def test_calc_sector_total_impact(self):
"""Test running total impact calculations."""
sup = SupplyChain()
sup.read_wiod16(year='test',
range_rows=(5, 117),
range_cols=(4, 116),
col_iso3=2,
col_sectors=1)
# Tropical cyclone over Florida and Caribbean
hazard = Hazard('TC')
hazard.read_mat(HAZ_TEST_MAT)
# Read demo entity values
# Set the entity default file to the demo one
exp = Exposures()
exp.read_hdf5(EXP_DEMO_H5)
exp.check()
exp.gdf.region_id = 840 #assign right id for USA
exp.assign_centroids(hazard)
impf_tc = IFTropCyclone()
impf_tc.set_emanuel_usa()
impf_set = ImpactFuncSet()
impf_set.append(impf_tc)
impf_set.check()
sup.calc_sector_direct_impact(hazard, exp, impf_set)
sup.calc_indirect_impact(io_approach='ghosh')
sup.calc_total_impact()
self.assertAlmostEqual((sup.years.shape[0], sup.mriot_data.shape[0]),
sup.total_impact.shape)
self.assertAlmostEqual((sup.mriot_data.shape[0], ),
sup.total_aai_agg.shape)
def test_EU(self):
"""test with demo data containing France and Germany"""
bbox = [-5, 42, 16, 55]
haz = RelativeCropyield()
haz.set_from_single_run(input_dir=INPUT_DIR,
yearrange=(2001, 2005),
bbox=bbox,
ag_model='lpjml',
cl_model='ipsl-cm5a-lr',
scenario='historical',
soc='2005soc',
co2='co2',
crop='whe',
irr='noirr',
fn_str_var=FN_STR_DEMO)
hist_mean = haz.calc_mean(yearrange_mean=(2001, 2005))
haz.set_rel_yield_to_int(hist_mean)
haz.centroids.set_region_id()
exp = CropProduction()
exp.set_from_single_run(input_dir=INPUT_DIR,
filename=FILENAME_LU,
hist_mean=FILENAME_MEAN,
bbox=bbox,
yearrange=(2001, 2005),
scenario='flexible',
unit='t',
crop='whe',
irr='firr')
exp.set_to_usd(INPUT_DIR)
exp.assign_centroids(haz, threshold=20)
if_cp = ImpactFuncSet()
if_def = IFRelativeCropyield()
if_def.set_relativeyield()
if_cp.append(if_def)
if_cp.check()
impact = Impact()
impact.calc(exp.loc[exp.region_id == 276],
if_cp,
haz.select(['2002']),
save_mat=True)
exp_manual = exp.value.loc[exp.region_id == 276].values
impact_manual = haz.select(event_names=['2002'],
reg_id=276).intensity.multiply(exp_manual)
dif = (impact_manual - impact.imp_mat).data
self.assertEqual(haz.tag.haz_type, 'RC')
self.assertEqual(haz.size, 5)
self.assertEqual(haz.centroids.size, 1092)
self.assertAlmostEqual(haz.intensity.mean(), -2.0489097e-08)
self.assertAlmostEqual(exp.value.max(), 53074789.755290434)
self.assertEqual(exp.latitude.values.size, 1092)
self.assertAlmostEqual(exp.value[3], 0.0)
self.assertAlmostEqual(exp.value[1077], 405026.6857207429)
self.assertAlmostEqual(impact.imp_mat.data[3], -176102.5359452465)
self.assertEqual(len(dif), 0)
def irma_percen(irma_tc_s, irma_tc_n, exp_s, exp_n):
""" Plot irma damage in % in lesser antilles and TCA. """
if_exp = ImpactFuncSet()
if_em = IFTropCyclone()
if_em.set_emanuel_usa()
if_exp.append(if_em)
fig, axs = plt.subplots(1,
2,
figsize=(16, 20),
subplot_kw=dict(projection=ccrs.PlateCarree()),
squeeze=True,
sharex=False,
sharey=False)
for idx, axis in enumerate(axs.flatten()):
grid = axis.gridlines(draw_labels=True, alpha=0.2)
