=self.seg_write_dialog)
spwrite.grid(row=rowsp,column=0,sticky='nsew')
# segment misc page
smp = Tkinter.Frame(self.segmentMiscFrame)
smp.pack(side=Tkinter.TOP, fill=Tkinter.X, expand=1)
rowsmp = 0
smpmeasurestick = Tkinter.Button(smp, text='Measure Stick',
command=self.measure_stick_dialog)
smpmeasurestick.grid(row=rowsmp,column=0,sticky='nsew')
rowsmp = rowsmp + 1
smptrackxf = Tkinter.Button(smp, text='Segment Track',
command=self.track_xform_dialog)
smptrackxf.grid(row=rowsmp,column=0,sticky='nsew')
# docking page
dp = Tkinter.Frame(self.dockingFrame)
dp.pack(side=Tkinter.TOP, fill=Tkinter.X, expand=1)
rowdp = 0
dpfh = Tkinter.Button(dp, text='Foldhunter',
command=self.foldhunter_dialog)
dpfh.grid(row=rowdp,column=0,sticky='nsew')
rowdp = rowdp + 1
dpffh = Tkinter.Button(dp, text='Flexible Foldhunter',
command=self.flex_foldhunter_dialog)
dpffh.grid(row=rowdp,column=0,sticky='nsew')
rowdp = rowdp + 1
dpmanual = Tkinter.Button(dp, text='Manual Docking',
command=self.dock_manual_dialog)
dpmanual.grid(row=rowdp,column=0,sticky='nsew')
# analysis page
ap = Tkinter.Frame(self.analysisFrame)
ap.pack(side=Tkinter.TOP, fill=Tkinter.X, expand=1)
rowap = 0
aphh = Tkinter.Button(ap, text='Classic Helixhunter',
command=self.helixhunter_dialog)
aphh.grid(row=rowap,column=0,sticky='nsew')
rowap = rowap + 1
apsseh = Tkinter.Button(ap, text='SSE Hunter',
command=self.ssehunter_dialog)
apsseh.grid(row=rowap,column=0,sticky='nsew')
rowap = rowap + 1
apsseb = Tkinter.Button(ap, text='SSE Builder',
command=self.ssebuilder_dialog)
apsseb.grid(row=rowap,column=0,sticky='nsew')
# misc. page
mp = Tkinter.Frame(self.miscFrame)
mp.pack(side=Tkinter.TOP, fill=Tkinter.X, expand=1)
rowmp = 0
mpmodeview = Tkinter.Button(mp, text='Mode Viewer',
command=self.modeviewer_dialog)
mpmodeview.grid(row=rowmp,column=0,sticky='nsew')
rowmp = rowmp + 1
mprt = Tkinter.Button(mp, text='Rotate n Translate',
command=self.rot_trans_dialog)
mprt.grid(row=rowmp,column=0,sticky='nsew')
## rowmp = rowmp + 1
## mpskeleton = Tkinter.Button(mp, text='Skeleton',
## command=self.skeleton_dialog)
## mpskeleton.grid(row=rowmp,column=0,sticky='nsew')
rowmp = rowmp + 1
mppdb2mrc = Tkinter.Button(mp, text='PDB to MRC',
command=self.pdb2mrc_dialog)
mppdb2mrc.grid(row=rowmp,column=0,sticky='nsew')
rowmp = rowmp + 1
mpcmm2pdb = Tkinter.Button(mp, text='CMM to PDB',
command=self.cmm2pdb_dialog)
mpcmm2pdb.grid(row=rowmp,column=0,sticky='nsew')
rowmp = rowmp + 1
mppdb2cmm = Tkinter.Button(mp, text='PDB to CMM',
command=self.pdb2cmm_dialog)
mppdb2cmm.grid(row=rowmp,column=0,sticky='nsew')
def fillInUI(self, parent):
import Pmw, Tkinter
from chimera import chimage
self.parent = parent
d = prefs.get("treatment", {})
self.treatmentShow = d.get("show", 0)
self.treatmentSelAtom = d.get("selectAtoms", 0)
self.treatmentSelAtomOf = d.get("selectAtomsOf", "all members")
self.treatmentSelModel = d.get("selectModels", 1)
self.treatmentSelModelOf = d.get("selectModelsOf", "all members")
self.treatmentColorModel = d.get("colorModels", 1)
self.treatmentColorModelOf = d.get("colorModelsOf", "all members")
self.rightArrow = chimage.get("rightarrow.png", parent)
