def setplot(plotdata):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure with both components
plotfigure = plotdata.new_plotfigure(name='h and hu', figno=0)
plotfigure.kwargs = {'figsize': (6, 8)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,1)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [0., 4.5]
plotaxes.title = 'depth h'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 0
plotitem.plotstyle = '-'
plotitem.color = 'b'
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,2)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-2., 6.]
plotaxes.title = 'momentum hu'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 1
plotitem.plotstyle = '-'
plotitem.color = 'b'
plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
print("**** Python plotting tools not yet implemented in 3d")
print("**** No plots will be generated.")
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = False # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [] # list of frames to print
plotdata.print_fignos = [] # list of figures to print
plotdata.html = False # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Pressure and Velocity', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-.5,1.3]
plotaxes.title = 'q'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = '-o'
plotitem.color = 'b'
# Plot true solution for comparison:
def plot_qtrue(current_data):
from pylab import plot, legend
x = current_data.x
t = current_data.t
q = qtrue(x,t)
plot(x,q,'r',label='true solution')
legend()
plotaxes.afteraxes = plot_qtrue
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
print("**** Python plotting tools not yet implemented in 3d")
print("**** No frame plots will be generated.")
print("**** Gauges can still be plotted.")
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q'
# Plot q as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = False # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [] # list of frames to print
plotdata.print_fignos = [] # list of figures to print
plotdata.html = False # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
print("**** Python plotting tools not yet implemented in 3d")
print("**** No frame plots will be generated.")
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q'
# Plot q as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = False # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [] # list of frames to print
plotdata.print_fignos = [] # list of figures to print
plotdata.html = False # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for pcolor plot
plotfigure = plotdata.new_plotfigure(name='q[0]', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Depth Contour'
plotaxes.scaled = False
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = colormaps.red_yellow_blue
plotitem.pcolor_cmin = 0.00
plotitem.pcolor_cmax = 2.80*hn
plotitem.add_colorbar = True
plotitem.celledges_show = 0
plotitem.patchedges_show = 1
plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
# plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Pressure and Velocity', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-.5, 1.3]
plotaxes.title = 'q'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = '-o'
plotitem.color = 'b'
# Plot true solution for comparison:
def plot_qtrue(current_data):
from pylab import plot, legend
x = current_data.x
t = current_data.t
q = qtrue(x, t)
plot(x, q, 'r', label='true solution')
legend()
plotaxes.afteraxes = plot_qtrue
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures()
# Figures corresponding to Figure 9.5 of LeVeque, "Finite Volume
# Methods for Hyperbolic Problems," 2002 (though more of them)
# Tuples of (variable name, variable number)
figdata = [('Pressure', 0),
('Velocity', 1)]
# Afteraxes function: draw a vertical dashed line at the interface
# between different media
def draw_interface(current_data):
import pylab
pylab.plot([0., 0.], [-1000., 1000.], 'k--')
for varname, varid in figdata:
plotfigure = plotdata.new_plotfigure(name=varname, figno=varid)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-5., 5.]
plotaxes.ylimits = [-0.5, 1.5] # Good for both vars because of near-unit impedance
plotaxes.title = varname
plotaxes.afteraxes = draw_interface
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = varid
plotitem.color = 'b'
plotdata.printfigs = True # Whether to output figures
plotdata.print_format = 'png' # What type of output format
plotdata.print_framenos = 'all' # Which frames to output
plotdata.print_fignos = 'all' # Which figures to print
plotdata.html = True # Whether to create HTML files
plotdata.latex = False # Whether to make LaTeX output
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures()
# Figures corresponding to Figure 9.5 of LeVeque, "Finite Volume
# Methods for Hyperbolic Problems," 2002 (though more of them)
# Tuples of (variable name, variable number)
figdata = [('Pressure', 0), ('Velocity', 1)]
# Afteraxes function: draw a vertical dashed line at the interface
# between different media
def draw_interface(current_data):
import pylab
pylab.plot([0., 0.], [-1000., 1000.], 'k--')
for varname, varid in figdata:
plotfigure = plotdata.new_plotfigure(name=varname, figno=varid)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-5., 5.]
plotaxes.ylimits = [
-0.5, 1.5
] # Good for both vars because of near-unit impedance
plotaxes.title = varname
plotaxes.afteraxes = draw_interface
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = varid
plotitem.color = 'b'
plotdata.printfigs = True # Whether to output figures
plotdata.print_format = 'png' # What type of output format
plotdata.print_framenos = 'all' # Which frames to output
plotdata.print_fignos = 'all' # Which figures to print
plotdata.html = True # Whether to create HTML files
plotdata.latex = False # Whether to make LaTeX output
return plotdata
def setplot(plotdata=None):
# --------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Water depth', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
# plotaxes.ylimits = [0.0, 2.8*hn]
plotaxes.title = 'Depth (m)'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = '-o'
plotitem.color = 'b'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
# plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
print("**** Python plotting tools not yet implemented in 3d")
print("**** No plots will be generated.")
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = False # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [] # list of frames to print
plotdata.print_fignos = [] # list of figures to print
plotdata.html = False # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from numpy import linspace
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# plotdata.format = 'forestclaw' # 'ascii' or 'binary' to match setrun.py
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
def fixup(current_data):
import pylab
addgauges(current_data)
t = current_data.t
t = t / 3600. # hours
pylab.title('Surface at %4.2f hours' % t, fontsize=20)
pylab.xticks(fontsize=15)
pylab.yticks(fontsize=15)
plotaxes.afteraxes = fixup
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.2
plotitem.pcolor_cmax = 0.2
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0, 0, 0, 0, 0]
plotitem.patchedges_show = 1
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0, 0, 0]
plotitem.patchedges_show = 1
plotaxes.xlimits = [-120, -60]
plotaxes.ylimits = [-60, 0]
# add contour lines of bathy if desired:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = linspace(-3000, -3000, 1)
plotitem.amr_contour_colors = ['y'] # color on each level
plotitem.kwargs = {'linestyles': 'solid', 'linewidths': 2}
plotitem.amr_contour_show = [0, 0, 0, 0, 0]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface at gauges', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# Plot topo as green curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
def gaugetopo(current_data):
q = current_data.q
h = q[0, :]
eta = q[3, :]
topo = eta - h
return topo
plotitem.plot_var = gaugetopo
plotitem.plotstyle = 'g-'
def add_zeroline(current_data):
from pylab import plot, legend, xticks, floor, axis, xlabel
t = current_data.t
gaugeno = current_data.gaugeno
if gaugeno == 32412:
try:
plot(TG32412[:, 0], TG32412[:, 1], 'r', label='Obs')
legend(['GeoClaw', 'Obs'], loc='lower right')
except:
pass
axis((0, t.max(), -0.3, 0.3))
plot(t, 0 * t, 'k')
n = int(floor(t.max() / 3600.) + 2)
xticks([3600 * i for i in range(n)], ['%i' % i for i in range(n)])
xlabel('time (hours)')
plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Plots of timing (CPU and wall time):
def make_timing_plots(plotdata):
from clawpack.visclaw import plot_timing_stats
import os, sys
try:
timing_plotdir = plotdata.plotdir + '/_timing_figures'
os.system('mkdir -p %s' % timing_plotdir)
# adjust units for plots based on problem:
units = {
'comptime': 'seconds',
'simtime': 'hours',
'cell': 'millions'
}
plot_timing_stats.make_plots(outdir=plotdata.outdir,
make_pngs=True,
plotdir=timing_plotdir,
units=units)
except:
print('*** Error making timing plots')
otherfigure = plotdata.new_otherfigure(name='timing plots',
fname='_timing_figures/timing.html')
otherfigure.makefig = make_timing_plots
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = False # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
plot_direction=False,
kwargs={"markersize": 5})
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 100]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {
"Atlantic": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)
},
"United Kingdom": {
"xlimits": (-10.5, 0),
"ylimits": (51.5, 60.0),
"figsize": (8, 6)
}
}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Atlantic']['xlimits']
plotaxes.ylimits = regions['Atlantic']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Atlantic']['xlimits']
plotaxes.ylimits = regions['Atlantic']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Atlantic']['xlimits']
plotaxes.ylimits = regions['Atlantic']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 2]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-.25, .75]
plotaxes.title = 'Surface'
# -------- Failed attempt at comparing data on Clawpack ----------
#def get_actual_water_levels(gaugeno):
# heights = open("surge_"+str(gaugeno)+".txt", "r")
# surge = []
# for height in heights:
# line = height.strip()
# line = line.split(",")
# line = float(line[0])
# surge.append(line)
#
# t = np.arange(-172800, 172800, 3600, dtype='float')
#
# return t, surge
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
#t, surge = get_actual_water_levels(cd.gaugeno)
#axes.plot(t, surge, color="g", label="Observed")
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 2])
axes.set_ylim([-.25, .75])
axes.set_xticks([-2, -1, 0, 1, 2])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$", r"$2$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
# --------- For only one plot for location of all four gauges, uncomment -------
# def gauge_location_afteraxes(cd):
# plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
# surge_afteraxes(cd)
# gaugetools.plot_gauge_locations(cd.plotdata, gaugenos='all',
# format_string='ko', add_labels=True)
#
# plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
# plotfigure.show = True
#
# # Set up for axes in this figure:
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.title = 'Gauge Locations'
# plotaxes.scaled = True
# plotaxes.xlimits = [-7.0, -4.8]
# plotaxes.ylimits = [55.0, 58.2]
# plotaxes.afteraxes = gauge_location_afteraxes
# surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
# surgeplot.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# individual gauge plots
def gauge_1_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[1],
format_string='ko',
add_labels=True)
def gauge_2_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[2],
format_string='ko',
add_labels=True)
def gauge_3_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[3],
format_string='ko',
add_labels=True)
def gauge_4_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[4],
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge 1")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 1'
plotaxes.scaled = True
plotaxes.xlimits = [-7.0, -6.0]
plotaxes.ylimits = [55.0, 56.0]
plotaxes.afteraxes = gauge_1_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 2")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 2'
plotaxes.scaled = True
plotaxes.xlimits = [-6.5, -5.5]
plotaxes.ylimits = [56.0, 57.0]
plotaxes.afteraxes = gauge_2_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 3")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 3'
plotaxes.scaled = True
plotaxes.xlimits = [-6.0, -5.0]
plotaxes.ylimits = [57.5, 58.5]
plotaxes.afteraxes = gauge_3_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 4")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 4'
plotaxes.scaled = True
plotaxes.xlimits = [-6.0, -5.0]
plotaxes.ylimits = [58.0, 59.0]
plotaxes.afteraxes = gauge_4_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for density - pcolor
plotfigure = plotdata.new_plotfigure(name='Density', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [0,1]
plotaxes.title = 'Density'
plotaxes.scaled = True
plotaxes.afteraxes = addgauges
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
#plotitem.pcolor_cmap = colormaps.yellow_red_blue
plotitem.pcolor_cmin = 0.
plotitem.pcolor_cmax = 2.
plotitem.add_colorbar = True
plotitem.amr_patchedges_show = [0]
plotitem.amr_celledges_show = [0]
# Figure for density - Schlieren
plotfigure = plotdata.new_plotfigure(name='Schlieren', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [0,1]
plotaxes.title = 'Density'
plotaxes.scaled = True # so aspect ratio is 1
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_schlieren')
plotitem.schlieren_cmin = 0.0
plotitem.schlieren_cmax = 1.0
plotitem.plot_var = 0
plotitem.add_colorbar = False
# Figure for grid cells
plotfigure = plotdata.new_plotfigure(name='cells', figno=2)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [0,1]
plotaxes.title = 'Grid patches'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = [1,0]
plotitem.amr_patchedges_show = [1]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [0,1]
plotaxes.title = 'Density'
# Plot q as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from clawpack.visclaw.data import ClawPlotData
from numpy import linspace
if plotdata is None:
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
def fixup(current_data):
import pylab
#addgauges(current_data)
t = current_data.t
t = t / 3600. # hours
pylab.title('Surface at %4.2f hours' % t, fontsize=20)
pylab.xticks(fontsize=15)
pylab.yticks(fontsize=15)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.afteraxes = fixup
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.2
plotitem.pcolor_cmax = 0.2
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.patchedges_show = 1
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.patchedges_show = 1
plotaxes.xlimits = [-120, -60]
plotaxes.ylimits = [-60, 0]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface at gauges', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
def add_zeroline(current_data):
from pylab import plot, legend, xticks, floor, axis, xlabel
t = current_data.t
gaugeno = current_data.gaugeno
plot(t, 0 * t, 'k')
n = int(floor(t.max() / 3600.) + 2)
xticks([3600 * i for i in range(n)], ['%i' % i for i in range(n)])
xlabel('time (hours)')
plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from numpy import linspace
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'ascii' # 'ascii' or 'binary' to match setrun.py
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
def fixup(current_data):
import pylab
addgauges(current_data)
t = current_data.t
t = t / 3600. # hours
pylab.title('Surface at %4.2f hours' % t, fontsize=20)
pylab.xticks(fontsize=15)
pylab.yticks(fontsize=15)
plotaxes.afteraxes = fixup
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.2
plotitem.pcolor_cmax = 0.2
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.patchedges_show = 1
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [1,1,0]
plotitem.patchedges_show = 1
plotaxes.xlimits = [-120,-60]
plotaxes.ylimits = [-60,0]
# add contour lines of bathy if desired:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = linspace(-3000,-3000,1)
plotitem.amr_contour_colors = ['y'] # color on each level
plotitem.kwargs = {'linestyles':'solid','linewidths':2}
plotitem.amr_contour_show = [1,0,0]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface at gauges', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# Plot topo as green curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
def gaugetopo(current_data):
q = current_data.q
h = q[0,:]
eta = q[3,:]
topo = eta - h
return topo
plotitem.plot_var = gaugetopo
plotitem.plotstyle = 'g-'
def add_zeroline(current_data):
from pylab import plot, legend, xticks, floor, axis, xlabel
t = current_data.t
gaugeno = current_data.gaugeno
if gaugeno == 32412:
try:
plot(TG32412[:,0], TG32412[:,1], 'r')
legend(['GeoClaw','Obs'],loc='lower right')
except: pass
axis((0,t.max(),-0.3,0.3))
plot(t, 0*t, 'k')
n = int(floor(t.max()/3600.) + 2)
xticks([3600*i for i in range(n)], ['%i' % i for i in range(n)])
xlabel('time (hours)')
plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for pcolor plot
plotfigure = plotdata.new_plotfigure(name='q[0]', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q[0]'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = colormaps.red_yellow_blue
plotitem.pcolor_cmin = -1.
plotitem.pcolor_cmax = 1.
plotitem.add_colorbar = True
plotitem.celledges_show = 0
plotitem.patchedges_show = 1
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem.show = True # show on plot?
# Figure for contour plot
plotfigure = plotdata.new_plotfigure(name='contour', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q[0]'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = 0
plotitem.contour_levels = np.linspace(-0.9, 0.9, 10)
plotitem.contour_colors = 'k'
plotitem.patchedges_show = 1
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
gamma = 1.4
def pressure(current_data):
q = current_data.q
rho = q[0,:]
u = q[1,:]/rho
p = (gamma-1)*(q[2,:] - 0.5*rho*u**2)
return p
level_labels = ['Level 1','Level 2', 'Level 3', 'Level 4']
level_colors = ['k','g','b','r']
level_styles = '-'
level_markers = ''
def add_legend(current_data):
try:
from clawpack.visclaw import legend_tools
legend_tools.add_legend(labels=level_labels, colors=level_colors,
markers=level_markers, linestyles=level_styles,
loc='upper right')
except:
print('legend_tools error')
pass
# Density and pressure plots
# --------------------------
plotfigure = plotdata.new_plotfigure(name='Density and Pressure', figno=1)
plotfigure.kwargs = {'figsize':(10,5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1,2,1)' # left figure
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [0,7]
plotaxes.title = 'Density'
#plotaxes.afteraxes = add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_pwconst')
plotitem.plot_var = 0
plotitem.amr_color = level_colors
plotitem.amr_plotstyle = level_styles
plotitem.amr_data_show = [1] # all levels
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1,2,2)' # right
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [-10,1100]
plotaxes.title = 'Pressure'
plotaxes.afteraxes = add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_pwconst')
plotitem.plot_var = pressure
plotitem.amr_color = level_colors
plotitem.amr_plotstyle = level_styles
plotitem.amr_data_show = [1] # all levels
# Density and pressure plots, zoomed at final time
# -------------------------------------------------
plotfigure = plotdata.new_plotfigure(name='zoom view', figno=2)
plotfigure.kwargs = {'figsize':(10,5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1,2,1)' # left figure
plotaxes.xlimits = [0.5,0.9]
plotaxes.ylimits = [0,7]
plotaxes.title = 'Density'
#plotaxes.afteraxes = add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_pwconst')
plotitem.plot_var = 0
plotitem.amr_color = level_colors
plotitem.amr_plotstyle = level_styles
plotitem.amr_data_show = [1] # all levels
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1,2,2)' # right
plotaxes.xlimits = [0.5,0.9]
plotaxes.ylimits = [-10,450]
plotaxes.title = 'Pressure'
plotaxes.afteraxes = add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_pwconst')
plotitem.plot_var = pressure
plotitem.amr_color = level_colors
plotitem.amr_plotstyle = level_styles
plotitem.amr_data_show = [1] # all levels
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-1,30]
plotaxes.title = 'Density'
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
# --------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps, geoplot
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = "ascii" # Format of output
# plotdata.format = 'netcdf'
def set_drytol(current_data):