grid.xlabels_top = grid.ylabels_right = False
grid.xformatter = LONGITUDE_FORMATTER
grid.yformatter = LATITUDE_FORMATTER
# south
plot_percen(irma_tc_s, exp_s, if_exp, axs[0])
# nord
im = plot_percen(irma_tc_n, exp_n, if_exp, axs[1])
plt.subplots_adjust(wspace=0.14)
fig.subplots_adjust(right=0.88)
cbar_ax = fig.add_axes([0.885, 0.4285, 0.03, 0.148])
fig.colorbar(im, cax=cbar_ax, orientation='vertical', label='% Damage')
return fig
def iffl():
""" Define impact functions """
if_1m = IF_FL_1m()
if_fl = ImpactFuncSet()
if_fl.tag.description = '1m step function'
if_fl.append(if_1m)
return if_fl
def test_EU_nan(self):
"""Test whether setting the zeros in exp.value to NaN changes the impact"""
bbox = [0, 42, 10, 52]
haz = RelativeCropyield()
haz.set_from_isimip_netcdf(input_dir=INPUT_DIR,
yearrange=(2001, 2005),
bbox=bbox,
ag_model='lpjml',
cl_model='ipsl-cm5a-lr',
scenario='historical',
soc='2005soc',
co2='co2',
crop='whe',
irr='noirr',
fn_str_var=FN_STR_DEMO)
hist_mean = haz.calc_mean(yearrange_mean=(2001, 2005))
haz.set_rel_yield_to_int(hist_mean)
haz.centroids.set_region_id()
exp = CropProduction()
exp.set_from_isimip_netcdf(input_dir=INPUT_DIR,
filename=FILENAME_LU,
hist_mean=FILENAME_MEAN,
bbox=bbox,
yearrange=(2001, 2005),
scenario='flexible',
unit='t/y',
crop='whe',
irr='firr')
exp.assign_centroids(haz, threshold=20)
impf_cp = ImpactFuncSet()
impf_def = ImpfRelativeCropyield()
impf_def.set_relativeyield()
impf_cp.append(impf_def)
impf_cp.check()
impact = Impact()
impact.calc(exp, impf_cp, haz, save_mat=True)
exp_nan = CropProduction()
exp_nan.set_from_isimip_netcdf(input_dir=INPUT_DIR,
filename=FILENAME_LU,
hist_mean=FILENAME_MEAN,
bbox=[0, 42, 10, 52],
yearrange=(2001, 2005),
scenario='flexible',
unit='t/y',
crop='whe',
irr='firr')
exp_nan.gdf.value[exp_nan.gdf.value == 0] = np.nan
exp_nan.assign_centroids(haz, threshold=20)
impact_nan = Impact()
impact_nan.calc(exp_nan, impf_cp, haz, save_mat=True)
self.assertListEqual(list(impact.at_event), list(impact_nan.at_event))
self.assertAlmostEqual(12.056545220060798, impact_nan.aai_agg)
self.assertAlmostEqual(12.056545220060798, impact.aai_agg)
def impf_dem(x_paa=1, x_mdd=1):
impf = ImpactFunc()
impf.haz_type = 'TC'
impf.id = 1
impf.intensity_unit = 'm/s'
impf.intensity = np.linspace(0, 150, num=100)
impf.mdd = np.repeat(1, len(impf.intensity)) * x_mdd
impf.paa = np.arange(0, len(impf.intensity)) / len(impf.intensity) * x_paa
impf.check()
impf_set = ImpactFuncSet()
impf_set.append(impf)
return impf_set
def calib_instance(hazard,
exposure,
impact_func,
df_out=pd.DataFrame(),
yearly_impact=False):
""" calculate one impact instance for the calibration algorithm and write
to given DataFrame
Parameters:
hazard: hazard set instance
exposure: exposure set instance
impact_func: impact function instance
Optional Parameters:
df_out: Output DataFrame with headers of columns defined and optionally with
first row (index=0) defined with values. If columns "impact",
"event_id", or "year" are not included, they are created here.