self.downArrow = chimage.get("downarrow.png", parent)
if self.treatmentShow:
relief = "sunken"
image = self.downArrow
else:
relief = "flat"
image = self.rightArrow
self.treatmentGroup = Pmw.Group(
parent,
collapsedsize=0,
tagindent=0,
ring_relief=relief,
tag_pyclass=Tkinter.Button,
tag_text=" Treatment of Chosen Clusters",
tag_relief="flat",
tag_compound="left",
tag_image=image,
tag_command=self._treatmentCB)
if not self.treatmentShow:
self.treatmentGroup.collapse()
self.treatmentGroup.pack(side="top", fill="x", padx=3)
self.treatmentSelAtomVar = Tkinter.IntVar(parent)
if self.treatmentSelAtom:
self.treatmentSelAtomVar.set(1)
else:
self.treatmentSelAtomVar.set(0)
f = Tkinter.Frame(self.treatmentGroup.interior())
f.pack(side="top", fill="x")
self.treatmentSelAtomButton = Tkinter.Checkbutton(
f,
text=" Select atoms of",
onvalue=1,
offvalue=0,
variable=self.treatmentSelAtomVar,
command=self._treatmentSelAtomCB)
self.treatmentSelAtomButton.pack(side="left")
self.treatmentSelAtomMenu = Pmw.OptionMenu(
f,
items=("representatives", "all members"),
initialitem=self.treatmentSelAtomOf,
menubutton_pady=0,
command=self._treatmentSelAtomCB)
self.treatmentSelAtomMenu.pack(side="left")
self.treatmentColorModelVar = Tkinter.IntVar(parent)
if self.treatmentColorModel:
self.treatmentColorModelVar.set(1)
else:
self.treatmentColorModelVar.set(0)
f = Tkinter.Frame(self.treatmentGroup.interior())
f.pack(side="top", fill="x")
self.treatmentColorModelButton = Tkinter.Checkbutton(
f,
text=" Color",
onvalue=1,
offvalue=0,
variable=self.treatmentColorModelVar,
command=self._treatmentColorModelCB)
self.treatmentColorModelButton.pack(side="left")
self.treatmentColorModelMenu = Pmw.OptionMenu(
f,
items=("representatives", "all members"),
initialitem=self.treatmentColorModelOf,
menubutton_pady=0,
command=self._treatmentColorModelCB)
self.treatmentColorModelMenu.pack(side="left")
self.treatmentSelModelVar = Tkinter.IntVar(parent)
if self.treatmentSelModel:
self.treatmentSelModelVar.set(1)
else:
self.treatmentSelModelVar.set(0)
f = Tkinter.Frame(self.treatmentGroup.interior())
f.pack(side="top", fill="x")
self.treatmentSelModelButton = Tkinter.Checkbutton(
f,
text=" Choose",
onvalue=1,
offvalue=0,
variable=self.treatmentSelModelVar,
command=self._treatmentSelModelCB)
self.treatmentSelModelButton.pack(side="left")
self.treatmentSelModelMenu = Pmw.OptionMenu(
f,
items=("representatives", "all members"),
initialitem=self.treatmentSelModelOf,
menubutton_pady=0,
labelpos="e",
label_text=" in Model Panel",
command=self._treatmentSelModelCB)
self.treatmentSelModelMenu.pack(side="left")
height = min(len(self.nmrc.clusters), 10)
values = []
maxLength = 0
for id in range(len(self.nmrc.clusters)):
m = self.clusterInfo[id][0]
n = len(self.clusterInfo[id][1])
v = "%d (%d models, rep: %s)" % (id, n, m.oslIdent())
values.append(v)
if len(v) > maxLength:
maxLength = len(v)
self.listbox = Pmw.ScrolledListBox(
self.parent,
listbox_selectmode="extended",
listbox_width=maxLength,
listbox_height=height,
selectioncommand=self._listboxSelect)
self.listbox.pack(fill="both", expand=True)
self.listbox.setlist(values)