# The drytol parameter is used in masking land and water and
# affects what color map is used for cells with small water depth h.
# The cell will be plotted as dry if h < drytol.
# The best value to use often depends on the application and can
# be set here (measured in meters):
current_data.user["drytol"] = 1.0e-2
plotdata.beforeframe = set_drytol
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, gaugenos="all", format_string="ko", add_labels=True)
# -----------------------------------------
# Figure for pcolor plot
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name="pcolor", figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes("pcolor")
plotaxes.title = "Surface"
plotaxes.scaled = True
# Water
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
# plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.9
plotitem.pcolor_cmax = 0.9
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.amr_patchedges_show = [1]
# Land
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [1, 1, 0]
plotaxes.xlimits = [-100, 100]
plotaxes.ylimits = [-100, 100]
# -----------------------------------------
# Figure for zoom
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name="Zoom", figno=10)
# plotfigure.show = False
plotfigure.kwargs = {"figsize": [12, 7]}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes("diag zoom")
plotaxes.axescmd = "axes([0.0,0.1,0.6,0.6])"
plotaxes.title = "On diagonal"
plotaxes.scaled = True
plotaxes.xlimits = [55, 66]
plotaxes.ylimits = [55, 66]
plotaxes.afteraxes = addgauges
# Water
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
# plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.9
plotitem.pcolor_cmax = 0.9
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.amr_patchedges_show = [1]
# Land
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [1, 1, 0]
# Add contour lines of bathymetry:
plotitem = plotaxes.new_plotitem(plot_type="2d_contour")
plotitem.plot_var = geoplot.topo
from numpy import arange, linspace
plotitem.contour_levels = arange(-10.0, 0.0, 1.0)
plotitem.amr_contour_colors = ["k"] # color on each level
plotitem.kwargs = {"linestyles": "solid"}
plotitem.amr_contour_show = [0, 0, 1] # show contours only on finest level
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
# Add contour lines of topography:
plotitem = plotaxes.new_plotitem(plot_type="2d_contour")
plotitem.plot_var = geoplot.topo
from numpy import arange, linspace
plotitem.contour_levels = arange(0.0, 11.0, 1.0)
plotitem.amr_contour_colors = ["g"] # color on each level
plotitem.kwargs = {"linestyles": "solid"}
plotitem.amr_contour_show = [0, 0, 1] # show contours only on finest level
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
# Add dashed contour line for shoreline
plotitem = plotaxes.new_plotitem(plot_type="2d_contour")
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = [0.0]
plotitem.amr_contour_colors = ["k"] # color on each level
plotitem.kwargs = {"linestyles": "dashed"}
plotitem.amr_contour_show = [0, 0, 1] # show contours only on finest level
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
# -----------------------------------------
# Figure for zoom near axis
# -----------------------------------------
# plotfigure = plotdata.new_plotfigure(name='Zoom2', figno=11)
# now included in same figure as zoom on diagonal
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes("x zoom")
plotaxes.show = True
plotaxes.axescmd = "axes([0.5,0.1,0.6,0.6])"
plotaxes.title = "On x-axis"
plotaxes.scaled = True
plotaxes.xlimits = [82, 93]
plotaxes.ylimits = [-5, 6]
plotaxes.afteraxes = addgauges
# Water
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
# plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.9
plotitem.pcolor_cmax = 0.9
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.amr_patchedges_show = [1]
# Land
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [1, 1, 0]
# Add contour lines of bathymetry:
plotitem = plotaxes.new_plotitem(plot_type="2d_contour")
plotitem.plot_var = geoplot.topo
from numpy import arange, linspace
plotitem.contour_levels = arange(-10.0, 0.0, 1.0)
plotitem.amr_contour_colors = ["k"] # color on each level
plotitem.kwargs = {"linestyles": "solid"}
plotitem.amr_contour_show = [0, 0, 1] # show contours only on finest level
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
# Add contour lines of topography:
plotitem = plotaxes.new_plotitem(plot_type="2d_contour")
plotitem.plot_var = geoplot.topo
from numpy import arange, linspace
plotitem.contour_levels = arange(0.0, 11.0, 1.0)
plotitem.amr_contour_colors = ["g"] # color on each level
plotitem.kwargs = {"linestyles": "solid"}
plotitem.amr_contour_show = [0, 0, 1] # show contours only on finest level
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
# Add dashed contour line for shoreline
plotitem = plotaxes.new_plotitem(plot_type="2d_contour")
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = [0.0]
plotitem.amr_contour_colors = ["k"] # color on each level
plotitem.kwargs = {"linestyles": "dashed"}
plotitem.amr_contour_show = [0, 0, 1] # show contours only on finest level
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
# -----------------------------------------
# Figures for gauges
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name="Surface & topo", figno=300, type="each_gauge")
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = "auto"
plotaxes.ylimits = [-2.0, 2.0]
plotaxes.title = "Surface"
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type="1d_plot")
plotitem.plot_var = 3
plotitem.plotstyle = "b-"
# Plot topo as green curve:
plotitem = plotaxes.new_plotitem(plot_type="1d_plot")
def gaugetopo(current_data):
q = current_data.q
h = q[0, :]
eta = q[3, :]
topo = eta - h
return topo
plotitem.plot_var = gaugetopo
plotitem.plotstyle = "g-"
def add_zeroline(current_data):
from pylab import plot, legend
t = current_data.t
legend(("surface", "topography"), loc="lower left")
plot(t, 0 * t, "k")
plotaxes.afteraxes = add_zeroline
# -----------------------------------------
# Figure for patches alone
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name="patches", figno=2)
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1]
plotaxes.ylimits = [0, 1]
plotaxes.title = "patches"
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type="2d_patch")
plotitem.amr_patch_bgcolor = ["#ffeeee", "#eeeeff", "#eeffee"]
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.amr_patchedges_show = [1]
# -----------------------------------------
# Scatter plot of surface for radially symmetric
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name="Scatter", figno=200)
plotfigure.show = False
# Note: will not look very good unless more of domain is refined
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0.0, 100.0]
plotaxes.ylimits = [-1.5, 2.0]
plotaxes.title = "Scatter plot of surface"
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type="1d_from_2d_data")
plotitem.plot_var = geoplot.surface
def q_vs_radius(current_data):
from numpy import sqrt
x = current_data.x
y = current_data.y
r = sqrt(x ** 2 + y ** 2)
q = current_data.var
return r, q
plotitem.map_2d_to_1d = q_vs_radius
plotitem.plotstyle = "o"
plotitem.amr_color = ["b", "r", "g"]
plotaxes.afteraxes = "import pylab; pylab.legend(['Level 1','Level 2'])"
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = "png" # file format
plotdata.print_framenos = "all" # list of frames to print
plotdata.print_gaugenos = [4, 5, 104, 105] # list of gauges to print
plotdata.print_fignos = "all" # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = "../README.html" # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None, bathy_location=0.15, bathy_angle=0.0,
bathy_left=-1.0, bathy_right=-0.2):
"""Setup the plotting data objects.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
returns plotdata object
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
multilayer_data = clawpack.geoclaw.data.MultilayerData()
multilayer_data.read(os.path.join(plotdata.outdir, 'multilayer.data'))
def transform_c2p(x, y, x0, y0, theta):
return ((x+x0)*np.cos(theta) - (y+y0)*np.sin(theta),
(x+x0)*np.sin(theta) + (y+y0)*np.cos(theta))
def transform_p2c(x, y, x0, y0, theta):
return (x*np.cos(theta) + y*np.sin(theta) - x0,
-x*np.sin(theta) + y*np.cos(theta) - y0)
# Setup bathymetry reference lines
with open(os.path.join(plotdata.outdir, "bathy_geometry.data"), 'r') \
as bathy_geometry_file:
bathy_location = float(bathy_geometry_file.readline())
bathy_angle = float(bathy_geometry_file.readline())
x = [0.0, 0.0]
y = [0.0, 1.0]
x1, y1 = transform_c2p(x[0], y[0], bathy_location, 0.0, bathy_angle)
x2, y2 = transform_c2p(x[1], y[1], bathy_location, 0.0, bathy_angle)
if abs(x1 - x2) < 10**-3:
x = [x1, x1]
y = [clawdata.lower[1], clawdata.upper[1]]
else:
m = (y1 - y2) / (x1 - x2)
x[0] = (clawdata.lower[1] - y1) / m + x1
y[0] = clawdata.lower[1]
x[1] = (clawdata.upper[1] - y1) / m + x1
y[1] = clawdata.upper[1]
ref_lines = [((x[0], y[0]), (x[1], y[1]))]
plotdata.clearfigures()
plotdata.save_frames = False
# ========================================================================
# Generic helper functions
def pcolor_afteraxes(current_data):
bathy_ref_lines(current_data)
def contour_afteraxes(current_data):
axes = plt.gca()
pos = -80.0 * (23e3 / 180) + 500e3 - 5e3
axes.plot([pos, pos], [-300e3, 300e3], 'b',
[pos-5e3, pos-5e3], [-300e3, 300e3], 'y')
wind_contours(current_data)
bathy_ref_lines(current_data)
def profile_afteraxes(current_data):
pass
def bathy_ref_lines(current_data):
axes = plt.gca()
for ref_line in ref_lines:
x1 = ref_line[0][0]
y1 = ref_line[0][1]
x2 = ref_line[1][0]
y2 = ref_line[1][1]
axes.plot([x1, x2], [y1, y2], 'y--', linewidth=1)
# ========================================================================
# Axis limits
xlimits = [-0.5, 0.5]
ylimits = [-0.5, 0.5]
eta = [multilayer_data.eta[0], multilayer_data.eta[1]]
top_surface_limits = [eta[0] - 0.03, eta[0] + 0.03]
internal_surface_limits = [eta[1] - 0.015, eta[1] + 0.015]
top_speed_limits = [0.0, 0.1]
internal_speed_limits = [0.0, 0.03]
# ========================================================================
# Surface Elevations
plotfigure = plotdata.new_plotfigure(name='Surface')
plotfigure.show = True
plotfigure.kwargs = {'figsize': (14, 4)}
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Surface'
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_surface_elevation(plotaxes,1,bounds=top_surface_limits)
# ml_plot.add_surface_elevation(plotaxes,1,bounds=[-0.06,0.06])
# ml_plot.add_surface_elevation(plotaxes,1)
ml_plot.add_land(plotaxes, 1)
# Bottom surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Internal Surface'
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# ml_plot.add_surface_elevation(plotaxes,2,bounds=[-300-0.5,-300+0.5])
ml_plot.add_surface_elevation(plotaxes,2,bounds=internal_surface_limits)
# ml_plot.add_surface_elevation(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
# ========================================================================
# Depths
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Depths', figno=42)
plotfigure.show = False
plotfigure.kwargs = {'figsize':(14,4)}
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Layer Depth'
plotaxes.axescmd = 'subplot(1,2,1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_layer_depth(plotaxes,1,bounds=[-0.1,1.1])
ml_plot.add_land(plotaxes, 1)
# Bottom surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Bottom Layer Depth'
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_layer_depth(plotaxes,2,bounds=[-0.1,0.7])
ml_plot.add_land(plotaxes, 2)
# ========================================================================
# Water Speed
plotfigure = plotdata.new_plotfigure(name='speed')
plotfigure.show = True
plotfigure.kwargs = {'figsize': (14, 4)}
# Top layer speed
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents - Top Layer'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_speed(plotaxes, 1, bounds=top_speed_limits)
ml_plot.add_land(plotaxes, 1)
# Bottom layer speed
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents - Bottom Layer'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.afteraxes = pcolor_afteraxes
# add_speed(plotaxes,2,bounds=[0.0,1e-10])
ml_plot.add_speed(plotaxes,2,bounds=internal_speed_limits)
# add_speed(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
# Individual components
plotfigure = plotdata.new_plotfigure(name='speed_components',figno=401)
plotfigure.show = False
plotfigure.kwargs = {'figsize':(14,14)}
# Top layer
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "X-Velocity - Top Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,1)'
plotaxes.afteraxes = pcolor_afteraxes
# add_x_velocity(plotaxes,1,bounds=[-1e-10,1e-10])
ml_plot.add_x_velocity(plotaxes,1)
ml_plot.add_land(plotaxes, 1)
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Y-Velocity - Top Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,2)'
plotaxes.afteraxes = pcolor_afteraxes
# add_y_velocity(plotaxes,1,bounds=[-0.000125,0.000125])
ml_plot.add_y_velocity(plotaxes,1)
ml_plot.add_land(plotaxes, 1)
# Bottom layer
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "X-Velocity - Bottom Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,3)'
plotaxes.afteraxes = pcolor_afteraxes
# add_x_velocity(plotaxes,2,bounds=[-1e-10,1e-10])
ml_plot.add_x_velocity(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Y-Velocity - Bottom Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,4)'
plotaxes.afteraxes = pcolor_afteraxes
# add_y_velocity(plotaxes,2,bounds=[-0.8e-6,.8e-6])
ml_plot.add_y_velocity(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
# ========================================================================
# Profile Plots
# Note that these are not currently plotted by default - set
# `plotfigure.show = True` is you want this to be plotted
plotfigure = plotdata.new_plotfigure(name='profile')
plotfigure.show = False
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = xlimits
plotaxes.ylimits = [-1.1, 0.1]
plotaxes.title = "Profile of depth"
plotaxes.afteraxes = profile_afteraxes
slice_index = 30
# Internal surface
def bathy_profile(current_data):
return current_data.x[:, slice_index], b(current_data)[:, slice_index]
def lower_surface(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
eta2(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
eta2(current_data)[slice_index, :]
def upper_surface(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
eta1(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
eta1(current_data)[slice_index, :]
def top_speed(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
water_u1(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
water_u1(current_data)[slice_index, :]
def bottom_speed(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
water_u2(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
water_u2(current_data)[slice_index, :]
# Bathy
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
plotitem.map_2d_to_1d = bathy_profile
plotitem.plot_var = 0
plotitem.amr_plotstyle = ['-', '+', 'x']
plotitem.color = 'k'
plotitem.show = True
# Internal Interface
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
plotitem.map_2d_to_1d = lower_surface
plotitem.plot_var = 7
plotitem.amr_plotstyle = ['-', '+', 'x']
plotitem.color = 'b'
plotitem.show = True
# Upper Interface
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
plotitem.map_2d_to_1d = upper_surface
plotitem.plot_var = 6
plotitem.amr_plotstyle = ['-', '+', 'x']
plotitem.color = (0.2, 0.8, 1.0)
plotitem.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Y-Velocity'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# Water
# plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
# # plotitem.plot_var = geoplot.surface
# plotitem.plot_var = water_v
# plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
# # plotitem.pcolor_cmin = -1.e-10
# # plotitem.pcolor_cmax = 1.e-10
# # plotitem.pcolor_cmin = -2.5 # -3.0
# # plotitem.pcolor_cmax = 2.5 # 3.0
# plotitem.add_colorbar = True
# plotitem.amr_celledges_show = [0,0,0]
# plotitem.amr_patchedges_show = [1,1,1]
# Land
ml_plot.add_land(plotaxes, 1)
# ========================================================================
# Contour plot for surface
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='contour_surface',figno=15)
plotfigure.show = False
plotfigure.kwargs = {'figsize':(14,4)}
# Set up for axes in this figure:
# Top Surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Surface'
plotaxes.axescmd = 'subplot(1,2,1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = contour_afteraxes
ml_plot.add_surface_elevation(plotaxes,plot_type='contour',surface=1,bounds=[-2.5,-1.5,-0.5,0.5,1.5,2.5])
ml_plot.add_land(plotaxes, 1, plot_type='contour')
# Internal Surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Internal Surface'
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = contour_afteraxes
ml_plot.add_surface_elevation(plotaxes,plot_type='contour',surface=2,bounds=[-2.5,-1.5,-0.5,0.5,1.5,2.5])
ml_plot.add_land(plotaxes, 2, plot_type='contour')
# ========================================================================
# Contour plot for speed
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='contour_speed',figno=16)
plotfigure.show = False
plotfigure.kwargs = {'figsize':(14,4)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Current'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = contour_afteraxes
# Surface
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = ml_plot.water_speed_depth_ave
plotitem.kwargs = {'linewidths':1}
# plotitem.contour_levels = [1.0,2.0,3.0,4.0,5.0,6.0]
plotitem.contour_levels = [0.5,1.5,3,4.5,6.0]
plotitem.amr_contour_show = [1,1,1]
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
plotitem.amr_contour_colors = 'k'
# plotitem.amr_contour_colors = ['r','k','b'] # color on each level
# plotitem.amr_grid_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.show = True
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = geoplot.land
plotitem.contour_nlevels = 40
plotitem.contour_min = 0.0
plotitem.contour_max = 100.0
plotitem.amr_contour_colors = ['g'] # color on each level
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = 0
plotitem.amr_patchedges_show = 0
plotitem.show = True
# ========================================================================
# Grid Cells
# ========================================================================
# Figure for grid cells
plotfigure = plotdata.new_plotfigure(name='cells', figno=2)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.title = 'Grid patches'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
# ========================================================================
# Vorticity Plot
# ========================================================================
# plotfigure = plotdata.new_plotfigure(name='vorticity',figno=17)
# plotfigure.show = False
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.title = "Vorticity"
# plotaxes.scaled = True
# plotaxes.xlimits = xlimits
# plotaxes.ylimits = ylimits
# plotaxes.afteraxes = pcolor_afteraxes
#
# # Vorticity
# plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
# plotitem.plot_var = 9
# plotitem.imshow_cmap = plt.get_cmap('PRGn')
# # plotitem.pcolor_cmap = plt.get_cmap('PuBu')
# # plotitem.pcolor_cmin = 0.0
# # plotitem.pcolor_cmax = 6.0
# plotitem.imshow_cmin = -1.e-2
# plotitem.imshow_cmax = 1.e-2
# plotitem.add_colorbar = True
# plotitem.amr_celledges_show = [0,0,0]
# plotitem.amr_patchedges_show = [1]
#
# # Land
# plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
# plotitem.plot_var = geoplot.land
# plotitem.pcolor_cmap = geoplot.land_colors
# plotitem.pcolor_cmin = 0.0
# plotitem.pcolor_cmax = 80.0
# plotitem.add_colorbar = False
# plotitem.amr_celledges_show = [0,0,0]
# ========================================================================
# Figures for gauges
# Top
plotfigure = plotdata.new_plotfigure(name='Surface & topo',
type='each_gauge',
figno=301)
plotfigure.show = True
plotfigure.clf_each_gauge = True
plotfigure.kwargs = {'figsize': (14, 4)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.xlimits = [0.0, 1.0]
plotaxes.ylimits = top_surface_limits
plotaxes.title = 'Top Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 6
plotitem.plotstyle = 'b-'
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1, 2, 2)'
plotaxes.xlimits = [0.0, 1.0]
plotaxes.ylimits = internal_surface_limits
plotaxes.title = 'Bottom Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 7
plotitem.plotstyle = 'b-'
# =========================================================================
# Other plots
# Gauge Locations - Enable to see where gauges are located
def locations_afteraxes(current_data, gaugenos='all'):
gaugetools.plot_gauge_locations(current_data.plotdata,
gaugenos=gaugenos,
format_string='kx',
add_labels=True)
pcolor_afteraxes(current_data)
plotfigure = plotdata.new_plotfigure(name='Gauge Locations')
plotfigure.show = False
plotfigure.kwargs = {'figsize': (14, 4)}
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Surface'
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = locations_afteraxes
ml_plot.add_surface_elevation(plotaxes, 1, bounds=top_surface_limits)
ml_plot.add_land(plotaxes, 1)
# Bottom surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Internal Surface'
plotaxes.axescmd = 'subplot(1, 2, 2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = locations_afteraxes
ml_plot.add_surface_elevation(plotaxes, 2, bounds=internal_surface_limits)
ml_plot.add_land(plotaxes, 2)
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
gamma = 1.4
def pressure(current_data):
q = current_data.q
rho = q[0,:]
u = q[1,:]/rho
p = (gamma-1)*(q[2,:] - 0.5*rho*u**2)
return p
plotfigure = plotdata.new_plotfigure(name='Density and Pressure', figno=1)
plotfigure.kwargs = {'figsize':(10,5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1,2,1)' # left figure
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [0,7]
plotaxes.title = 'Density'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = '-'
plotitem.color = 'b'
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1,2,2)' # right
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [0,1450]
plotaxes.title = 'Pressure'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = pressure
plotitem.plotstyle = '-'
plotitem.color = 'b'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from clawpack.visclaw.data import ClawPlotData
from numpy import linspace
if plotdata is None:
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
def fixup(current_data):
import pylab
#addgauges(current_data)
t = current_data.t
t = t / 3600. # hours
pylab.title('Surface at %4.2f hours' % t, fontsize=20)
pylab.xticks(fontsize=15)
pylab.yticks(fontsize=15)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.afteraxes = fixup
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.2
plotitem.pcolor_cmax = 0.2
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [1,1,0]
plotitem.patchedges_show = 1
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [1,1,0]
plotitem.patchedges_show = 1
plotaxes.xlimits = [-120,-60]
plotaxes.ylimits = [-60,0]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface at gauges', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
def add_zeroline(current_data):
from pylab import plot, legend, xticks, floor, axis, xlabel
t = current_data.t
gaugeno = current_data.gaugeno
plot(t, 0*t, 'k')
n = int(floor(t.max()/3600.) + 2)
xticks([3600*i for i in range(n)], ['%i' % i for i in range(n)])
xlabel('time (hours)')
plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
r"""Setplot function for surge plotting"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surgeplot.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008, 8, 1, 12) - datetime.datetime(2008,1,1,0)
landfall = landfall_dt.days * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surgeplot.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Limits for plots
full_xlimits = [clawdata.lower[0], clawdata.upper[0]]
full_ylimits = [clawdata.lower[1], clawdata.upper[1]]
# Color limits
surface_range = 1.0
speed_range = 2.0
xlimits = full_xlimits
ylimits = full_ylimits
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
speed_limits = [0.0,speed_range]
wind_limits = [0,55]
pressure_limits = [966,1013]
ref_lines = []
# ==========================================================================
# Generic helper functions
# ==========================================================================
def pcolor_afteraxes(current_data):
surge_afteraxes(current_data)
# surgeplot.gauge_locations(current_data)
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def bathy_ref_lines(current_data):
pass
# plt.hold(True)
# y = [amrdata.ylower,amrdata.yupper]
# for ref_line in ref_lines:
# plt.plot([ref_line,ref_line],y,'y--')
# plt.hold(False)
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Surface Elevations - Entire Domain
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
# ========================================================================
# Water Speed - Entire Domain
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='speed', figno=1)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# Speed
surgeplot.add_speed(plotaxes,bounds=speed_limits)
# Land
surgeplot.add_land(plotaxes)
# ========================================================================
# Hurricane forcing - Entire Domain
# ========================================================================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure', figno=2)
plotfigure.show = surge_data.pressure_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes,bounds=pressure_limits)
# add_pressure(plotaxes)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',figno=4)
plotfigure.show = surge_data.wind_forcing
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes,bounds=wind_limits,plot_type='imshow')
# add_wind(plotaxes,bounds=wind_limits,plot_type='contour')
# add_wind(plotaxes,bounds=wind_limits,plot_type='quiver')
surgeplot.add_land(plotaxes)
# Wind field components
plotfigure = plotdata.new_plotfigure(name='Wind Components',figno=5)
plotfigure.show = surge_data.wind_forcing and False
plotfigure.kwargs = {'figsize':(16,6)}
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(121)"
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "X-Component of Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = surgeplot.wind_x
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = -wind_limits[1]
plotitem.imshow_cmax = wind_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(122)"
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Y-Component of Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = surgeplot.wind_y
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = -wind_limits[1]
plotitem.imshow_cmax = wind_limits[1]
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
# plotaxes.xlimits = [0.0,amrdata.tfinal]
# plotaxes.ylimits = [0,150.0]
plotaxes.ylimits = surface_limits
plotaxes.title = 'Surface'
plotaxes.afteraxes = surgeplot.gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'r-'
# =================
# Plot bathymetry
# =================
plotfigure = plotdata.new_plotfigure(name='Bathymetry', figno=301)
plotfigure.show = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = full_xlimits
plotaxes.ylimits = full_ylimits
plotaxes.title = "Bathymetry"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type="2d_pcolor")
plotitem.plot_var = geoplot.topo
# plotitem.pcolor_cmap = geoplot.seafloor_colormap
plotitem.pcolor_cmin = -3000.0
plotitem.pcolor_cmax = 300.0
plotitem.add_colorbar = True
surgeplot.add_land(plotaxes)
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
# plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
# type='each_gauge')
# plotfigure.clf_each_gauge = True
#
# # Set up for axes in this figure:
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.xlimits = 'auto'
# plotaxes.ylimits = 'auto'
# plotaxes.title = 'Surface'
#
# # Plot surface as blue curve:
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# # Plot topo as green curve:
# plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.show = False
#
# def gaugetopo(current_data):
# q = current_data.q
# h = q[0,:]
# eta = q[3,:]
# topo = eta - h
# return topo
#
# plotitem.plot_var = gaugetopo
# plotitem.plotstyle = 'g-'
#
# def add_zeroline(current_data):
# from pylab import plot, legend, xticks, floor
# t = current_data.t
# #legend(('surface','topography'),loc='lower left')
# plot(t, 0*t, 'k')
# n = int(floor(t.max()/3600.) + 2)
# xticks([3600*i for i in range(n)])
#
# plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
# plotdata.print_framenos = [45,46,47,48]
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from numpy import linspace
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary' # 'ascii', 'binary', 'netcdf'
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
def timeformat(t):
from numpy import mod
hours = int(t / 3600.)