Data like reported impacts or impact function parameters can be
given here; values are preserved.
yearly_impact (boolean): if set True, impact is returned per year,
not per event
Returns:
df_out: DataFrame with modelled impact written to rows for each year
or event.
"""
IFS = ImpactFuncSet()
IFS.append(impact_func)
impacts = Impact()
impacts.calc(exposure, IFS, hazard)
if yearly_impact: # impact per year
IYS = impacts.calc_impact_year_set(all_years=True)
# Loop over whole year range:
for cnt_, year in enumerate(np.sort(list((IYS.keys())))):
if cnt_ > 0:
df_out.loc[cnt_] = df_out.loc[0] # copy info from first row
if year in IYS:
df_out.loc[cnt_, 'impact'] = IYS[year]
else:
df_out.loc[cnt_, 'impact'] = 0
df_out.loc[cnt_, 'year'] = year
else: # impact per event
for cnt_, impact in enumerate(impacts.at_event):
if cnt_ > 0:
df_out.loc[cnt_] = df_out.loc[0] # copy info from first row
df_out.loc[cnt_, 'impact'] = impact
df_out.loc[cnt_, 'event_id'] = int(impacts.event_id[cnt_])
df_out.loc[cnt_, 'event_name'] = impacts.event_name[cnt_]
df_out.loc[cnt_, 'year'] = \
dt.datetime.fromordinal(impacts.date[cnt_]).year
return df_out
def test_Forecast_calc_properties(self):
"""Test calc and propety functions from the Forecast class"""
#hazard
haz = StormEurope()
haz.read_cosmoe_file(
HAZ_DIR.joinpath('storm_europe_cosmoe_forecast_vmax_testfile.nc'),
run_datetime=dt.datetime(2018, 1, 1),
event_date=dt.datetime(2018, 1, 3))
#exposure
data = {}
data['latitude'] = haz.centroids.lat
data['longitude'] = haz.centroids.lon
data['value'] = np.ones_like(data['latitude']) * 100000
data['deductible'] = np.zeros_like(data['latitude'])
data[INDICATOR_IMPF + 'WS'] = np.ones_like(data['latitude'])
data['region_id'] = np.ones_like(data['latitude'], dtype=int) * 756
expo = Exposures(gpd.GeoDataFrame(data=data))
#vulnerability
#generate vulnerability
impact_function = ImpfStormEurope()
impact_function.set_welker()
impact_function_set = ImpactFuncSet()
impact_function_set.append(impact_function)
#create and calculate Forecast
forecast = Forecast({dt.datetime(2018, 1, 1): haz}, expo,
impact_function_set)
forecast.calc()
# test
self.assertEqual(len(forecast.run_datetime), 1)
self.assertEqual(forecast.run_datetime[0], dt.datetime(2018, 1, 1))
self.assertEqual(forecast.event_date, dt.datetime(2018, 1, 3))
self.assertEqual(forecast.lead_time().days, 2)
self.assertEqual(forecast.summary_str(),
'WS_NWP_run2018010100_event20180103_Switzerland')
self.assertAlmostEqual(forecast.ai_agg(), 26.347, places=1)
self.assertAlmostEqual(forecast.ei_exp()[1], 7.941, places=1)
self.assertEqual(len(forecast.hazard), 1)
self.assertIsInstance(forecast.hazard[0], StormEurope)
self.assertIsInstance(forecast.exposure, Exposures)
self.assertIsInstance(forecast.vulnerability, ImpactFuncSet)
def plot_right(irma_tc, exp, ax, scale_pos, plot_line=False):
""" Plot irma damage in USD. """
if_exp = ImpactFuncSet()
if_em = IFTropCyclone()
if_em.set_emanuel_usa()
if_exp.append(if_em)
imp_irma = Impact()
imp_irma.calc(exp, if_exp, irma_tc)
extent = [
exp.longitude.min() - BUFFER_DEG,
exp.longitude.max() + BUFFER_DEG,
exp.latitude.min() - BUFFER_DEG,
exp.latitude.max() + BUFFER_DEG
