def testFormatAll(self):
entryIdList = ['foo', 456]
entryIdListStr = formatall(entryIdList)
self.assertEqual(entryIdListStr, "foo\n456\n")
entryIdTuple = ('test', 123)
# formatall(entryIdTuple) throws a TypeError
self.assertRaises(TypeError, formatall, entryIdTuple)
def testFormatAll(self):
entryIdList = ['foo',456]
entryIdListStr = formatall(entryIdList)
self.assertEqual(entryIdListStr, "foo\n456\n")
entryIdTuple = ('test',123)
# formatall(entryIdTuple) throws a TypeError
self.assertRaises( TypeError, formatall, entryIdTuple)
def test_simplifyForFcFeature(self):
'test simplify Specifically For Fc Feature'
self.createSimpleFastProject()
_distanceRestraintList = self.project.distances.new(DR_LEVEL, status = 'keep')
atomPairs = NTlist()
r1 = self.r1
r2 = self.r2
# r3 = self.r3
atomPairs.append((r1.MG1, r2.MG1))
atomPairs.append((r1.MG2, r2.MG1))
atomPairs.append((r1.MG1, r2.MG2))
atomPairs.append((r1.MG2, r2.MG2))
# atomPairs.append((r2.HN, r2.MG1))
# atomPairs.append((r2.HN, r2.MG2))
distanceRestraint = DistanceRestraint(atomPairs, 0.0, 5.0)
if distanceRestraint.isValid:
_distanceRestraintList.append(distanceRestraint)
else:
nTerror('Failed to initialize DR with %s' % atomPairs)
# nTdebug("dr before: %s" % formatall(distanceRestraint))
# Takes 4 simplification iterations.
self.assertEqual(distanceRestraint.simplifyForFc(), DistanceRestraint.STATUS_SIMPLIFIED)
# nTdebug("dr after 1: %s" % formatall(distanceRestraint))
self.assertEqual(distanceRestraint.simplifyForFc(), DistanceRestraint.STATUS_SIMPLIFIED)
# nTdebug("dr after 2: %s" % formatall(distanceRestraint))
self.assertEqual(distanceRestraint.simplifyForFc(), DistanceRestraint.STATUS_SIMPLIFIED)
# nTdebug("dr after 3: %s" % formatall(distanceRestraint))
self.assertEqual(distanceRestraint.simplifyForFc(), DistanceRestraint.STATUS_NOT_SIMPLIFIED)
# nTdebug("dr after 4: %s" % formatall(distanceRestraint)) # don't print as it contains error token.
_x = "dr after 4: %s" % formatall(distanceRestraint)
def test_simplifyForFcFeature(self):
'test simplify Specifically For Fc Feature'
self.createSimpleFastProject()
_distanceRestraintList = self.project.distances.new(DR_LEVEL,
status='keep')
atomPairs = NTlist()
r1 = self.r1
r2 = self.r2
# r3 = self.r3
atomPairs.append((r1.MG1, r2.MG1))
atomPairs.append((r1.MG2, r2.MG1))
atomPairs.append((r1.MG1, r2.MG2))
atomPairs.append((r1.MG2, r2.MG2))
# atomPairs.append((r2.HN, r2.MG1))
# atomPairs.append((r2.HN, r2.MG2))
distanceRestraint = DistanceRestraint(atomPairs, 0.0, 5.0)
if distanceRestraint.isValid:
_distanceRestraintList.append(distanceRestraint)
else:
nTerror('Failed to initialize DR with %s' % atomPairs)
# nTdebug("dr before: %s" % formatall(distanceRestraint))
# Takes 4 simplification iterations.
self.assertEqual(distanceRestraint.simplifyForFc(),
DistanceRestraint.STATUS_SIMPLIFIED)
# nTdebug("dr after 1: %s" % formatall(distanceRestraint))
self.assertEqual(distanceRestraint.simplifyForFc(),
DistanceRestraint.STATUS_SIMPLIFIED)
# nTdebug("dr after 2: %s" % formatall(distanceRestraint))
self.assertEqual(distanceRestraint.simplifyForFc(),
DistanceRestraint.STATUS_SIMPLIFIED)
# nTdebug("dr after 3: %s" % formatall(distanceRestraint))
self.assertEqual(distanceRestraint.simplifyForFc(),
DistanceRestraint.STATUS_NOT_SIMPLIFIED)
# nTdebug("dr after 4: %s" % formatall(distanceRestraint)) # don't print as it contains error token.
_x = "dr after 4: %s" % formatall(distanceRestraint)