tmin = mod(t, 3600.)
min = int(tmin / 60.)
sec = int(mod(tmin, 60.))
timestr = '%s:%s:%s' % (hours, str(min).zfill(2), str(sec).zfill(2))
return timestr
def title_hours(current_data):
from pylab import title
t = current_data.t
timestr = timeformat(t)
title('Adjoint time %s before time of interest' % timestr)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Adjoint'
plotaxes.scaled = True
plotaxes.afteraxes = title_hours
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.005
plotitem.pcolor_cmax = 0.005
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
plotaxes.xlimits = [-120, -60]
plotaxes.ylimits = [-60, 0]
# add contour lines of bathy if desired:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = linspace(-3000, -3000, 1)
plotitem.amr_contour_colors = ['y'] # color on each level
plotitem.kwargs = {'linestyles': 'solid', 'linewidths': 2}
plotitem.amr_contour_show = [1, 0, 0]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for pcolor plot
plotfigure = plotdata.new_plotfigure(name='pcolor', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1]
plotaxes.ylimits = [0, 1]
plotaxes.title = 'Solution'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = colormaps.yellow_red_blue
plotitem.pcolor_cmin = 0.1
plotitem.pcolor_cmax = 1.
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0]
plotitem.amr_patchedges_show = [0]
# Figure for contour plot
plotfigure = plotdata.new_plotfigure(name='contour', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1]
plotaxes.ylimits = [0, 1]
plotaxes.title = 'Solution'
plotaxes.scaled = True
plotaxes.afteraxes = addgauges
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = 0
plotitem.contour_nlevels = 20
plotitem.contour_min = 0.01
plotitem.contour_max = 0.99
plotitem.amr_contour_colors = ['r', 'g', 'b'] # color on each level
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
# Figure for grid cells
plotfigure = plotdata.new_plotfigure(name='cells', figno=2)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1]
plotaxes.ylimits = [0, 1]
plotaxes.title = 'Grid patches'
plotaxes.scaled = True
def plot_rr(current_data):
from pylab import plot
plot(xv1, yv1, 'b', lw=2)
plot(xv2, yv2, 'b', lw=2)
plotaxes.afteraxes = plot_rr
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.amr_patchedges_show = [1]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q'
# Plot q as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
import os
import numpy as np
import matplotlib.pyplot as plt
from clawpack.visclaw import geoplot, gaugetools, colormaps
import clawpack.clawutil.data as clawutil
import clawpack.amrclaw.data as amrclaw
import clawpack.geoclaw.data
import clawpack.geoclaw.multilayer.plot as ml_plot
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from numpy import linspace
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.save_frames = False
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
geodata = clawpack.geoclaw.data.GeoClawData()
geodata.read(os.path.join(plotdata.outdir,'geoclaw.data'))
multilayer_data = clawpack.geoclaw.data.MultilayerData()
multilayer_data.read(os.path.join(plotdata.outdir,'multilayer.data'))
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
# ========================================================================
# Generic helper functions
# ========================================================================
def pcolor_afteraxes(current_data):
# bathy_ref_lines(current_data)
gauge_locations(current_data)
def contour_afteraxes(current_data):
# gauge_locations(current_data)
# m_to_km_labels()
plt.hold(True)
pos = -80.0 * (23e3 / 180) + 500e3 - 5e3
plt.plot([pos,pos],[-300e3,300e3],'b',[pos-5e3,pos-5e3],[-300e3,300e3],'y')
plt.hold(False)
wind_contours(current_data)
bathy_ref_lines(current_data)
def profile_afteraxes(current_data):
pass
def gauge_locations(current_data,gaugenos='all'):
plt.hold(True)
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos=gaugenos, format_string='kx', add_labels=True)
plt.hold(False)
# ========================================================================
# Axis limits
# xlimits = [amrdata.xlower,amrdata.xupper]
xlimits = [-100.0, 100.0]
# ylimits = [amrdata.ylower,amrdata.yupper]
ylimits = [-100.0, 100.0]
eta = [multilayer_data.eta[0],multilayer_data.eta[1]]
top_surface_limits = [eta[0]-10,eta[0]+10]
internal_surface_limits = [eta[1]-5,eta[1]+5]
depth_limits = [0.0, 0.4]
top_speed_limits = [0.0,0.1]
internal_speed_limits = [0.0,0.03]
# ========================================================================
# Surface Elevations
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
plotfigure.show = True
plotfigure.kwargs = {'figsize':(14,4)}
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Surface'
plotaxes.axescmd = 'subplot(1,2,1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
ml_plot.add_inundation(plotaxes, 1, bounds=depth_limits)
ml_plot.add_surface_elevation(plotaxes,1,bounds=top_surface_limits)
ml_plot.add_land(plotaxes, 1)
# Bottom surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Internal Surface'
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
ml_plot.add_inundation(plotaxes, 2, bounds=depth_limits)
ml_plot.add_surface_elevation(plotaxes,2,bounds=internal_surface_limits)
ml_plot.add_colorbar = True
ml_plot.add_land(plotaxes, 2)
# ========================================================================
# Figure for cross section
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='cross-section', figno=4)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.title = 'Cross section at y=0'
ml_plot.add_cross_section(plotaxes, 1)
ml_plot.add_cross_section(plotaxes, 2)
ml_plot.add_land_cross_section(plotaxes)
# ========================================================================
# Water Speed
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='speed', figno=1)
plotfigure.show = False
plotfigure.kwargs = {'figsize':(14,4)}
# Top layer speed
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents - Top Layer'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(1,2,1)'
ml_plot.add_speed(plotaxes,1,bounds=top_speed_limits)
ml_plot.add_land(plotaxes, 1)
# Bottom layer speed
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents - Bottom Layer'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(1,2,2)'
ml_plot.add_speed(plotaxes,2,bounds=internal_speed_limits)
ml_plot.add_land(plotaxes, 2)
# Individual components
plotfigure = plotdata.new_plotfigure(name='speed_components',figno=401)
plotfigure.show = False
plotfigure.kwargs = {'figsize':(14,14)}
# Top layer
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "X-Velocity - Top Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,1)'
ml_plot.add_x_velocity(plotaxes,1)
ml_plot.add_land(plotaxes, 1)
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Y-Velocity - Top Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,2)'
ml_plot.add_y_velocity(plotaxes,1)
ml_plot.add_land(plotaxes, 1)
# Bottom layer
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "X-Velocity - Bottom Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,3)'
ml_plot.add_x_velocity(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Y-Velocity - Bottom Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,4)'
ml_plot.add_y_velocity(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface at gauges', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# Plot topo as green curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
def gaugetopo(current_data):
q = current_data.q
h = q[0,:]
eta = q[3,:]
topo = eta - h
return topo
plotitem.plot_var = gaugetopo
plotitem.plotstyle = 'g-'
def add_zeroline(current_data):
from pylab import plot, legend, xticks, floor, axis, xlabel
t = current_data.t
gaugeno = current_data.gaugeno
if gaugeno == 32412:
try:
plot(TG32412[:,0], TG32412[:,1], 'r')
legend(['GeoClaw','Obs'],loc='lower right')
except: pass
axis((0,t.max(),-0.3,0.3))
plot(t, 0*t, 'k')
n = int(floor(t.max()/3600.) + 2)
xticks([3600*i for i in range(n)], ['%i' % i for i in range(n)])
xlabel('time (hours)')
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
r"""Setplot function for surge plotting"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
fig_num_counter = surgeplot.figure_counter()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir,'claw.data'))
amrdata = amrclaw.AmrclawInputData(clawdata)
amrdata.read(os.path.join(plotdata.outdir,'amr.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir,'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir,'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir,'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir,'fort.track'))
# Calculate landfall time, off by a day, maybe leap year issue?
landfall_dt = datetime.datetime(2008,9,13,7) - datetime.datetime(2008,1,1,0)
landfall = (landfall_dt.days - 1.0) * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
surge_afteraxes = lambda cd: surgeplot.surge_afteraxes(cd,
track, landfall, plot_direction=False)
# Color limits
surface_range = 5.0
speed_range = 3.0
eta = physics.sea_level
if not isinstance(eta,list):
eta = [eta]
surface_limits = [eta[0]-surface_range,eta[0]+surface_range]
# surface_contours = numpy.linspace(-surface_range, surface_range,11)
surface_contours = [-5,-4.5,-4,-3.5,-3,-2.5,-2,-1.5,-1,-0.5,0.5,1,1.5,2,2.5,3,3.5,4,4.5,5]
surface_ticks = [-5,-4,-3,-2,-1,0,1,2,3,4,5]
surface_labels = [str(value) for value in surface_ticks]
speed_limits = [0.0,speed_range]
speed_contours = numpy.linspace(0.0,speed_range,13)
speed_ticks = [0,1,2,3]
speed_labels = [str(value) for value in speed_ticks]
wind_limits = [0,64]
# wind_limits = [-0.002,0.002]
pressure_limits = [935,1013]
friction_bounds = [0.01,0.04]
# vorticity_limits = [-1.e-2,1.e-2]
# def pcolor_afteraxes(current_data):
# surge_afteraxes(current_data)
# surge.plot.gauge_locations(current_data,gaugenos=[6])
def contour_afteraxes(current_data):
surge_afteraxes(current_data)
def add_custom_colorbar_ticks_to_axes(axes, item_name, ticks, tick_labels=None):
axes.plotitem_dict[item_name].colorbar_ticks = ticks
axes.plotitem_dict[item_name].colorbar_tick_labels = tick_labels
# ==========================================================================
# ==========================================================================
# Plot specifications
# ==========================================================================
# ==========================================================================
# ========================================================================
# Entire Gulf
# ========================================================================
gulf_xlimits = [clawdata.lower[0],clawdata.upper[0]]
gulf_ylimits = [clawdata.lower[1],clawdata.upper[1]]
gulf_shrink = 0.9
def gulf_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gulf_shrink)
surgeplot.add_land(plotaxes,topo_min=-10.0,topo_max=5.0)
# surge.plot.add_bathy_contours(plotaxes)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
# Speed
surgeplot.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=gulf_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# Land
surgeplot.add_land(plotaxes)
surgeplot.add_bathy_contours(plotaxes)
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction',
figno=fig_num_counter.get_counter())
plotfigure.show = friction_data.variable_friction and True
def friction_after_axes(cd):
plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes,bounds=friction_bounds,shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
# ========================================================================
# LaTex Shelf
# ========================================================================
latex_xlimits = [-97.5,-88.5]
latex_ylimits = [27.5,30.5]
latex_shrink = 1.0
def latex_after_axes(cd):
if article:
plt.subplots_adjust(left=0.07, bottom=0.14, right=1.0, top=0.86)
else:
plt.subplots_adjust(right=1.0)
surge_afteraxes(cd)
#
# Surface
#
plotfigure = plotdata.new_plotfigure(name='Surface - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.afteraxes = lambda cd: article_latex_after_axes(cd, landfall)
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', [-5,-2.5,0,2.5,5.0],
["-5.0","-2.5"," 0"," 2.5"," 5.0"])
# plotaxes.plotitem_dict['surface'].contour_cmap = plt.get_cmap('OrRd')
# surge.plot.add_surface_elevation(plotaxes,plot_type='contour')
surgeplot.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - LaTex Shelf',
figno=fig_num_counter.get_counter())
plotfigure.show = True
if article:
plotfigure.kwargs = {'figsize':(8,2.7), 'facecolor':'none'}
else:
plotfigure.kwargs = {'figsize':(9,2.7), 'facecolor':'none'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = latex_xlimits
plotaxes.ylimits = latex_ylimits
plotaxes.afteraxes = latex_after_axes
surgeplot.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=latex_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
# surge.plot.add_surface_elevation(plotaxes,plot_type='contour')
surgeplot.add_land(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,0,0,0,0,0]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,0,0,0,0]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ========================================================================
# Houston/Galveston
# ========================================================================
houston_xlimits = [-(95.0 + 26.0 / 60.0), -(94.0 + 25.0 / 60.0)]
houston_ylimits = [29.1, 29.0 + 55.0 / 60.0]
houston_shrink = 0.9
def houston_after_axes(cd):
if article:
plt.subplots_adjust(left=0.05, bottom=0.07, right=0.99, top=0.92)
else:
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
# surge.plot.gauge_locations(cd)
#
# Surface Elevations
#
plotfigure = plotdata.new_plotfigure(name='Surface - Houston/Galveston',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# if article:
# plotfigure.kwargs['figsize'] =
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = houston_xlimits
plotaxes.ylimits = houston_ylimits
plotaxes.afteraxes = houston_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=houston_shrink)
if article:
plotaxes.plotitem_dict['surface'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# surge.plot.add_bathy_contours(plotaxes)
# Plot using jet and 0.0 to 5.0 to match figgen generated ADCIRC results
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
#
# Water Speed
#
plotfigure = plotdata.new_plotfigure(name='Currents - Houston/Galveston',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents'
plotaxes.scaled = True
plotaxes.xlimits = houston_xlimits
plotaxes.ylimits = houston_ylimits
plotaxes.afteraxes = houston_after_axes
surgeplot.add_speed(plotaxes, plot_type='contourf',
contours=speed_contours,
shrink=houston_shrink)
if article:
plotaxes.plotitem_dict['speed'].add_colorbar = False
else:
add_custom_colorbar_ticks_to_axes(plotaxes, 'speed', speed_ticks, speed_labels)
surgeplot.add_land(plotaxes)
# surge.plot.add_bathy_contours(plotaxes)
# plotaxes.plotitem_dict['speed'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
# plotaxes.plotitem_dict['land'].amr_patchedges_show = [1,1,1,1,1,1,1,1]
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ==========================
# Hurricane Forcing fields
# ==========================
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits, shrink=gulf_shrink)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed',
figno=fig_num_counter.get_counter())
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Wind Field"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits, plot_type='pcolor',
shrink=gulf_shrink)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Surface & topo', figno=300, \
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# plotfigure.kwargs['figsize'] = (16,10)
def gauge_after_axes(cd):
if cd.gaugeno in [1,2,3,4]:
axes = plt.gca()
# # Add Kennedy gauge data
# kennedy_gauge = kennedy_gauges[gauge_name_trans[cd.gaugeno]]
# axes.plot(kennedy_gauge['t'] - seconds2days(date2seconds(gauge_landfall[0])),
# kennedy_gauge['mean_water'] + kennedy_gauge['depth'], 'k-',
# label='Gauge Data')
# Add GeoClaw gauge data
geoclaw_gauge = cd.gaugesoln
axes.plot(seconds2days(geoclaw_gauge.t - date2seconds(gauge_landfall[1])),
geoclaw_gauge.q[3,:] + gauge_surface_offset[0], 'b--',
label="GeoClaw")
# Add ADCIRC gauge data
# ADCIRC_gauge = ADCIRC_gauges[kennedy_gauge['gauge_no']]
# axes.plot(seconds2days(ADCIRC_gauge[:,0] - gauge_landfall[2]),
# ADCIRC_gauge[:,1] + gauge_surface_offset[1], 'r-.', label="ADCIRC")
# Fix up plot
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2,1])
axes.set_ylim([-1,5])
axes.set_xticks([-2,-1,0,1])
axes.set_xticklabels([r"$-2$",r"$-1$",r"$0$",r"$1$"])
axes.grid(True)
axes.legend()
plt.hold(False)
# surge.plot.gauge_afteraxes(cd)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1,5]
plotaxes.title = 'Surface'
plotaxes.afteraxes = gauge_after_axes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# =====================
# Gauge Location Plot
# =====================
gauge_xlimits = [-95.5, -94]
gauge_ylimits = [29.0, 30.0]
gauge_location_shrink = 0.75
def gauge_after_axes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
surgeplot.gauge_locations(cd, gaugenos=[1, 2, 3, 4])
plt.title("Gauge Locations")
plotfigure = plotdata.new_plotfigure(name='Gauge Locations',
figno=fig_num_counter.get_counter())
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.xlimits = gauge_xlimits
plotaxes.ylimits = gauge_ylimits
plotaxes.afteraxes = gauge_after_axes
surgeplot.add_surface_elevation(plotaxes, plot_type='contourf',
contours=surface_contours,
shrink=gauge_location_shrink)
# surge.plot.add_surface_elevation(plotaxes, plot_type="contourf")
add_custom_colorbar_ticks_to_axes(plotaxes, 'surface', surface_ticks, surface_labels)
surgeplot.add_land(plotaxes)
# plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
# plotaxes.plotitem_dict['surface'].add_colorbar = False
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('jet')
# plotaxes.plotitem_dict['surface'].pcolor_cmap = plt.get_cmap('gist_yarg')
# plotaxes.plotitem_dict['surface'].pcolor_cmin = 0.0
# plotaxes.plotitem_dict['surface'].pcolor_cmax = 5.0
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0,0,0,0,0,0,0]
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0,0,0,0,0,0,0]
# ==============================================================
# Debugging Plots, only really work if using interactive plots
# ==============================================================
#
# Water Velocity Components
#
plotfigure = plotdata.new_plotfigure(name='Velocity Components - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# X-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(121)"
plotaxes.title = 'Velocity, X-Component'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.water_u
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surgeplot.add_land(plotaxes)