]
ax.set_extent((extent))
u_plot.add_shapes(ax)
sel_pos = np.argwhere(imp_irma.eai_exp > 0)[:, 0]
hex_bin = ax.hexbin(imp_irma.coord_exp[sel_pos, 1],
imp_irma.coord_exp[sel_pos, 0],
C=imp_irma.eai_exp[sel_pos],
reduce_C_function=np.average,
transform=ccrs.PlateCarree(),
gridsize=2000,
norm=LogNorm(vmin=MIN_VAL, vmax=MAX_VAL),
cmap='YlOrRd',
vmin=MIN_VAL,
vmax=MAX_VAL)
ax.set_title('')
ax.grid(False)
add_cntry_names(ax, extent)
scale_bar(ax, scale_pos, 10)
if plot_line:
x1, y1 = [-64.57, -64.82], [18.28, 18.47]
ax.plot(x1, y1, linewidth=1.0, color='grey', linestyle='--')
return hex_bin
def calc_imp(expo_dict, tc_dict, data_dir):
""" Compute impacts of TCs in every island group. """
try:
abs_path = os.path.join(data_dir, 'imp_isl.p')
with open(abs_path, 'rb') as f:
imp_dict = pickle.load(f)
print('Loaded imp_isl:', len(imp_dict))
except FileNotFoundError:
if_exp = ImpactFuncSet()
if_em = IFTropCyclone()
if_em.set_emanuel_usa()
if_exp.append(if_em)
imp_dict = dict()
for isl_iso in expo_dict:
imp = Impact()
imp.calc(expo_dict[isl_iso], if_exp, tc_dict[isl_iso])
imp_dict[isl_iso] = imp
save(os.path.join(data_dir, 'imp_isl.p'), imp_dict)
return imp_dict
def flood_imp_func_set():
"""Builds impact function set for river flood, using standard files"""
if_set = ImpactFuncSet()
if_africa = IFRiverFlood()
if_africa.set_RF_IF_Africa()
if_set.append(if_africa)
if_asia = IFRiverFlood()
if_asia.set_RF_IF_Asia()
if_set.append(if_asia)
if_europe = IFRiverFlood()
if_europe.set_RF_IF_Europe()
if_set.append(if_europe)
if_na = IFRiverFlood()
if_na.set_RF_IF_NorthAmerica()
if_set.append(if_na)
if_oceania = IFRiverFlood()
if_oceania.set_RF_IF_Oceania()
if_set.append(if_oceania)
if_sa = IFRiverFlood()
if_sa.set_RF_IF_SouthAmerica()
if_set.append(if_sa)
return if_set
#d.set_file_path(file_path_spei) """Setup the hazard""" new_haz = d.setup() """Plot intensity of one year event""" # new_haz.plot_intensity_drought(event='2003') """Initialize Impact function""" dr_if = ImpactFuncSet() if_def = IFDrought() """set impact function: for min: set_default; for sum-thr: set_default_sumthr; for sum: set_default_sum""" #if_def.set_default() #if_def.set_default_sumthr() if_def.set_default_sum() dr_if.append(if_def) """Initialize Exposure""" exposure_agrar = SpamAgrar() exposure_agrar.init_spam_agrar(country='CHE') """If intensity def is not default, exposure has to be adapted""" """In case of sum-thr: 'if_DR_sumthr', in case of sum:'if_DR_sum' """ #exposure_agrar['if_DR_sumthr'] = np.ones(exposure_agrar.shape[0]) exposure_agrar['if_DR_sum'] = np.ones(exposure_agrar.shape[0]) """Initialize impact of the drought""" imp_drought = Impact() """Calculate Damage for a specific event""" imp_drought.calc(exposure_agrar, dr_if, new_haz)
haz_real.check()
haz_synth.check()
if plot_img:
haz_real.plot_intensity(event=0)
haz_real.plot_fraction(event=0)
#%% Impact_function
# Set impact function (see tutorial climada_entity_ImpactFuncSet)
ifset_hail = ImpactFuncSet()
for imp_fun_dict in imp_fun_parameter:
imp_fun = fct.create_impact_func(haz_type, imp_fun_dict["imp_id"],
imp_fun_dict["L"], imp_fun_dict["x_0"],
imp_fun_dict["k"])
ifset_hail.append(imp_fun)
ifset_hail.plot()
#%% Exposure
exp_infr = fct.load_exp_infr(force_new_hdf5_generation, name_hdf5_file,
input_folder, haz_real)
exp_meshs = fct.load_exp_agr(force_new_hdf5_generation, name_hdf5_file,
input_folder, haz_real)
exp_dur = exp_meshs.copy()
exp_dur["if_HL"] = exp_dur[
"if_HL"] + 3 #change if_HL to match the corresponding imp_id
if plot_img:
exp_infr.plot_basemap()
#This takes to long. Do over night!!!
#exp_agr.plot_basemap()
def calib_instance(hazard,
exposure,
impact_func,
df_out=pd.DataFrame(),
yearly_impact=False,
return_cost='False'):
"""calculate one impact instance for the calibration algorithm and write
to given DataFrame
Parameters
----------
hazard : Hazard
exposure : Exposure
impact_func : ImpactFunc
df_out : Dataframe, optional
Output DataFrame with headers of columns defined and optionally with
first row (index=0) defined with values. If columns "impact",
"event_id", or "year" are not included, they are created here.
Data like reported impacts or impact function parameters can be
given here; values are preserved.
yearly_impact : boolean, optional
if set True, impact is returned per year, not per event
return_cost : str, optional
if not 'False' but any of 'R2', 'logR2',
cost is returned instead of df_out
Returns
-------
df_out: DataFrame
DataFrame with modelled impact written to rows for each year
or event.
"""
IFS = ImpactFuncSet()
IFS.append(impact_func)
impacts = Impact()
impacts.calc(exposure, IFS, hazard)
if yearly_impact: # impact per year
IYS = impacts.calc_impact_year_set(all_years=True)
# Loop over whole year range:
if df_out.empty | df_out.index.shape[0] == 1:
for cnt_, year in enumerate(np.sort(list((IYS.keys())))):
if cnt_ > 0:
df_out.loc[cnt_] = df_out.loc[
0] # copy info from first row
if year in IYS:
df_out.loc[cnt_, 'impact_CLIMADA'] = IYS[year]
else:
df_out.loc[cnt_, 'impact_CLIMADA'] = 0.0
df_out.loc[cnt_, 'year'] = year
else:
years_in_common = df_out.loc[
df_out['year'].isin(np.sort(list((IYS.keys())))), 'year']
for cnt_, year in years_in_common.iteritems():
df_out.loc[df_out['year'] == year,
'impact_CLIMADA'] = IYS[year]
else: # impact per event
if df_out.empty | df_out.index.shape[0] == 1:
for cnt_, impact in enumerate(impacts.at_event):
if cnt_ > 0:
df_out.loc[cnt_] = df_out.loc[
0] # copy info from first row
df_out.loc[cnt_, 'impact_CLIMADA'] = impact
df_out.loc[cnt_, 'event_id'] = int(impacts.event_id[cnt_])
df_out.loc[cnt_, 'event_name'] = impacts.event_name[cnt_]
df_out.loc[cnt_, 'year'] = \
dt.datetime.fromordinal(impacts.date[cnt_]).year
df_out.loc[cnt_, 'date'] = impacts.date[cnt_]
elif df_out.index.shape[0] == impacts.at_event.shape[0]:
for cnt_, (impact,
ind) in enumerate(zip(impacts.at_event, df_out.index)):
df_out.loc[ind, 'impact_CLIMADA'] = impact
df_out.loc[ind, 'event_id'] = int(impacts.event_id[cnt_])
df_out.loc[ind, 'event_name'] = impacts.event_name[cnt_]
df_out.loc[ind, 'year'] = \
dt.datetime.fromordinal(impacts.date[cnt_]).year
df_out.loc[ind, 'date'] = impacts.date[cnt_]
else:
raise ValueError('adding simulated impacts to reported impacts not'
' yet implemented. use yearly_impact=True or run'
' without init_impact_data.')