# Y-Component
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = "subplot(122)"
plotaxes.title = 'Velocity, Y-Component'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.water_v
plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.pcolor_cmin = -speed_limits[1]
plotitem.pcolor_cmax = speed_limits[1]
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1]
surgeplot.add_land(plotaxes)
#
# Depth
#
plotfigure = plotdata.new_plotfigure(name='Depth - Entire Domain',
figno=fig_num_counter.get_counter())
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'depth'
plotaxes.scaled = True
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.afteraxes = gulf_after_axes
plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
plotitem.plot_var = 0
plotitem.imshow_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
plotitem.imshow_cmin = 0
plotitem.imshow_cmax = 100
plotitem.colorbar_shrink = gulf_shrink
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,1,1,1,1]
# Surge field
plotfigure = plotdata.new_plotfigure(name='Surge Field',
figno=fig_num_counter.get_counter())
plotfigure.show = ((surge_data.wind_forcing or surge_data.pressure_forcing)
and False)
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Storm Surge Source Term S"
plotaxes.afteraxes = gulf_after_axes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.pressure_field + 1
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = gulf_shrink
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surgeplot.add_land(plotaxes)
plotfigure = plotdata.new_plotfigure(name='Friction/Coriolis Source',
figno=fig_num_counter.get_counter())
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = gulf_xlimits
plotaxes.ylimits = gulf_ylimits
plotaxes.title = "Friction/Coriolis Source"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = surgeplot.pressure_field + 2
plotitem.pcolor_cmap = plt.get_cmap('PuBu')
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 1e-3
plotitem.add_colorbar = True
plotitem.colorbar_shrink = gulf_shrink
plotitem.colorbar_label = "Source Strength"
plotitem.amr_celledges_show = [0,0,0]
plotitem.amr_patchedges_show = [1,1,1,1,1,0,0]
surgeplot.add_land(plotaxes)
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
if article:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = [54,60,66,72,78,84] # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = [4,5,6,7,10,3,300] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
else:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1,2,3,4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps
from numpy import linspace
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
def plot_corner(current_data):
from pylab import plot
plot([.0,.0],[-1,0],'r',linewidth=2)
plot([.0,1],[0,.55],'r',linewidth=2)
def sigmatr(current_data):
# trace of sigma
q = current_data.q
return q[0,:,:] + q[1,:,:]
# Figure for trace of sigma
plotfigure = plotdata.new_plotfigure(name='trace(sigma)', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'trace(sigma)'
plotaxes.scaled = True
plotaxes.afteraxes = plot_corner
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = sigmatr
plotitem.pcolor_cmap = colormaps.red_yellow_blue
plotitem.pcolor_cmin = -1.
plotitem.pcolor_cmax = 1.
plotitem.add_colorbar = True
plotitem.show = True # show on plot?
# Figure for shear stress
plotfigure = plotdata.new_plotfigure(name='shear', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'shear stress'
plotaxes.scaled = True
plotaxes.afteraxes = plot_corner
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 2 # sigma_12
plotitem.pcolor_cmap = colormaps.red_yellow_blue
plotitem.pcolor_cmin = -0.2
plotitem.pcolor_cmax = 0.2
plotitem.add_colorbar = True
plotitem.show = True # show on plot?
# Figure for contours
plotfigure = plotdata.new_plotfigure(name='contours', figno=2)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'pressure(black) and shear(green)'
plotaxes.scaled = True
plotaxes.afteraxes = plot_corner
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = sigmatr
plotitem.contour_levels = linspace(-2,8,50)
plotitem.contour_colors = 'k'
plotitem.show = True # show on plot?
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = 2 # sigma_12
plotitem.contour_levels = linspace(-0.4,0.4,30)
plotitem.contour_colors = 'g'
plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for pcolor plot
plotfigure = plotdata.new_plotfigure(name='pcolor', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1]
plotaxes.ylimits = [0, 1]
plotaxes.title = 'Solution'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = colormaps.yellow_red_blue
plotitem.pcolor_cmin = 0.1
plotitem.pcolor_cmax = 1.
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0]
plotitem.amr_patchedges_show = [0]
# Figure for contour plot
plotfigure = plotdata.new_plotfigure(name='contour', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1]
plotaxes.ylimits = [0, 1]
plotaxes.title = 'Solution'
plotaxes.scaled = True
plotaxes.afteraxes = addgauges
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = 0
plotitem.contour_nlevels = 20
plotitem.contour_min = 0.01
plotitem.contour_max = 0.99
plotitem.amr_contour_show = [0, 0, 1, 1]
plotitem.amr_contour_colors = ['g', 'g', 'r', 'b'] # color on each level
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee', '#ddffff']
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
# Figure for grid cells
plotfigure = plotdata.new_plotfigure(name='cells', figno=2)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1]
plotaxes.ylimits = [0, 1]
plotaxes.title = 'Grid patches'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee', '#ddffff']
plotitem.amr_celledges_show = [1, 0, 0]
plotitem.amr_patchedges_show = [1]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q'
# Plot q as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
#-----------------------------------------
# Plots of timing (CPU and wall time):
def make_timing_plots(plotdata):
from clawpack.visclaw import plot_timing_stats
import os, sys
try:
timing_plotdir = plotdata.plotdir + '/_timing_figures'
os.system('mkdir -p %s' % timing_plotdir)
# adjust units for plots based on problem:
units = {
'comptime': 'seconds',
'simtime': 'dimensionless',
'cell': 'millions'
}
plot_timing_stats.make_plots(outdir=plotdata.outdir,
make_pngs=True,
plotdir=timing_plotdir,
units=units)
except:
print('*** Error making timing plots')
otherfigure = plotdata.new_otherfigure(name='timing plots',
fname='_timing_figures/timing.html')
otherfigure.makefig = make_timing_plots
# Parameters used only when creating html and/or latex hardcopy
# e.g., via visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Calculate landfall time
# Landfall for Ike in Houston was September 13th, at 7 UTC
landfall_dt = datetime.datetime(2008, 9, 13, 7) - \
datetime.datetime(2008, 1, 1, 0)
landfall = landfall_dt.days * 24.0 * 60**2 + landfall_dt.seconds
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd, track, landfall, plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def gulf_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
surge_afteraxes(cd)
def latex_after_axes(cd):
# plt.subplot_adjust()
surge_afteraxes(cd)
def friction_after_axes(cd):
# plt.subplots_adjust(left=0.08, bottom=0.04, right=0.97, top=0.96)
plt.title(r"Manning's $n$ Coefficient")
# surge_afteraxes(cd)
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {"Gulf": {"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)},
"LaTex Shelf": {"xlimits": (-97.5, -88.5),
"ylimits": (27.5, 30.5),
"figsize": (8, 2.7)}}
for (name, region_dict) in regions.iteritems():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces', figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes, landfall=landfall)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata, gaugenos='all',
format_string='ko', add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-95.5, -94]
plotaxes.ylimits = [29.0, 30.0]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
def set_drytol(current_data):
# The drytol parameter is used in masking land and water and
# affects what color map is used for cells with small water depth h.
# The cell will be plotted as dry if h < drytol.
# The best value to use often depends on the application and can
# be set here (measured in meters):
current_data.user["drytol"] = 1.e-3
plotdata.beforeframe = set_drytol
#-----------------------------------------
# Figure for pcolor plot
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='pcolor', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.surface
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.1
plotitem.pcolor_cmax = 0.1
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 1
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 1
plotaxes.xlimits = [-2, 2]
plotaxes.ylimits = [-2, 2]
# Add contour lines of bathymetry:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = geoplot.topo
from numpy import arange, linspace
plotitem.contour_levels = linspace(-.1, 0.5, 20)
plotitem.amr_contour_colors = ['k'] # color on each level
plotitem.kwargs = {'linestyles': 'solid'}
plotitem.amr_contour_show = [1]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
#-----------------------------------------
# Figure for cross section
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='cross-section', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 2]
plotaxes.ylimits = [-0.15, 0.3]
plotaxes.title = 'Cross section at y=0'
def plot_topo_xsec(current_data):
from pylab import plot, hold, cos, sin, where, legend, nan
t = current_data.t
hold(True)
x = linspace(-2, 2, 201)
y = 0.
B = h0 * (x**2 + y**2) / a**2 - h0
eta1 = sigma * h0 / a**2 * (2. * x * cos(omega * t) +
2. * y * sin(omega * t) - sigma)
etatrue = where(eta1 > B, eta1, nan)
plot(x, etatrue, 'r', label="true solution", linewidth=2)
plot(x, B, 'g', label="bathymetry")
## plot([0],[-1],'kx',label="Level 1") # shouldn't show up in plots,
## plot([0],[-1],'bo',label="Level 2") # but will produced desired legend
plot([0], [-1], 'bo', label="Computed") ## need to fix plotstyle
legend()
hold(False)
plotaxes.afteraxes = plot_topo_xsec
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
def xsec(current_data):
# Return x value and surface eta at this point, along y=0
from pylab import find, ravel
x = current_data.x
y = current_data.y
dy = current_data.dy
q = current_data.q
ij = find((y <= dy / 2.) & (y > -dy / 2.))
x_slice = ravel(x)[ij]
eta_slice = ravel(q[3, :, :])[ij]
return x_slice, eta_slice
plotitem.map_2d_to_1d = xsec
plotitem.plotstyle = 'kx' ## need to be able to set amr_plotstyle
plotitem.kwargs = {'markersize': 3}
plotitem.amr_show = [1] # plot on all levels
#-----------------------------------------
# Figure for grids alone
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='grids', figno=2)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 2]
plotaxes.ylimits = [-2, 2]
plotaxes.title = 'grids'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = [1, 1, 0]
plotitem.amr_patchedges_show = [1]
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = "ascii"
# Figure for pcolor plot
plotfigure = plotdata.new_plotfigure(name='q[0]', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q[0]'
plotaxes.scaled = True
plotaxes.afteraxes = addgauges
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = colormaps.red_yellow_blue
plotitem.pcolor_cmin = -1.
plotitem.pcolor_cmax = 1.
plotitem.add_colorbar = True
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem.show = True # show on plot?
# Figure for contour plot
plotfigure = plotdata.new_plotfigure(name='contour', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q[0]'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = 0
plotitem.contour_levels = np.linspace(-0.9, 0.9, 10)
plotitem.amr_contour_colors = ['k','b']
plotitem.patchedges_show = 1
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem.show = True # show on plot?
# Figure for grids
plotfigure = plotdata.new_plotfigure(name='grids', figno=2)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'grids'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem.amr_celledges_show = [1,1,0]
plotitem.amr_patchedges_show = [1]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q'
# Plot q as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
def draw_interface_add_legend(current_data):
from pylab import plot
from numpy import abs, where, log10, exp, sin, linspace
#plot([0., 0.], [-1000., 1000.], 'k--')
try:
from clawpack.visclaw import legend_tools
labels = [
'Level 1', 'Level 2', 'Level 3', 'Level 4', 'Level 5',
'Level 6', 'Level 7', 'Level 8', 'Level 9', 'Level 10'
]
legend_tools.add_legend(labels,
colors=amr_color,
markers=amr_marker,
linestyles=amr_linestyle,
loc='upper left')
except:
pass
# exact solution:
t = current_data.t
xx = linspace(-12, 12, 10000)
#xpct = xx + t
#xmct = xx - t
#p_true = ar*exp(-betar*(xpct-5)**2) * sin(freqr*xpct) + \
# al*exp(-betal*(xmct+5)**2) * sin(freql*xmct)
p_true = p_true_fcn(xx, t)
plot(xx, p_true, 'k')
def draw_interface_add_legend_innerprod(current_data):
from pylab import plot
#plot([0., 0.], [-1000., 1000.], 'k--')
try:
from clawpack.visclaw import legend_tools
labels = ['Level 3', 'Level 4']
legend_tools.add_legend(labels,
colors=['r', 'c'],
markers=['o', '^'],
linestyles=['', ''],
loc='upper left')
except:
pass
def add_grid(current_data):
from pylab import grid
grid(True)
def color_by_level(current_data):
from pylab import vstack, contourf, plot, ones, arange, colorbar
fs = current_data.framesoln
pout, level = gridtools1.grid_output_1d(fs, 0, xout, return_level=True)
Xout = vstack((xout, xout))
Yout = vstack((-1.1 * ones(xout.shape), 1.1 * ones(xout.shape)))
L = vstack((level, level))
contourf(Xout, Yout, L, v_levels, colors=c_levels)
cb = colorbar(ticks=range(1, maxlevels + 1))
cb.set_label('AMR Level')
plot(xout, pout, 'k')
#import pdb; pdb.set_trace()
def error_color_by_level(current_data):
from pylab import vstack,contourf,plot,ones,arange,colorbar,\
ylim,semilogy
fs = current_data.framesoln
t = current_data.t
pout, level = gridtools1.grid_output_1d(fs, 0, xout, return_level=True)
err = abs(pout - p_true_fcn(xout, t))
Xout = vstack((xout, xout))
Yout = vstack((ylimits_error[0] * ones(xout.shape),
ylimits_error[1] * ones(xout.shape)))
L = vstack((level, level))
contourf(Xout, Yout, L, v_levels, colors=c_levels)
cb = colorbar(ticks=range(1, maxlevels + 1))
cb.set_label('AMR Level')
semilogy(xout, err, 'k')
#semilogy(xout,level,'k')
if tolerance is not None:
plot(xout, tolerance * ones(xout.shape), 'r--')
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Pressure and Velocity', figno=1)
plotfigure.kwargs = {'figsize': (8, 8)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,1)' # top figure
plotaxes.xlimits = xlimits
plotaxes.ylimits = [-1.1, 1.1]
plotaxes.title = 'Pressure'
plotaxes.afteraxes = draw_interface_add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.amr_color = amr_color
plotitem.amr_plotstyle = amr_plotstyle
plotitem.amr_data_show = [1, 1, 1]
plotitem.amr_kwargs = [{
'markersize': 5
}, {
'markersize': 4
}, {
'markersize': 3
}]
# Figure for error
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,2)' # bottom figure
plotaxes.xlimits = xlimits
plotaxes.ylimits = [1e-10, 1]
plotaxes.title = 'abs(Error)'
plotaxes.afteraxes = add_grid
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_semilogy')
plotitem.plot_var = abs_error
plotitem.amr_color = amr_color
plotitem.amr_plotstyle = amr_plotstyle
plotitem.amr_data_show = [1, 1, 1, 1, 1]
plotfigure = plotdata.new_plotfigure(name='Pressure and Error', figno=2)
plotfigure.show = False
plotfigure.kwargs = {'figsize': (12, 8)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,1)' # top figure
plotaxes.xlimits = xlimits
plotaxes.ylimits = [-1.1, 1.1]
plotaxes.title = 'Pressure'
plotaxes.beforeaxes = color_by_level
plotaxes.afteraxes = add_grid #draw_interface_add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
plotitem.plot_var = 0
plotitem.amr_color = amr_color
plotitem.amr_plotstyle = amr_plotstyle
plotitem.amr_data_show = [1, 1, 1]
plotitem.amr_kwargs = [{
'markersize': 5
}, {
'markersize': 4
}, {
'markersize': 3
}]
# Figure for error
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,2)' # bottom figure
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits_error
plotaxes.title = 'abs(Error)'
plotaxes.beforeaxes = error_color_by_level
plotaxes.afteraxes = add_grid
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_semilogy')
plotitem.show = False
plotitem.plot_var = abs_error
plotitem.amr_color = amr_color
plotitem.amr_plotstyle = amr_plotstyle
plotitem.amr_data_show = [1, 1, 1, 1, 1]
def plot_finest(current_data):
from pylab import vstack,contourf,plot,ones,arange,colorbar,\
xlim,ylim,semilogy,figure,title,clf,subplot,show,draw,\
tight_layout,ylabel,grid
fs = current_data.framesoln
t = current_data.t
print('+++ plot_finest at t = %.4f' % t)
pout, level = gridtools1.grid_output_1d(fs, 0, xout, return_level=True)
err = abs(pout - p_true_fcn(xout, t))
Xout = vstack((xout, xout))
L = vstack((level, level))
figure(3, figsize=(12, 8))
clf()
subplot(311)
Yout = vstack((-1.1 * ones(xout.shape), 1.1 * ones(xout.shape)))
contourf(Xout, Yout, L, v_levels, colors=c_levels)
cb = colorbar(ticks=range(1, maxlevels + 1))
cb.set_label('AMR Level')
plot(xout, pout, 'k')
xlim(xlimits)
ylim(-1.1, 1.1)
title('Pressure at t = %.4f' % t)
subplot(312)
Yout = vstack((ylimits_error[0] * ones(xout.shape),
ylimits_error[1] * ones(xout.shape)))
contourf(Xout, Yout, L, v_levels, colors=c_levels)
cb = colorbar(ticks=range(1, maxlevels + 1))
cb.set_label('AMR Level')
semilogy(xout, err, 'k')
if tolerance is not None:
plot(xout, tolerance * ones(xout.shape), 'r--')
xlim(xlimits)
ylim(ylimits_error)
ylabel('abs(error)')
grid(True)
subplot(313)
Yout = vstack(
(0 * ones(xout.shape), (maxlevels + 1) * ones(xout.shape)))
contourf(Xout, Yout, L, v_levels, colors=c_levels)
cb = colorbar(ticks=range(1, maxlevels + 1))
cb.set_label('AMR Level')
plot(xout, level, 'k')
xlim(xlimits)
ylim(0, maxlevels + 1)
ylabel('AMR Level')
tight_layout()
grid(True)
draw()
plotfigure = plotdata.new_plotfigure(name='finest', figno=3)
plotfigure.kwargs = {'figsize': (12, 8)}
plotdata.afterframe = plot_finest
# Figure for inner product, q[2]
plotfigure = plotdata.new_plotfigure(name='Inner Product', figno=10)
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-12, 12]
plotaxes.ylimits = [
-15, 1
] # use when taking inner product with forward solution
#plotaxes.ylimits = [-0.01,0.02] # use when taking inner product with Richardson error
plotaxes.title = 'log10(Inner Product)'
plotaxes.afteraxes = draw_interface_add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = plot_innerprod
plotitem.amr_color = amr_color
plotitem.amr_plotstyle = amr_plotstyle
plotitem.amr_data_show = [0, 1, 1, 1, 0]
plotitem.show = True # show on plot?
# Figure for abs(error)
plotfigure = plotdata.new_plotfigure(name='Error', figno=11)
plotfigure.show = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-12, 12]
plotaxes.ylimits = [-15, 1]
plotaxes.title = 'log10(Error)'
plotaxes.afteraxes = draw_interface_add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 0 #plot_error
plotitem.amr_color = amr_color
plotitem.amr_plotstyle = amr_plotstyle
plotitem.amr_data_show = [1, 1, 1, 1, 1]
plotitem.show = True # show on plot?
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
plotfigure.kwargs = {'figsize': (10, 10)}
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(211)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Pressure'
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(212)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Velocity'
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 1
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='q[0]', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0,1.5]
plotaxes.ylimits = [-2.,4.]
plotaxes.title = 'q[0]'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 0
plotitem.plotstyle = '-'
plotitem.color = 'b'
plotitem.show = True # show on plot?
# Figure for q[1]
plotfigure = plotdata.new_plotfigure(name='q[1]', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'q[1]'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 1
plotitem.plotstyle = '-'
plotitem.color = 'b'
plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
# Reversing time in adjoint output
setadjoint()
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary' # 'ascii', 'binary', 'netcdf'
def fix_plot(current_data):
from pylab import plot
from pylab import xticks,yticks,xlabel,ylabel,savefig,ylim,title
t = current_data.t
plot([0., 0.], [-1000., 1000.], 'k--')
title('Adjoint at t = %5.3f seconds' % t, fontsize=26)
yticks(fontsize=23)
xticks(fontsize=23)
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Adjoint', figno=1)
plotfigure.kwargs = {'figsize': (10,3.5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-12,12]
plotaxes.ylimits = [-0.5,4.3]
plotaxes.title = 'Adjoint'
plotaxes.afteraxes = fix_plot
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.amr_color = 'b'
plotitem.amr_plotstyle = 'o'
plotitem.amr_kwargs = [{'linewidth':2}]
plotitem.amr_kwargs = [{'markersize':4}]
plotitem.outdir = '../../adjoint/_outputReversed'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
def fix_plot(current_data):
from pylab import plot
from pylab import xticks,yticks,xlabel,ylabel,savefig,ylim,title
t = current_data.t
plot([0., 0.], [-1000., 1000.], 'k--')
title('Pressure at t = %5.3f seconds' % t, fontsize=26)
yticks(fontsize=23)
xticks(fontsize=23)
def fix_plot_innerprod(current_data):
from pylab import plot
from pylab import xticks,yticks,xlabel,ylabel,savefig,ylim,title
t = current_data.t
plot([0., 0.], [-1000., 1000.], 'k--')
title('Inner Product at t = %5.3f seconds' % t, fontsize=26)
yticks(fontsize=23)
xticks(fontsize=23)
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Pressure', figno=1)
plotfigure.kwargs = {'figsize': (10,3.5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-12,12]
plotaxes.ylimits = [-1.1,1.1]
plotaxes.title = 'Pressure'
plotaxes.afteraxes = fix_plot
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.amr_color = 'b'
plotitem.amr_plotstyle = 'o'
plotitem.amr_kwargs = [{'linewidth':2}]
plotitem.amr_kwargs = [{'markersize':4}]
# Figure for inner product, q[2]
plotfigure = plotdata.new_plotfigure(name='Inner Product', figno=10)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
#plotaxes.ylimits = [-.5,1.1] # use when taking inner product with forward solution
plotaxes.ylimits = [-0.01,0.02] # use when taking inner product with Richardson error
plotaxes.title = 'Inner Product'
plotaxes.afteraxes = fix_plot_innerprod
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 2
plotitem.amr_color = 'b'
plotitem.amr_plotstyle = 'o'
plotitem.amr_kwargs = [{'linewidth':2}]
plotitem.amr_kwargs = [{'markersize':4}]
plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {
"Gulf": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)
},
"Texas Gulf Coast": {
"xlimits": (-99.2, -94.2),
"ylimits": (26.4, 30.4),
"figsize": (6, 6)
}
}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
#Time Conversions
def days2seconds(days):
return days * 60.0**2 * 24.0
stations = [('8773037', 'Seadrift'), ('8773701', 'Port OConnor'),
('8774230', 'Aransas Wildlife Refuge'),
('8775237', 'Port Aransas'), ('8775296', 'USS Lexington')]
landfall_time = numpy.datetime64('2017-08-25T10:00')
begin_date = datetime.datetime(2017, 8, 24)
end_date = datetime.datetime(2017, 8, 28)
def get_actual_water_levels(station_id):
# Fetch water levels and tide predictions for given station
date_time, water_level, tide = fetch_noaa_tide_data(
station_id, begin_date, end_date)
# Calculate times relative to landfall
seconds_rel_landfall = (date_time - landfall_time) / numpy.timedelta64(
1, 's')
# Subtract tide predictions from measured water levels
water_level -= tide
return seconds_rel_landfall, water_level
def gauge_afteraxes(cd):
station_id, station_name = stations[cd.gaugeno - 1]
seconds_rel_landfall, actual_level = get_actual_water_levels(
station_id)
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
axes.plot(seconds_rel_landfall, actual_level, 'g')
# Fix up plot - in particular fix time labels
axes.set_title(station_name)
axes.set_xlabel('Seconds relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([days2seconds(-1), days2seconds(3)])
axes.set_ylim([-1, 5])
axes.set_xticks([
-days2seconds(-1), 0,
days2seconds(1),
days2seconds(2),
days2seconds(3)
])
#axes.set_xticklabels([r"$-1$", r"$0$", r"$1$", r"$2$", r"$3$"])
#axes.grid(True)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=False)
#Plot for gauge location 1
plotfigure = plotdata.new_plotfigure(name="Gauge Location 1")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Location 1'
plotaxes.scaled = True
plotaxes.xlimits = [-96.83, -96.63]
plotaxes.ylimits = [28.33, 28.43]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#Plot for gauge location 2
plotfigure = plotdata.new_plotfigure(name="Gauge Location 2")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Location 2'
plotaxes.scaled = True
plotaxes.xlimits = [-96.48, -96.28]
plotaxes.ylimits = [28.40, 28.50]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#Plot for gauge location 3
plotfigure = plotdata.new_plotfigure(name="Gauge Location 3")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Location 3'
plotaxes.scaled = True
plotaxes.xlimits = [-96.85, -96.65]
plotaxes.ylimits = [28.17, 28.27]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#Plot for gauge location 4
plotfigure = plotdata.new_plotfigure(name="Gauge Location 4")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Location 4'
plotaxes.scaled = True
plotaxes.xlimits = [-97.15, -96.95]
plotaxes.ylimits = [27.79, 27.89]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#Plot for gauge location 5
plotfigure = plotdata.new_plotfigure(name="Gauge Location 5")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Location 5'
plotaxes.scaled = True
plotaxes.xlimits = [-97.48, -97.28]
plotaxes.ylimits = [27.75, 27.85]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4, 5] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Solution', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [-.6,1.2]
plotaxes.title = 'q'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.amr_color = ['g','b','r']
plotitem.amr_plotstyle = ['^-','s-','o-']
plotitem.amr_data_show = [1,1,1]
plotitem.amr_kwargs = [{'markersize':8},{'markersize':6},{'markersize':5}]
# Plot true solution for comparison:
def plot_qtrue(current_data):
from pylab import plot, legend
x = linspace(0,1,1000)
t = current_data.t
q = qtrue(x,t)
plot(x,q,'k',label='true solution')
def plot_qtrue_with_legend(current_data):
from pylab import plot, legend
x = linspace(0,1,1000)
t = current_data.t
q = qtrue(x,t)
plot(x,q,'k',label='true solution')
try:
from clawpack.visclaw import legend_tools
labels = ['Level 1','Level 2', 'Level 3','True solution']
legend_tools.add_legend(labels, colors=['g','b','r','k'],
markers=['^','s','o',''], linestyles=['','','','-'],
loc='lower right')
except:
legend(loc='lower right')
plotaxes.afteraxes = plot_qtrue_with_legend
# ------------------------------------------
# Figure with each level plotted separately:
plotfigure = plotdata.new_plotfigure(name='By AMR Level', figno=2)
plotfigure.kwargs = {'figsize':(8,10)}
for level in range(1,4):
# Set up plot for this level:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(3,1,%i)' % level
plotaxes.xlimits = [0,1]
plotaxes.ylimits = [-.5,1.3]
plotaxes.title = 'Level %s' % level
plotaxes.afteraxes = plot_qtrue
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.amr_color = ['g','b','r']
plotitem.amr_plotstyle = ['^-','s-','o-']
plotitem.amr_data_show = [0,0,0]
plotitem.amr_data_show[level-1] = 1 # show only one level
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Solution'
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None,
bathy_location=0.15,
bathy_angle=0.0,
bathy_left=-1.0,
bathy_right=-0.2):
"""Setup the plotting data objects.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
returns plotdata object
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
multilayer_data = clawpack.geoclaw.data.MultilayerData()
multilayer_data.read(os.path.join(plotdata.outdir, 'multilayer.data'))
def transform_c2p(x, y, x0, y0, theta):
return ((x + x0) * np.cos(theta) - (y + y0) * np.sin(theta),
(x + x0) * np.sin(theta) + (y + y0) * np.cos(theta))
def transform_p2c(x, y, x0, y0, theta):
return (x * np.cos(theta) + y * np.sin(theta) - x0,
-x * np.sin(theta) + y * np.cos(theta) - y0)
# Setup bathymetry reference lines
with open(os.path.join(plotdata.outdir, "bathy_geometry.data"), 'r') \
as bathy_geometry_file:
bathy_location = float(bathy_geometry_file.readline())
bathy_angle = float(bathy_geometry_file.readline())
x = [0.0, 0.0]
y = [0.0, 1.0]
x1, y1 = transform_c2p(x[0], y[0], bathy_location, 0.0, bathy_angle)
x2, y2 = transform_c2p(x[1], y[1], bathy_location, 0.0, bathy_angle)
if abs(x1 - x2) < 10**-3:
x = [x1, x1]
y = [clawdata.lower[1], clawdata.upper[1]]
else:
m = (y1 - y2) / (x1 - x2)
x[0] = (clawdata.lower[1] - y1) / m + x1
y[0] = clawdata.lower[1]
x[1] = (clawdata.upper[1] - y1) / m + x1
y[1] = clawdata.upper[1]
ref_lines = [((x[0], y[0]), (x[1], y[1]))]
plotdata.clearfigures()
plotdata.save_frames = False
plotdata.format = 'ascii'
# ========================================================================
# Generic helper functions
def pcolor_afteraxes(current_data):
bathy_ref_lines(current_data)
def contour_afteraxes(current_data):
axes = plt.gca()
pos = -80.0 * (23e3 / 180) + 500e3 - 5e3
axes.plot([pos, pos], [-300e3, 300e3], 'b', [pos - 5e3, pos - 5e3],
[-300e3, 300e3], 'y')
wind_contours(current_data)
bathy_ref_lines(current_data)
def profile_afteraxes(current_data):
pass
def bathy_ref_lines(current_data):
axes = plt.gca()
for ref_line in ref_lines:
x1 = ref_line[0][0]
y1 = ref_line[0][1]
x2 = ref_line[1][0]
y2 = ref_line[1][1]
axes.plot([x1, x2], [y1, y2], 'y--', linewidth=1)
# ========================================================================
# Axis limits
xlimits = [-0.5, 0.5]
ylimits = [-0.5, 0.5]
eta = [multilayer_data.eta[0], multilayer_data.eta[1]]
top_surface_limits = [eta[0] - 0.03, eta[0] + 0.03]
internal_surface_limits = [eta[1] - 0.015, eta[1] + 0.015]
top_speed_limits = [0.0, 0.1]
internal_speed_limits = [0.0, 0.03]
# ========================================================================
# Surface Elevations
plotfigure = plotdata.new_plotfigure(name='Surface')
plotfigure.show = True
plotfigure.kwargs = {'figsize': (14, 4)}
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Surface'
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_surface_elevation(plotaxes, 1, bounds=top_surface_limits)
# ml_plot.add_surface_elevation(plotaxes,1,bounds=[-0.06,0.06])
# ml_plot.add_surface_elevation(plotaxes,1)
ml_plot.add_land(plotaxes, 1)
# Bottom surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Internal Surface'
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# ml_plot.add_surface_elevation(plotaxes,2,bounds=[-300-0.5,-300+0.5])
ml_plot.add_surface_elevation(plotaxes, 2, bounds=internal_surface_limits)
# ml_plot.add_surface_elevation(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
# ========================================================================
# Depths
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Depths', figno=42)
plotfigure.show = False
plotfigure.kwargs = {'figsize': (14, 4)}
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Layer Depth'
plotaxes.axescmd = 'subplot(1,2,1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_layer_depth(plotaxes, 1, bounds=[-0.1, 1.1])
ml_plot.add_land(plotaxes, 1)
# Bottom surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Bottom Layer Depth'
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_layer_depth(plotaxes, 2, bounds=[-0.1, 0.7])
ml_plot.add_land(plotaxes, 2)
# ========================================================================
# Water Speed
plotfigure = plotdata.new_plotfigure(name='speed')
plotfigure.show = True
plotfigure.kwargs = {'figsize': (14, 4)}
# Top layer speed
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents - Top Layer'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.afteraxes = pcolor_afteraxes
ml_plot.add_speed(plotaxes, 1, bounds=top_speed_limits)
ml_plot.add_land(plotaxes, 1)
# Bottom layer speed
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Currents - Bottom Layer'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.afteraxes = pcolor_afteraxes
# add_speed(plotaxes,2,bounds=[0.0,1e-10])
ml_plot.add_speed(plotaxes, 2, bounds=internal_speed_limits)
# add_speed(plotaxes,2)
ml_plot.add_land(plotaxes, 2)
# Individual components
plotfigure = plotdata.new_plotfigure(name='speed_components', figno=401)
plotfigure.show = False
plotfigure.kwargs = {'figsize': (14, 14)}
# Top layer
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "X-Velocity - Top Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,1)'
plotaxes.afteraxes = pcolor_afteraxes
# add_x_velocity(plotaxes,1,bounds=[-1e-10,1e-10])
ml_plot.add_x_velocity(plotaxes, 1)
ml_plot.add_land(plotaxes, 1)
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Y-Velocity - Top Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,2)'
plotaxes.afteraxes = pcolor_afteraxes
# add_y_velocity(plotaxes,1,bounds=[-0.000125,0.000125])
ml_plot.add_y_velocity(plotaxes, 1)
ml_plot.add_land(plotaxes, 1)
# Bottom layer
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "X-Velocity - Bottom Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,3)'
plotaxes.afteraxes = pcolor_afteraxes
# add_x_velocity(plotaxes,2,bounds=[-1e-10,1e-10])
ml_plot.add_x_velocity(plotaxes, 2)
ml_plot.add_land(plotaxes, 2)
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Y-Velocity - Bottom Layer"
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.axescmd = 'subplot(2,2,4)'
plotaxes.afteraxes = pcolor_afteraxes
# add_y_velocity(plotaxes,2,bounds=[-0.8e-6,.8e-6])
ml_plot.add_y_velocity(plotaxes, 2)
ml_plot.add_land(plotaxes, 2)
# ========================================================================
# Profile Plots
# Note that these are not currently plotted by default - set
# `plotfigure.show = True` is you want this to be plotted
plotfigure = plotdata.new_plotfigure(name='profile')
plotfigure.show = False
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = xlimits
plotaxes.ylimits = [-1.1, 0.1]
plotaxes.title = "Profile of depth"
plotaxes.afteraxes = profile_afteraxes
slice_index = 30
# Internal surface
def bathy_profile(current_data):
return current_data.x[:, slice_index], b(current_data)[:, slice_index]
def lower_surface(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
eta2(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
eta2(current_data)[slice_index, :]
def upper_surface(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
eta1(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
eta1(current_data)[slice_index, :]
def top_speed(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
water_u1(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
water_u1(current_data)[slice_index, :]
def bottom_speed(current_data):
if multilayer_data.init_type == 2:
return current_data.x[:, slice_index], \
water_u2(current_data)[:, slice_index]
elif multilayer_data.init_type == 6:
return current_data.y[slice_index, :], \
water_u2(current_data)[slice_index, :]
# Bathy
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
plotitem.map_2d_to_1d = bathy_profile
plotitem.plot_var = 0
plotitem.amr_plotstyle = ['-', '+', 'x']
plotitem.color = 'k'
plotitem.show = True
# Internal Interface
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
plotitem.map_2d_to_1d = lower_surface
plotitem.plot_var = 7
plotitem.amr_plotstyle = ['-', '+', 'x']
plotitem.color = 'b'
plotitem.show = True
# Upper Interface
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
plotitem.map_2d_to_1d = upper_surface
plotitem.plot_var = 6
plotitem.amr_plotstyle = ['-', '+', 'x']
plotitem.color = (0.2, 0.8, 1.0)
plotitem.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Y-Velocity'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = pcolor_afteraxes
# Water
# plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
# # plotitem.plot_var = geoplot.surface
# plotitem.plot_var = water_v
# plotitem.pcolor_cmap = colormaps.make_colormap({1.0:'r',0.5:'w',0.0:'b'})
# # plotitem.pcolor_cmin = -1.e-10
# # plotitem.pcolor_cmax = 1.e-10
# # plotitem.pcolor_cmin = -2.5 # -3.0
# # plotitem.pcolor_cmax = 2.5 # 3.0
# plotitem.add_colorbar = True
# plotitem.amr_celledges_show = [0,0,0]
# plotitem.amr_patchedges_show = [1,1,1]
# Land
ml_plot.add_land(plotaxes, 1)
# ========================================================================
# Contour plot for surface
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='contour_surface', figno=15)
plotfigure.show = False
plotfigure.kwargs = {'figsize': (14, 4)}
# Set up for axes in this figure:
# Top Surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Surface'
plotaxes.axescmd = 'subplot(1,2,1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = contour_afteraxes
ml_plot.add_surface_elevation(plotaxes,
plot_type='contour',
surface=1,
bounds=[-2.5, -1.5, -0.5, 0.5, 1.5, 2.5])
ml_plot.add_land(plotaxes, 1, plot_type='contour')
# Internal Surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Internal Surface'
plotaxes.axescmd = 'subplot(1,2,2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = contour_afteraxes
ml_plot.add_surface_elevation(plotaxes,
plot_type='contour',
surface=2,
bounds=[-2.5, -1.5, -0.5, 0.5, 1.5, 2.5])
ml_plot.add_land(plotaxes, 2, plot_type='contour')
# ========================================================================
# Contour plot for speed
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='contour_speed', figno=16)
plotfigure.show = False
plotfigure.kwargs = {'figsize': (14, 4)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Current'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = contour_afteraxes
# Surface
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = ml_plot.water_speed_depth_ave
plotitem.kwargs = {'linewidths': 1}
# plotitem.contour_levels = [1.0,2.0,3.0,4.0,5.0,6.0]
plotitem.contour_levels = [0.5, 1.5, 3, 4.5, 6.0]
plotitem.amr_contour_show = [1, 1, 1]
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.amr_patchedges_show = [1, 1, 1]
plotitem.amr_contour_colors = 'k'
# plotitem.amr_contour_colors = ['r','k','b'] # color on each level
# plotitem.amr_grid_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.show = True
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = geoplot.land
plotitem.contour_nlevels = 40
plotitem.contour_min = 0.0
plotitem.contour_max = 100.0
plotitem.amr_contour_colors = ['g'] # color on each level
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = 0
plotitem.amr_patchedges_show = 0
plotitem.show = True
# ========================================================================
# Grid Cells
# ========================================================================
# Figure for grid cells
plotfigure = plotdata.new_plotfigure(name='cells', figno=2)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.title = 'Grid patches'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.amr_patchedges_show = [1, 1, 1]
# ========================================================================
# Vorticity Plot
# ========================================================================
# plotfigure = plotdata.new_plotfigure(name='vorticity',figno=17)
# plotfigure.show = False
# plotaxes = plotfigure.new_plotaxes()
# plotaxes.title = "Vorticity"
# plotaxes.scaled = True
# plotaxes.xlimits = xlimits
# plotaxes.ylimits = ylimits
# plotaxes.afteraxes = pcolor_afteraxes
#
# # Vorticity
# plotitem = plotaxes.new_plotitem(plot_type='2d_imshow')
# plotitem.plot_var = 9
# plotitem.imshow_cmap = plt.get_cmap('PRGn')
# # plotitem.pcolor_cmap = plt.get_cmap('PuBu')
# # plotitem.pcolor_cmin = 0.0
# # plotitem.pcolor_cmax = 6.0
# plotitem.imshow_cmin = -1.e-2
# plotitem.imshow_cmax = 1.e-2
# plotitem.add_colorbar = True
# plotitem.amr_celledges_show = [0,0,0]
# plotitem.amr_patchedges_show = [1]
#
# # Land
# plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
# plotitem.plot_var = geoplot.land
# plotitem.pcolor_cmap = geoplot.land_colors
# plotitem.pcolor_cmin = 0.0
# plotitem.pcolor_cmax = 80.0
# plotitem.add_colorbar = False
# plotitem.amr_celledges_show = [0,0,0]
# ========================================================================
# Figures for gauges
# Top
plotfigure = plotdata.new_plotfigure(name='Surface & topo',
type='each_gauge',
figno=301)
plotfigure.show = True
plotfigure.clf_each_gauge = True
plotfigure.kwargs = {'figsize': (14, 4)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.xlimits = [0.0, 1.0]
plotaxes.ylimits = top_surface_limits
plotaxes.title = 'Top Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 6
plotitem.plotstyle = 'b-'
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(1, 2, 2)'
plotaxes.xlimits = [0.0, 1.0]
plotaxes.ylimits = internal_surface_limits
plotaxes.title = 'Bottom Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 7
plotitem.plotstyle = 'b-'
# =========================================================================
# Other plots
# Gauge Locations - Enable to see where gauges are located
def locations_afteraxes(current_data, gaugenos='all'):
gaugetools.plot_gauge_locations(current_data.plotdata,
gaugenos=gaugenos,
format_string='kx',
add_labels=True)
pcolor_afteraxes(current_data)
plotfigure = plotdata.new_plotfigure(name='Gauge Locations')
plotfigure.show = False
plotfigure.kwargs = {'figsize': (14, 4)}
# Top surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Top Surface'
plotaxes.axescmd = 'subplot(1, 2, 1)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = locations_afteraxes
ml_plot.add_surface_elevation(plotaxes, 1, bounds=top_surface_limits)
ml_plot.add_land(plotaxes, 1)
# Bottom surface
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Internal Surface'
plotaxes.axescmd = 'subplot(1, 2, 2)'
plotaxes.scaled = True
plotaxes.xlimits = xlimits
plotaxes.ylimits = ylimits
plotaxes.afteraxes = locations_afteraxes
ml_plot.add_surface_elevation(plotaxes, 2, bounds=internal_surface_limits)
ml_plot.add_land(plotaxes, 2)
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for pressure
# -------------------
plotfigure = plotdata.new_plotfigure(name='Pressure', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Pressure'
plotaxes.scaled = True # so aspect ratio is 1
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = colormaps.blue_yellow_red
plotitem.pcolor_cmin = -2.0
plotitem.pcolor_cmax = 2.0
plotitem.add_colorbar = True
# Figure for scatter plot
# -----------------------
plotfigure = plotdata.new_plotfigure(name='scatter', figno=3)
plotfigure.show = (qref_dir
is not None) # don't plot if 1d solution is missing
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0, 1.5]
plotaxes.ylimits = [-2., 4.]
plotaxes.title = 'Scatter plot'
# Set up for item on these axes: scatter of 2d data
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
def p_vs_r(current_data):
# Return radius of each grid cell and p value in the cell
from pylab import sqrt
x = current_data.x
y = current_data.y
r = sqrt(x**2 + y**2)
q = current_data.q
p = q[0, :, :]
return r, p
plotitem.map_2d_to_1d = p_vs_r
plotitem.plot_var = 0
plotitem.plotstyle = 'o'
plotitem.color = 'b'
plotitem.show = (qref_dir is not None) # show on plot?
# Set up for item on these axes: 1d reference solution
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.outdir = qref_dir
plotitem.plot_var = 0
plotitem.plotstyle = '-'
plotitem.color = 'r'
plotitem.kwargs = {'linewidth': 2}
plotitem.show = True # show on plot?
def make_legend(current_data):
import matplotlib.pyplot as plt
plt.legend(('2d data', '1d reference solution'))
plotaxes.afteraxes = make_legend
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for pressure and velocity:
plotfigure = plotdata.new_plotfigure(name='Pressure and Velocity', figno=1)
# Pressure:
# ---------
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,1)' # top figure
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-.5,1.]
plotaxes.title = 'Pressure'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = '-'
plotitem.color = 'b'
# Velocity:
# ---------
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,2)' # bottom figure
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-1.,1.]
plotaxes.title = 'Velocity'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 1
plotitem.plotstyle = '-'
plotitem.color = 'b'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {
"Gulf": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)
},
"Long Island": {
"xlimits": (-74.5, -71.5),
"ylimits": (40, 41.5),
"figsize": (8, 2.7)
}
}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 3.75]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [0, 4]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
# fetch real data
noaaArr = [
"8557380", "8639348", "8662245", "2695540", "8531680", "8510560"
]
gaugeNumber = cd.gaugeno
if (gaugeNumber < 7):
# only looking at gauge 1-6 because rest of data not from NOAA Gauges
realData = geoutil.fetch_noaa_tide_data(
noaaArr[gaugeNumber - 1],
datetime.datetime(2015, 9, 30, hour=12),
datetime.datetime(2015, 10, 6, hour=6))
values = realData[1] - realData[2] # de-tide NOAA data
times = []
for time in realData[0]:
times.append(
(time - numpy.datetime64("2015-10-02T12:00")).astype(float)
/ 1440)
plt.plot(times, values, color="g", label="real")
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 3.75])
axes.set_ylim([0, 4])
axes.set_xticks([-2, -1, 0, 1, 2, 3])
axes.set_xticklabels(
[r"$-2$", r"$-1$", r"$0$", r"$1$", r"$2$", r"$3$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_1_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[1],
format_string='ko',
add_labels=True)
def gauge_2_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[2],
format_string='ko',
add_labels=True)
def gauge_3_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[3],
format_string='ko',
add_labels=True)
def gauge_4_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[4],
format_string='ko',
add_labels=True)
def gauge_5_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[5],
format_string='ko',
add_labels=True)
def gauge_6_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[6],
format_string='ko',
add_labels=True)
def gauge_7_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[8],
format_string='ko',
add_labels=True)
def gauge_8_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos=[9],
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge 1")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 1'
plotaxes.scaled = True
plotaxes.xlimits = [-75.5, -74.75]
plotaxes.ylimits = [38.25, 39.25]
plotaxes.afteraxes = gauge_1_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 2")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 2'
plotaxes.scaled = True
plotaxes.xlimits = [-76.75, -75.5]
plotaxes.ylimits = [36.5, 37.5]
plotaxes.afteraxes = gauge_2_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 3")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 3'
plotaxes.scaled = True
plotaxes.xlimits = [-79.5, -79]
plotaxes.ylimits = [33, 33.5]
plotaxes.afteraxes = gauge_3_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 4")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 4'
plotaxes.scaled = True
plotaxes.xlimits = [-65.25, -64.25]
plotaxes.ylimits = [31.75, 32.5]
plotaxes.afteraxes = gauge_4_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 5")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 5'
plotaxes.scaled = True
plotaxes.xlimits = [-74.5, -73.5]
plotaxes.ylimits = [40, 40.75]
plotaxes.afteraxes = gauge_5_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 6")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 6'
plotaxes.scaled = True
plotaxes.xlimits = [-72.5, -71.5]
plotaxes.ylimits = [40.5, 41.5]
plotaxes.afteraxes = gauge_6_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 7")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 7'
plotaxes.scaled = True
plotaxes.xlimits = [-75.5, -74]
plotaxes.ylimits = [23, 24.5]
plotaxes.afteraxes = gauge_7_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
plotfigure = plotdata.new_plotfigure(name="Gauge 8")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge 8'
plotaxes.scaled = True
plotaxes.xlimits = [-74.75, -73.5]
plotaxes.ylimits = [21.75, 23.25]
plotaxes.afteraxes = gauge_8_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4, 5, 6, 7,
8] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary' # 'ascii', 'binary', 'netcdf'
def draw_interface_add_legend(current_data):
from pylab import plot
plot([0., 0.], [-1000., 1000.], 'k--')
try:
from clawpack.visclaw import legend_tools
labels = ['Level 1','Level 2', 'Level 3']
legend_tools.add_legend(labels, colors=['g','b','r'],
markers=['^','s','o'], linestyles=['','',''],
loc='upper left')
except:
pass
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Adjoint and Velocity', figno=1)
plotfigure.kwargs = {'figsize': (8,8)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,1)' # top figure
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-.5,1.1]
plotaxes.title = 'Adjoint'
plotaxes.afteraxes = draw_interface_add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.amr_color = ['g','b','r']
plotitem.amr_plotstyle = ['^-','s-','o-']
plotitem.amr_data_show = [1,1,1]
plotitem.amr_kwargs = [{'markersize':5},{'markersize':4},{'markersize':3}]
# Figure for q[1]
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,2)' # bottom figure
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-.5,1.1]
plotaxes.title = 'Velocity'
plotaxes.afteraxes = draw_interface_add_legend
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 1
plotitem.amr_color = ['g','b','r']
plotitem.amr_plotstyle = ['^-','s-','o-']
plotitem.amr_data_show = [1,1,1]
plotitem.amr_kwargs = [{'markersize':5},{'markersize':4},{'markersize':3}]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
plotfigure.kwargs = {'figsize': (10,10)}
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(211)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Pressure'
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(212)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Velocity'
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 1
plotitem.plotstyle = 'b-'
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html'
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure with both components
plotfigure = plotdata.new_plotfigure(name='h and hu', figno=0)
plotfigure.kwargs = {'figsize':(6,8)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,1)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [0., 4.5]
plotaxes.title = 'depth h'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 0
plotitem.plotstyle = '-'
plotitem.color = 'b'
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,2)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-2., 6.]
plotaxes.title = 'momentum hu'
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='1d')
plotitem.plot_var = 1
plotitem.plotstyle = '-'
plotitem.color = 'b'
plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
""""""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
# clear any old figures,axes,items data
plotdata.clearfigures()
plotdata.format = 'ascii'
# Load data from output
clawdata = clawutil.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
physics = geodata.GeoClawData()
physics.read(os.path.join(plotdata.outdir, 'geoclaw.data'))
surge_data = geodata.SurgeData()
surge_data.read(os.path.join(plotdata.outdir, 'surge.data'))
friction_data = geodata.FrictionData()
friction_data.read(os.path.join(plotdata.outdir, 'friction.data'))
# Load storm track
track = surgeplot.track_data(os.path.join(plotdata.outdir, 'fort.track'))
# Set afteraxes function
def surge_afteraxes(cd):
surgeplot.surge_afteraxes(cd,
track,
plot_direction=False,
kwargs={"markersize": 4})
# Color limits
surface_limits = [-5.0, 5.0]
speed_limits = [0.0, 3.0]
wind_limits = [0, 64]
pressure_limits = [935, 1013]
friction_bounds = [0.01, 0.04]
def friction_after_axes(cd):
plt.title(r"Manning's $n$ Coefficient")
# ==========================================================================
# Plot specifications
# ==========================================================================
regions = {
"Gulf": {
"xlimits": (clawdata.lower[0], clawdata.upper[0]),
"ylimits": (clawdata.lower[1], clawdata.upper[1]),
"figsize": (6.4, 4.8)
},
"LaTex Shelf": {
"xlimits": (-97.5, -88.5),
"ylimits": (27.5, 30.5),
"figsize": (8, 2.7)
}
}
for (name, region_dict) in regions.items():
# Surface Figure
plotfigure = plotdata.new_plotfigure(name="Surface - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Surface"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# Speed Figure
plotfigure = plotdata.new_plotfigure(name="Currents - %s" % name)
plotfigure.kwargs = {"figsize": region_dict['figsize']}
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = "Currents"
plotaxes.xlimits = region_dict["xlimits"]
plotaxes.ylimits = region_dict["ylimits"]
plotaxes.afteraxes = surge_afteraxes
surgeplot.add_speed(plotaxes, bounds=speed_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['speed'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
#
# Friction field
#
plotfigure = plotdata.new_plotfigure(name='Friction')
plotfigure.show = friction_data.variable_friction and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
# plotaxes.title = "Manning's N Coefficient"
plotaxes.afteraxes = friction_after_axes
plotaxes.scaled = True
surgeplot.add_friction(plotaxes, bounds=friction_bounds, shrink=0.9)
plotaxes.plotitem_dict['friction'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['friction'].colorbar_label = "$n$"
#
# Hurricane Forcing fields
#
# Pressure field
plotfigure = plotdata.new_plotfigure(name='Pressure')
plotfigure.show = surge_data.pressure_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Pressure Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_pressure(plotaxes, bounds=pressure_limits)
surgeplot.add_land(plotaxes)
# Wind field
plotfigure = plotdata.new_plotfigure(name='Wind Speed')
plotfigure.show = surge_data.wind_forcing and True
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = regions['Gulf']['xlimits']
plotaxes.ylimits = regions['Gulf']['ylimits']
plotaxes.title = "Wind Field"
plotaxes.afteraxes = surge_afteraxes
plotaxes.scaled = True
surgeplot.add_wind(plotaxes, bounds=wind_limits)
surgeplot.add_land(plotaxes)
# ========================================================================
# Figures for gauges
# ========================================================================
plotfigure = plotdata.new_plotfigure(name='Gauge Surfaces',
figno=300,
type='each_gauge')
plotfigure.show = True
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2, 1]
# plotaxes.xlabel = "Days from landfall"
# plotaxes.ylabel = "Surface (m)"
plotaxes.ylimits = [-1, 5]
plotaxes.title = 'Surface'
def gauge_afteraxes(cd):
axes = plt.gca()
surgeplot.plot_landfall_gauge(cd.gaugesoln, axes)
# Fix up plot - in particular fix time labels
axes.set_title('Station %s' % cd.gaugeno)
axes.set_xlabel('Days relative to landfall')
axes.set_ylabel('Surface (m)')
axes.set_xlim([-2, 1])
axes.set_ylim([-1, 5])
axes.set_xticks([-2, -1, 0, 1])
axes.set_xticklabels([r"$-2$", r"$-1$", r"$0$", r"$1$"])
axes.grid(True)
plotaxes.afteraxes = gauge_afteraxes
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
# plotitem.plot_var = 3
# plotitem.plotstyle = 'b-'
#
# Gauge Location Plot
#
def gauge_location_afteraxes(cd):
plt.subplots_adjust(left=0.12, bottom=0.06, right=0.97, top=0.97)
surge_afteraxes(cd)
gaugetools.plot_gauge_locations(cd.plotdata,
gaugenos='all',
format_string='ko',
add_labels=True)
plotfigure = plotdata.new_plotfigure(name="Gauge Locations")
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Gauge Locations'
plotaxes.scaled = True
plotaxes.xlimits = [-95.5, -94]
plotaxes.ylimits = [29.0, 30.0]
plotaxes.afteraxes = gauge_location_afteraxes
surgeplot.add_surface_elevation(plotaxes, bounds=surface_limits)
surgeplot.add_land(plotaxes)
plotaxes.plotitem_dict['surface'].amr_patchedges_show = [0] * 10
plotaxes.plotitem_dict['land'].amr_patchedges_show = [0] * 10
# -----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [1, 2, 3, 4] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # parallel plotting
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps, geoplot
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'ascii' # Format of output
# plotdata.format = 'netcdf'
def set_drytol(current_data):
# The drytol parameter is used in masking land and water and
# affects what color map is used for cells with small water depth h.
# The cell will be plotted as dry if h < drytol.
# The best value to use often depends on the application and can
# be set here (measured in meters):
current_data.user['drytol'] = 1.e-2
plotdata.beforeframe = set_drytol
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
#-----------------------------------------
# Figure for pcolor plot
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='pcolor', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = colormaps.make_colormap({
1.0: 'r',
0.5: 'w',
0.0: 'b'
})
plotitem.pcolor_cmin = -0.3
plotitem.pcolor_cmax = 0.3
plotitem.add_colorbar = True
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 2.0
plotitem.add_colorbar = False
plotaxes.xlimits = [-1, 1]
plotaxes.ylimits = [-1, 1]
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [4, 5, 104, 105] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures()
def fixticks1(current_data):
from pylab import ticklabel_format, grid
ticklabel_format(format='plain',useOffset=False)
grid(True)
def fixticks(current_data):
from pylab import ticklabel_format, plot,grid,ones,sqrt, \
legend,title,ylabel,text
ticklabel_format(format='plain',useOffset=False)
# to plot max elevation over entire computation:
#if xmax is not None:
# plot(xmax, etamax, 'r')
#grid(True)
hl = 3200.
hr = 200.
greens = (hl/hr)**(0.25)
print('greens = ',greens)
#plot(current_data.x, greens*ones(current_data.x.shape),'g--')
plot(xlimits,[greens,greens],'g--', label='$C_g$, Greens Law')
ctrans = 2*sqrt(hl)/(sqrt(hl)+sqrt(hr))
crefl = (sqrt(hl)-sqrt(hr))/(sqrt(hl)+sqrt(hr))
print('ctrans = ',ctrans)
plot(xlimits,[ctrans,ctrans],'r--', label='$C_T$, Transmission coefficient')
print('crefl = ',crefl)
plot(xlimits,[crefl,crefl],'m--', label='$C_R$, Reflection coefficient')
legend(loc='upper left')
title('')
ylabel('meters', fontsize=14)
if current_data.frameno == 0:
text(-95,-0.4,'$\longrightarrow$',fontsize=20)
text(-95,-0.6,'Incident')
h = current_data.q[0,:]
mx2 = int(round(len(h)/2.))
etamax2 = (h[:mx2] - hl).max()
print('mx2 = %i, etamax2 = %g' % (mx2,etamax2))
if (current_data.frameno == 5) and (etamax2 > 0.1):
text(-190,-0.5,'$\longleftarrow$',fontsize=20)
text(-190,-0.7,'Reflected')
text(30,-0.5,'$\longrightarrow$',fontsize=20)
text(15,-0.7,'Transmitted')
if (current_data.frameno == 6) and (etamax2 > 0.1):
text(-260,-0.5,'$\longleftarrow$',fontsize=20)
text(-260,-0.7,'Reflected')
text(40,-0.5,'$\longrightarrow$',fontsize=20)
text(25,-0.7,'Transmitted')
elif (current_data.frameno == 6):
text(-20,-0.5,'$\longleftarrow$',fontsize=20)
text(-20,-0.7,'Reflected')
text(70,-0.5,'$\longrightarrow$',fontsize=20)
text(65,-0.7,'Transmitted')
plotfigure = plotdata.new_plotfigure(name='domain', figno=0)
plotfigure.kwargs = {'figsize':(7,6.5)}
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'axes([.1,.4,.8,.5])' #'subplot(211)'
plotaxes.xlimits = xlimits
#plotaxes.xlimits = [-100e3,-20e3]
plotaxes.ylimits = [-1,3]
plotaxes.title = 'Surface displacement'
plotaxes.afteraxes = fixticks
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = geoplot.surface
plotitem.color = 'b'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.color = 'k'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotaxes = plotfigure.new_plotaxes()
plotaxes.show = False
plotaxes.axescmd = 'subplot(312)'
plotaxes.xlimits = xlimits
#plotaxes.xlimits = [-100e3,-20e3]
#plotaxes.ylimits = [-1000, 1000]
#plotaxes.title = 'Full depth'
plotaxes.title = 'momentum'
plotaxes.afteraxes = fixticks1
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem = plotaxes.new_plotitem(plot_type='1d_fill_between')
plotitem.show = False
plotitem.plot_var = geoplot.surface
plotitem.plot_var2 = geoplot.topo
plotitem.color = 'b'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.color = 'k'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 1
plotitem.color = 'k'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'axes([.1,.1,.8,.2])' #'subplot(212)'
plotaxes.xlimits = xlimits
#plotaxes.xlimits = [-100e3,-20e3]
#plotaxes.ylimits = [-1000, 1000]
#plotaxes.title = 'Full depth'
#plotaxes.title = 'topography'
def fix_topo_plot(current_data):
from pylab import title,xlabel
title('')
xlabel('kilometers', fontsize=14)
plotaxes.afteraxes = fix_topo_plot
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
#plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.color = 'k'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
#----------
plotfigure = plotdata.new_plotfigure(name='shore', figno=1)
#plotfigure.kwargs = {'figsize':(9,11)}
plotfigure.show = False
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(211)'
plotaxes.xlimits = [0,80e3]
plotaxes.ylimits = [-4,4]
plotaxes.title = 'Zoom on shelf'
plotaxes.afteraxes = fixticks
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = geoplot.surface
#plotitem = plotaxes.new_plotitem(plot_type='1d_fill_between')
#plotitem.plot_var = geoplot.surface
#plotitem.plot_var2 = geoplot.topo
plotitem.color = 'b'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = geoplot.topo
plotitem.color = 'k'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(212)'
#plotaxes.xlimits = [-2000,2000]
plotaxes.xlimits = [-1000,1000]
#plotaxes.ylimits = [-10,40]
plotaxes.ylimits = [-20,60]
plotaxes.title = 'Zoom around shore'
plotaxes.afteraxes = fixticks
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
plotitem.plot_var = geoplot.surface
plotitem = plotaxes.new_plotitem(plot_type='1d_fill_between')
plotitem.plot_var = geoplot.surface
plotitem.plot_var2 = geoplot.topo
plotitem.color = 'b'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = geoplot.topo
plotitem.color = 'k'
plotitem.MappedGrid = True
plotitem.mapc2p = mapc2p
plotdata.printfigs = True # Whether to output figures
plotdata.print_format = 'png' # What type of output format
plotdata.print_framenos = 'all' # Which frames to output
plotdata.print_fignos = 'all' # Which figures to print
plotdata.html = True # Whether to create HTML files
plotdata.latex = False # Whether to make LaTeX output
plotdata.parallel = True
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from numpy import linspace
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
plotfigure.kwargs = {'figsize': (8, 5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
def fixup(current_data):
import pylab
addgauges(current_data)
t = current_data.t
t = t / 3600. # hours
pylab.title('Surface at %4.2f hours' % t, fontsize=20)
pylab.grid(True)
#pylab.xticks(fontsize=15)
#pylab.yticks(fontsize=15)
plotaxes.afteraxes = fixup
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = colormaps.red_white_blue #geoplot.tsunami_colormap
plotitem.pcolor_cmin = sea_level - 0.1
plotitem.pcolor_cmax = sea_level + 0.1
plotitem.add_colorbar = False
#plotitem.colorbar_shrink = 0.5
plotitem.colorbar_shrink = 1.0
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
plotaxes.xlimits = [-230, -115]
plotaxes.ylimits = [0, 65]
# add contour lines of bathy if desired:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = linspace(-3000, -3000, 1)
plotitem.amr_contour_colors = ['y'] # color on each level
plotitem.kwargs = {'linestyles': 'solid', 'linewidths': 2}
plotitem.amr_contour_show = [1, 0, 0]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
#-----------------------------------------
# Figure for adjoint
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Adjoint ', figno=20)
plotfigure.kwargs = {'figsize': (8, 5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('adjoint')
plotaxes.scaled = True
plotaxes.title = 'Adjoint flag'
def fixup(current_data):
import pylab
addgauges(current_data)
t = current_data.t
t = t / 3600. # hours
pylab.title('Adjoint flag at %4.2f hours' % t, fontsize=20)
pylab.grid(True)
plotaxes.afteraxes = fixup
adj_flag_tol = 0.000001
def masked_inner_product(current_data):
from numpy import ma
q = current_data.q
soln = ma.masked_where(q[4, :, :] < adj_flag_tol, q[4, :, :])
return soln
def masked_regions(current_data):
from numpy import ma
q = current_data.q
soln = ma.masked_where(q[4, :, :] < 1e9, q[4, :, :])
return soln
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 4 #masked_inner_product
plotitem.pcolor_cmap = colormaps.white_red
plotitem.pcolor_cmin = 0.5 * adj_flag_tol
plotitem.pcolor_cmax = 6 * adj_flag_tol
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0]
plotitem.amr_data_show = [1, 1, 0, 0, 0, 0, 0]
plotitem.patchedges_show = 0
#plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = masked_regions
#plotitem.pcolor_cmap = colormaps.white_blue
#plotitem.pcolor_cmin = 9e9
#plotitem.pcolor_cmax = 1.1e10
#plotitem.add_colorbar = False
#plotitem.amr_celledges_show = [0]
#plotitem.amr_data_show = [1,1,0,0]
#plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
plotaxes.xlimits = [-230, -115]
plotaxes.ylimits = [0, 65]
#-----------------------------------------
# Figure for levels
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Grid patches', figno=10)
plotfigure.kwargs = {'figsize': (8, 5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Grid patches'
plotaxes.scaled = True
def aa_patches(current_data):
import pylab
pylab.ticklabel_format(format='plain', useOffset=False)
pylab.xticks([180, 200, 220, 240], rotation=20, fontsize=28)
pylab.yticks(fontsize=28)
t = current_data.t
t = t / 3600. # hours
pylab.title('Grids patches at %4.2f hours' % t, fontsize=20)
a = pylab.gca()
a.set_aspect(1. / pylab.cos(41.75 * pylab.pi / 180.))
pylab.grid(True)
def fixup(current_data):
import pylab
addgauges(current_data)
t = current_data.t
t = t / 3600. # hours
pylab.title('Grids patches at %4.2f hours' % t, fontsize=20)
pylab.grid(True)
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = [[1, 1, 1], [0.8, 0.8, 0.8], [0.8, 1, 0.8],
[1, .7, .7], [0.6, 0.6, 1]]
plotitem.amr_patchedges_color = ['k', 'k', 'g', 'r', 'b']
plotitem.amr_celledges_show = [0]
plotitem.amr_patchedges_show = [0, 1, 1, 1, 1]
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0]
plotitem.amr_patchedges_show = [0]
plotaxes.afteraxes = fixup
plotaxes.xlimits = [-230, -115]
plotaxes.ylimits = [0, 65]
#-----------------------------------------
# Zoom
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Crescent City', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.afteraxes = fixup
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = sea_level - 0.1
plotitem.pcolor_cmax = sea_level + 0.1
plotitem.add_colorbar = True
#plotitem.colorbar_shrink = 0.5
plotitem.colorbar_shrink = 1.0
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
######## Limits below encompass Crescent City
plotaxes.xlimits = [-127, -123.5]
plotaxes.ylimits = [40.5, 44.5]
#-----------------------------------------
# Zoom2
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Crescent City Zoomed', figno=2)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
plotaxes.afteraxes = fixup
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = sea_level - 0.1
plotitem.pcolor_cmax = sea_level + 0.1
plotitem.add_colorbar = True
#plotitem.colorbar_shrink = 0.5
plotitem.colorbar_shrink = 1.0
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = 0
######## Limits below encompass Crescent City zoomed area
plotaxes.xlimits = [-124.235, -124.143]
plotaxes.ylimits = [41.716, 41.783]
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface at gauges', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [9.5 * 3600, 15 * 3600]
plotaxes.ylimits = [-3, 3]
plotaxes.title = 'Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# Plot topo as green curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
def gaugetopo(current_data):
q = current_data.q
h = q[0, :]
eta = q[3, :]
topo = eta - h
return topo
plotitem.plot_var = gaugetopo
plotitem.plotstyle = 'g-'
def add_zeroline(current_data):
from pylab import plot, legend, xticks, floor, axis, xlabel
t = current_data.t
gaugeno = current_data.gaugeno
plot(t, 0 * t, 'k')
n = int(floor(t.max() / 3600.) + 2)
#xticks([3600*i for i in range(n)], ['%i' % i for i in range(n)])
xticks([3600 * i for i in range(9, n)],
['%i' % i for i in range(9, n)])
xlabel('time (hours)')
plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for pressure
# -------------------
plotfigure = plotdata.new_plotfigure(name='Pressure', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Pressure'
plotaxes.scaled = True # so aspect ratio is 1
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = colormaps.blue_yellow_red
plotitem.pcolor_cmin = -2.0
plotitem.pcolor_cmax = 2.0
plotitem.add_colorbar = True
# Figure for scatter plot
# -----------------------
plotfigure = plotdata.new_plotfigure(name='scatter', figno=3)
plotfigure.show = (qref_dir is not None) # don't plot if 1d solution is missing
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0,1.5]
plotaxes.ylimits = [-2.,4.]
plotaxes.title = 'Scatter plot'
# Set up for item on these axes: scatter of 2d data
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
def p_vs_r(current_data):
# Return radius of each grid cell and p value in the cell
from pylab import sqrt
x = current_data.x
y = current_data.y
r = sqrt(x**2 + y**2)
q = current_data.q
p = q[0,:,:]
return r,p
plotitem.map_2d_to_1d = p_vs_r
plotitem.plot_var = 0
plotitem.plotstyle = 'o'
plotitem.color = 'b'
plotitem.show = (qref_dir is not None) # show on plot?
# Set up for item on these axes: 1d reference solution
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.outdir = qref_dir
plotitem.plot_var = 0
plotitem.plotstyle = '-'
plotitem.color = 'r'
plotitem.kwargs = {'linewidth': 2}
plotitem.show = True # show on plot?
def make_legend(current_data):
import matplotlib.pyplot as plt
plt.legend(('2d data', '1d reference solution'))
plotaxes.afteraxes = make_legend
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.html_movie = 'JSAnimation' # new style, or "4.x" for old style
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata):
#--------------------------
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
# -------------------------------------------------------------------------
# Plot figures
# -------------------------------------------------------------------------
plotdata.clearfigures() # clear any old figures,axes,items data
# Figure for q[0]
plotfigure = plotdata.new_plotfigure(name='Height', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-100, 500]
plotaxes.ylimits = [0.975, 1.15]
plotaxes.title = 'Height'
# Set up for item on these axes:
# plotaxes.afteraxes = plot_exact_1
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = '-o'
plotitem.color = 'b'
# plotitem.show = True # show on plot?
# # Plot linear solution
# plotitem = plotaxes.new_plotitem(name='line2',plot_type='1d_plot')
# plotitem.outdir = '../../../ex_linear_swe/linear_swe/_output'
# plotitem.plot_var = 0
# plotitem.plotstyle = '-'
# plotitem.color = 'r'
# plotitem.show = True # show on plot?
plotfigure = plotdata.new_plotfigure(name='Velocity', figno=2)
plotaxes = plotfigure.new_plotaxes()
# plotaxes.axescmd = 'subplot(2,1,2)'
plotaxes.xlimits = 'auto'
plotaxes.ylimits = [-1, 3]
plotaxes.title = 'Solution q(2)'
#plotaxes.afteraxes = plot_exact_2
# Set up for item on these axes:
# q = current_data.q
# h = q[0]
# u = q[1]/q[0]
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 1
plotitem.plotstyle = '-o'
plotitem.color = 'b'
# plotitem.show = True # show on plot?
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = [1] # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = False # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from numpy import linspace
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
plotdata.format = 'binary'
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
def timeformat(t):
from numpy import mod
hours = int(t/3600.)
tmin = mod(t,3600.)
min = int(tmin/60.)
sec = int(mod(tmin,60.))
timestr = '%s:%s:%s' % (hours,str(min).zfill(2),str(sec).zfill(2))
return timestr
def title_hours(current_data):
from pylab import title
t = current_data.t
timestr = timeformat(t)
title('%s after earthquake' % timestr)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface', figno=0)
plotfigure.kwargs = {'figsize':(8,5)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.title = 'Surface'
plotaxes.scaled = False # need to set aspect ratio properly for lat/long
def aa(current_data):
from pylab import ticklabel_format, xticks, gca, cos, pi, savefig
gca().set_aspect(1./cos(48*pi/180.))
title_hours(current_data)
ticklabel_format(useOffset=False)
xticks(rotation=20)
plotaxes.afteraxes = aa
#plotaxes.xlimits = [-122.7,-122.16]
#plotaxes.ylimits = [47.2,48.3]
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = cmin
plotitem.pcolor_cmax = cmax
plotitem.add_colorbar = True
plotitem.colorbar_shrink = 0.8
plotitem.amr_celledges_show = [0]
#plotitem.celledges_show = 0
#plotitem.patchedges_show = 0
plotitem.amr_patchedges_show = [0]
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = cmax_land
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0]
plotitem.patchedges_show = 0
#-----------------------------------------
# Figure for zoom on Eagle Harbor
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name="fgmax region", figno=11)
#plotfigure.show = False
plotfigure.kwargs = {'figsize': (9,6)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.scaled = False
plotaxes.xlimits = [-122.55,-122.48]
plotaxes.ylimits = [47.61,47.64]
if bg_image:
plotaxes.beforeaxes = background_image
plotaxes.afteraxes = aa
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = cmin
plotitem.pcolor_cmax = cmax
plotitem.add_colorbar = True
plotitem.amr_data_show = [0,0,1] # only show on finest
plotitem.amr_celledges_show = [0,0,0]
plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.show = False
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = cmax_land
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0]
plotitem.patchedges_show = 0
# add contour lines of bathy if desired:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
#plotitem.show = False
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = [0]
plotitem.amr_contour_colors = ['yellow'] # color on each level
plotitem.kwargs = {'linestyles':'solid','linewidths':2}
plotitem.amr_contour_show = [0,0,1]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
#-----------------------------------------
# Figure for zoom on Bainbridge / Seattle
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name="Bainbridge", figno=12)
# not needed for this small domain
plotfigure.show = False
plotfigure.kwargs = {'figsize': (9,6)}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.scaled = False
plotaxes.xlimits = [-122.65, -122.3]
plotaxes.ylimits = [47.5, 47.76]
plotaxes.afteraxes = aa
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
#plotitem.plot_var = geoplot.surface
plotitem.plot_var = geoplot.surface_or_depth
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = cmin
plotitem.pcolor_cmax = cmax
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = cmax_land
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0]
plotitem.patchedges_show = 0
#-----------------------------------------
# Figures for gauges
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='gauge plot', figno=300, \
type='each_gauge')
plotfigure.kwargs = {'figsize': (11,6)}
#plotfigure.clf_each_gauge = False
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,1)'
#plotaxes.ylimits = [-1,10]
plotaxes.title = 'Flow depth'
plotaxes.time_scale = 1./60.
plotaxes.time_label = ''
def add_ylabel_depth(current_data):
from pylab import ylabel, grid
ylabel('water depth (m)')
grid(True)
plotaxes.afteraxes = add_ylabel_depth
# Plot depth as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 0
plotitem.plotstyle = 'b-'
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.axescmd = 'subplot(2,1,2)'
#plotaxes.ylimits = [-1,10]
plotaxes.title = 'Flow speed (m/s)'
plotaxes.time_scale = 1./60.
plotaxes.time_label = 'minutes'
def add_ylabel_speed(current_data):
from pylab import ylabel, tight_layout, grid
ylabel('speed (m/s)')
grid(True)
tight_layout()
plotaxes.afteraxes = add_ylabel_speed
def speed(current_data):
from numpy import sqrt, maximum
q = current_data.q
h = q[0,:]
hu = q[1,:]
hv = q[2,:]
s = sqrt(hu**2 + hv**2) / maximum(h,0.001)
return s
# Plot depth as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = speed
plotitem.plotstyle = 'b-'
#-----------------------------------------
# Figures for fgmax plots
#-----------------------------------------
# Note: need to move fgmax png files into _plots after creating with
# python run_process_fgmax.py
# This just creates the links to these figures...
if 0:
otherfigure = plotdata.new_otherfigure(name='max depth',
fname='depth.png')
otherfigure = plotdata.new_otherfigure(name='max speed',
fname='speed.png')
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
from numpy import linspace
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
# Import data objects
clawdata = data.ClawInputData(2)
clawdata.read(os.path.join(plotdata.outdir, 'claw.data'))
# To plot gauge locations on pcolor or contour plot, use this as
# an afteraxis function:
def addgauges(current_data):
from clawpack.visclaw import gaugetools
gaugetools.plot_gauge_locations(current_data.plotdata, \
gaugenos='all', format_string='ko', add_labels=True)
#-----------------------------------------
# Figure for surface
#-----------------------------------------
extents = {
"Full Domain": {
'extent': [
clawdata.lower[0], clawdata.upper[0], clawdata.lower[1],
clawdata.upper[1]
],
'show_contours':
False,
'show_patches': [1, 1, 1, 1],
'figsize': (6.4, 4.8)
},
"Zoom 1": {
'extent': init_region,
'show_contours': True,
'show_patches': 0,
'figsize': (6.4 * 2.0, 4.8)
}
}
for (name, param_dict) in extents.items():
plotfigure = plotdata.new_plotfigure(name='Surface %s' % name)
plotfigure.kwargs['figsize'] = param_dict['figsize']
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
# plotitem.plot_var = geoplot.surface
plotitem.plot_var = surface_or_depth
# plotitem.plot_var = 0
plotitem.pcolor_cmap = surface_cmap
plotitem.pcolor_cmin = -10.0
plotitem.pcolor_cmax = 10.0
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0, 0, 0, 0]
plotitem.patchedges_show = param_dict['show_patches']
# Bathy contour
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.show = param_dict['show_contours']
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = numpy.arange(5000, 6000, 25)
plotitem.amr_contour_colors = ['k'] # color on each level
plotitem.kwargs = {'linestyles': 'solid', 'linewidths': 1}
plotitem.amr_contour_show = [0, 0, 0, 1]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.show = param_dict['show_contours']
plotitem.plot_var = geoplot.topo
plotitem.contour_levels = numpy.arange(4000, 5000, 25)
plotitem.amr_contour_colors = ['k'] # color on each level
plotitem.kwargs = {'linestyles': 'dashed', 'linewidths': 1}
plotitem.amr_contour_show = [0, 0, 0, 1]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 4800
plotitem.pcolor_cmax = 5005
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.patchedges_show = param_dict['show_patches']
plotaxes.xlimits = param_dict['extent'][:2]
plotaxes.ylimits = param_dict['extent'][2:]
def draw_rect(rect, axes, style="r--"):
"""rect = [xlower, ylower, xupper, yupper"""
xlower = rect[0]
xupper = rect[1]
ylower = rect[2]
yupper = rect[3]
axes.plot([xlower, xupper], [ylower, ylower], style)
axes.plot([xupper, xupper], [ylower, yupper], style)
axes.plot([xupper, xlower], [yupper, yupper], style)
axes.plot([xlower, xlower], [yupper, ylower], style)
def afteraxes(cd):
addgauges(cd)
draw_rect([491000, 493700, 3085250, 3086250], plt.gca())
plotaxes.afteraxes = afteraxes
# -----------------------------------------
# Figures for gauges
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name='Surface at gauges', figno=300, \
type='each_gauge')
plotfigure.clf_each_gauge = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Surface'
# Plot surface as blue curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.plot_var = 3
plotitem.plotstyle = 'b-'
# Plot topo as green curve:
plotitem = plotaxes.new_plotitem(plot_type='1d_plot')
plotitem.show = False
# def gaugetopo(current_data):
# q = current_data.q
# h = q[0,:]
# eta = q[3,:]
# topo = eta - h
# return topo
# plotitem.plot_var = gaugetopo
# plotitem.plotstyle = 'g-'
# def add_zeroline(current_data):
# from pylab import plot, legend, xticks, floor, axis, xlabel
# t = current_data.t
# gaugeno = current_data.gaugeno
# if gaugeno == 32412:
# try:
# plot(TG32412[:,0], TG32412[:,1], 'r')
# legend(['GeoClaw','Obs'],loc='lower right')
# except: pass
# axis((0,t.max(),-0.3,0.3))
# plot(t, 0*t, 'k')
# n = int(floor(t.max()/3600.) + 2)
# xticks([3600*i for i in range(n)], ['%i' % i for i in range(n)])
# xlabel('time (hours)')
# plotaxes.afteraxes = add_zeroline
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = 'all' # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
def setplot(plotdata=None):
# --------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of clawpack.visclaw.data.ClawPlotData.
Output: a modified version of plotdata.
"""
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
from clawpack.visclaw import colormaps, geoplot
plotdata.clearfigures() # clear any old figures,axes,items data
# -----------------------------------------
# Figure for pcolor plot
# -----------------------------------------
def change_fonts(current_data):
pylab.xticks(fontsize=21, fontname="Tex Gyre Pagella")
pylab.yticks(fontsize=21, fontname="Tex Gyre Pagella")
"Fill the step area with a black rectangle."
import matplotlib.pyplot as plt
rectangle = plt.Rectangle((x1, y1), 0.4, 0.4, color="k", fill=True)
plt.gca().add_patch(rectangle)
plt.rcParams['font.family'] = 'Tex Gyre Pagella'
plt.rcParams['font.size'] = 15
t = current_data.t
plt.title("Depth at time t = %10.4e" % t, fontsize=16)
def change_fonts2(current_data):
pylab.xticks(fontsize=17, fontname="Tex Gyre Pagella")
pylab.yticks(fontsize=17, fontname="Tex Gyre Pagella")
# # "Fill the step area with a black rectangle."
# import matplotlib.pyplot as plt
# rectangle = plt.Rectangle((x1,y1),0.4,0.4,color="k",fill=True)
# plt.gca().add_patch(rectangle)
# plt.rcParams['font.family'] = 'Tex Gyre Pagella'
# plt.rcParams['font.size'] = 14
# t = current_data.t
# plt.title("Depth at time t = %10.4e" % t, fontsize=16)
def change_fonts3(current_data):
pylab.xticks(fontsize=17, fontname="Tex Gyre Pagella")
pylab.yticks(fontsize=17, fontname="Tex Gyre Pagella")
# "Fill the step area with a black rectangle."
import matplotlib.pyplot as plt
rectangle = plt.Rectangle((x1, y1), 0.4, 0.4, color="k", fill=True)
plt.gca().add_patch(rectangle)
plt.rcParams['font.family'] = 'Tex Gyre Pagella'
plt.rcParams['font.size'] = 14
t = current_data.t
plt.title("Momentum at time t = %10.4e" % t, fontsize=16)
plotfigure = plotdata.new_plotfigure(name='q[0]', figno=0)
plotfigure.kwargs = {'figsize': [10, 10], 'facecolor': 'white'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Depth Contour'
plotaxes.scaled = False
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = geoplot.tsunami_colormap # not the default colormap
plotitem.pcolor_cmin = 0.00
plotitem.pcolor_cmax = 2.80 * hn
plotitem.add_colorbar = True
plotitem.celledges_show = 0
plotitem.patchedges_show = 1
plotitem.show = True # show on plot?
plotaxes.afteraxes = change_fonts
# -----------------------------------------
# Figure for zoomed-in pcolor plot
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q[0]_zoomed', figno=1)
plotfigure.kwargs = {'figsize': [10, 10], 'facecolor': 'white'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [9.4, domain_x]
plotaxes.ylimits = [-domain_y / 2.0, domain_y / 2.0]
plotaxes.title = 'Zoomed-in Depth Contour'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 0
plotitem.pcolor_cmap = geoplot.tsunami_colormap # not the default colormap
plotitem.pcolor_cmin = 0.00
plotitem.pcolor_cmax = 5.00 * hn
plotitem.add_colorbar = True
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True # show on plot?
plotaxes.afteraxes = change_fonts2
# -----------------------------------------
# Figure for momentum pcolor plot
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name='q[1]', figno=2)
plotfigure.kwargs = {'figsize': [10, 10], 'facecolor': 'white'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'qx Contour'
plotaxes.scaled = False
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = 1
plotitem.pcolor_cmap = geoplot.tsunami_colormap # not the default colormap
plotitem.pcolor_cmin = 0.00
plotitem.pcolor_cmax = 'auto'
plotitem.add_colorbar = True
plotitem.celledges_show = 0
plotitem.patchedges_show = 1
plotitem.show = True # show on plot?
plotaxes.afteraxes = change_fonts3
# -----------------------------------------
# Figure for cross section at y=0
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name='cross-section', figno=3)
plotfigure.kwargs = {'figsize': [10, 10], 'facecolor': 'white'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [0.0, domain_x]
plotaxes.ylimits = [0.0, hn * 14.0]
plotaxes.title = 'Cross section at y=0'
def plot_topo_xsec(current_data):
from pylab import plot, cos, sin, where, legend, nan
t = current_data.t
x = np.linspace(0.0, domain_x, 201)
#y = 0.
B = where(x > 40.0, where(x < 40.40, 7.0, 0.0), 0.0)
plot(x, B, 'g', label="internal walls")
legend()
pylab.legend(fontsize=18)
pylab.xticks(fontsize=18, fontname="Tex Gyre Pagella")
pylab.yticks(fontsize=18, fontname="Tex Gyre Pagella")
t = current_data.t
pylab.title("Run-up at time t = %10.4e" % t, fontsize=16)
plotaxes.afteraxes = plot_topo_xsec
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
def xsec(current_data):
# Return x value and surface depth at this point, along y=0
from pylab import where, ravel
x = current_data.x
y = ravel(current_data.y)
dy = current_data.dy
q = current_data.q
ij = where((y <= dy / 1.) & (y > -dy / 1.))
x_slice = ravel(x)[ij]
ij1 = where((x_slice > 40.40) | (x_slice < 40.0))
x_slice = x_slice[ij1]
depth_slice = ravel(q[0, :, :])[ij]
depth_slice = depth_slice[ij1]
return x_slice, depth_slice
plotitem.map_2d_to_1d = xsec
plotitem.plotstyle = 'k-o' # need to be able to set amr_plotstyle
plotitem.kwargs = {'markersize': 4}
# -----------------------------------------
# Figure for amr patches
# -----------------------------------------
# Figure for grid cells
plotfigure = plotdata.new_plotfigure(name='cells', figno=4)
plotfigure.kwargs = {'figsize': [10, 10], 'facecolor': 'white'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Grid patches'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = [0, 0, 0]
plotitem.amr_patchedges_show = [1]
# -----------------------------------------
# Figure for contour lines
# -----------------------------------------
plotfigure = plotdata.new_plotfigure(name='contour', figno=5)
plotfigure.kwargs = {'figsize': [15, 15], 'facecolor': 'white'}
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = 'auto'
plotaxes.ylimits = 'auto'
plotaxes.title = 'Contour lines'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = 0
plotitem.contour_levels = np.linspace(0.2 * hn, 10 * hn, 50)
plotitem.amr_contour_colors = ['r', 'g', 'b'] # color on each level
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotaxes.afteraxes = change_fonts3
# Parameters used only when creating html and/or latex hardcopy
# e.g., via clawpack.visclaw.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
# plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
return plotdata
def setplot(plotdata=None):
#--------------------------
"""
Specify what is to be plotted at each frame.
Input: plotdata, an instance of pyclaw.plotters.data.ClawPlotData.
Output: a modified version of plotdata.
"""
from clawpack.visclaw import colormaps, geoplot
if plotdata is None:
from clawpack.visclaw.data import ClawPlotData
plotdata = ClawPlotData()
plotdata.clearfigures() # clear any old figures,axes,items data
def set_drytol(current_data):
# The drytol parameter is used in masking land and water and
# affects what color map is used for cells with small water depth h.
# The cell will be plotted as dry if h < drytol.
# The best value to use often depends on the application and can
# be set here (measured in meters):
current_data.user["drytol"] = 1.e-3
plotdata.beforeframe = set_drytol
#-----------------------------------------
# Figure for pcolor plot
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='pcolor', figno=0)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes('pcolor')
plotaxes.title = 'Surface'
plotaxes.scaled = True
# Water
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.surface
plotitem.pcolor_cmap = geoplot.tsunami_colormap
plotitem.pcolor_cmin = -0.1
plotitem.pcolor_cmax = 0.1
plotitem.add_colorbar = True
plotitem.amr_celledges_show = [0,0,0]
plotitem.patchedges_show = 1
# Land
plotitem = plotaxes.new_plotitem(plot_type='2d_pcolor')
plotitem.plot_var = geoplot.land
plotitem.pcolor_cmap = geoplot.land_colors
plotitem.pcolor_cmin = 0.0
plotitem.pcolor_cmax = 100.0
plotitem.add_colorbar = False
plotitem.amr_celledges_show = [0,0,0]
plotitem.patchedges_show = 1
plotaxes.xlimits = [-2,2]
plotaxes.ylimits = [-2,2]
# Add contour lines of bathymetry:
plotitem = plotaxes.new_plotitem(plot_type='2d_contour')
plotitem.plot_var = geoplot.topo
from numpy import arange, linspace
plotitem.contour_levels = linspace(-.1, 0.5, 20)
plotitem.amr_contour_colors = ['k'] # color on each level
plotitem.kwargs = {'linestyles':'solid'}
plotitem.amr_contour_show = [1]
plotitem.celledges_show = 0
plotitem.patchedges_show = 0
plotitem.show = True
#-----------------------------------------
# Figure for cross section
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='cross-section', figno=1)
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,2]
plotaxes.ylimits = [-0.15,0.3]
plotaxes.title = 'Cross section at y=0'
def plot_topo_xsec(current_data):
from pylab import plot, cos,sin,where,legend,nan
t = current_data.t
x = linspace(-2,2,201)
y = 0.
B = h0*(x**2 + y**2)/a**2 - h0
eta1 = sigma*h0/a**2 * (2.*x*cos(omega*t) + 2.*y*sin(omega*t) -sigma)
etatrue = where(eta1>B, eta1, nan)
plot(x, etatrue, 'r', label="true solution", linewidth=2)
plot(x, B, 'g', label="bathymetry")
## plot([0],[-1],'kx',label="Level 1") # shouldn't show up in plots,
## plot([0],[-1],'bo',label="Level 2") # but will produced desired legend
plot([0],[-1],'bo',label="Computed") ## need to fix plotstyle
legend()
plotaxes.afteraxes = plot_topo_xsec
plotitem = plotaxes.new_plotitem(plot_type='1d_from_2d_data')
def xsec(current_data):
# Return x value and surface eta at this point, along y=0
from pylab import find,ravel
x = current_data.x
y = current_data.y
dy = current_data.dy
q = current_data.q
ij = find((y <= dy/2.) & (y > -dy/2.))
x_slice = ravel(x)[ij]
eta_slice = ravel(q[3,:,:])[ij]
return x_slice, eta_slice
plotitem.map_2d_to_1d = xsec
plotitem.plotstyle = 'kx' ## need to be able to set amr_plotstyle
plotitem.kwargs = {'markersize':3}
plotitem.amr_show = [1] # plot on all levels
#-----------------------------------------
# Figure for grids alone
#-----------------------------------------
plotfigure = plotdata.new_plotfigure(name='grids', figno=2)
plotfigure.show = True
# Set up for axes in this figure:
plotaxes = plotfigure.new_plotaxes()
plotaxes.xlimits = [-2,2]
plotaxes.ylimits = [-2,2]
plotaxes.title = 'grids'
plotaxes.scaled = True
# Set up for item on these axes:
plotitem = plotaxes.new_plotitem(plot_type='2d_patch')
plotitem.amr_patch_bgcolor = ['#ffeeee', '#eeeeff', '#eeffee']
plotitem.amr_celledges_show = [1,1,0]
plotitem.amr_patchedges_show = [1]
#-----------------------------------------
# Parameters used only when creating html and/or latex hardcopy
# e.g., via pyclaw.plotters.frametools.printframes:
plotdata.printfigs = True # print figures
plotdata.print_format = 'png' # file format
plotdata.print_framenos = 'all' # list of frames to print
plotdata.print_gaugenos = [] # list of gauges to print
plotdata.print_fignos = 'all' # list of figures to print
plotdata.html = True # create html files of plots?
plotdata.html_homelink = '../README.html' # pointer for top of index
plotdata.latex = True # create latex file of plots?
plotdata.latex_figsperline = 2 # layout of plots
plotdata.latex_framesperline = 1 # layout of plots
plotdata.latex_makepdf = False # also run pdflatex?
plotdata.parallel = True # make multiple frame png's at once
return plotdata