if not return_cost == 'False':
df_out = calib_cost_calc(df_out, return_cost)
return df_out
def test_Forecast_plot(self):
"""Test cplotting functions from the Forecast class"""
#hazard
haz1 = StormEurope()
haz1.read_cosmoe_file(
HAZ_DIR.joinpath('storm_europe_cosmoe_forecast_vmax_testfile.nc'),
run_datetime=dt.datetime(2018, 1, 1),
event_date=dt.datetime(2018, 1, 3))
haz1.centroids.lat += 0.6
haz1.centroids.lon -= 1.2
haz2 = StormEurope()
haz2.read_cosmoe_file(
HAZ_DIR.joinpath('storm_europe_cosmoe_forecast_vmax_testfile.nc'),
run_datetime=dt.datetime(2018, 1, 1),
event_date=dt.datetime(2018, 1, 3))
haz2.centroids.lat += 0.6
haz2.centroids.lon -= 1.2
#exposure
data = {}
data['latitude'] = haz1.centroids.lat
data['longitude'] = haz1.centroids.lon
data['value'] = np.ones_like(data['latitude']) * 100000
data['deductible'] = np.zeros_like(data['latitude'])
data[INDICATOR_IMPF + 'WS'] = np.ones_like(data['latitude'])
data['region_id'] = np.ones_like(data['latitude'], dtype=int) * 756
expo = Exposures(gpd.GeoDataFrame(data=data))
#vulnerability
#generate vulnerability
impact_function = ImpfStormEurope()
impact_function.set_welker()
impact_function_set = ImpactFuncSet()
impact_function_set.append(impact_function)
#create and calculate Forecast
forecast = Forecast(
{
dt.datetime(2018, 1, 2): haz1,
dt.datetime(2017, 12, 31): haz2
}, expo, impact_function_set)
forecast.calc()
#test plotting functions
forecast.plot_imp_map(run_datetime=dt.datetime(2017, 12, 31),
save_fig=False,
close_fig=True)
forecast.plot_hist(run_datetime=dt.datetime(2017, 12, 31),
save_fig=False,
close_fig=True)
forecast.plot_exceedence_prob(run_datetime=dt.datetime(2017, 12, 31),
threshold=5000,
save_fig=False,
close_fig=True)
#create a file containing the polygons of Swiss cantons using natural earth
cantons_file = CONFIG.local_data.save_dir.dir() / 'CHE_cantons.shp'
adm1_shape_file = shapereader.natural_earth(
resolution='10m',
category='cultural',
name='admin_1_states_provinces')
if not cantons_file.exists():
with fiona.open(adm1_shape_file, 'r') as source:
with fiona.open(cantons_file, 'w', **source.meta) as sink:
for f in source:
if f['properties']['adm0_a3'] == 'CHE':
sink.write(f)
forecast.plot_warn_map(
str(cantons_file),
decision_level='polygon',
thresholds=[100000, 500000, 1000000, 5000000],
probability_aggregation='mean',
area_aggregation='sum',
title="Building damage warning",
explain_text="warn level based on aggregated damages",
save_fig=False,
close_fig=True)
forecast.plot_warn_map(
str(cantons_file),
decision_level='exposure_point',
thresholds=[1, 1000, 5000, 5000000],
probability_aggregation=0.2,
area_aggregation=0.2,
title="Building damage warning",
explain_text="warn level based on aggregated damages",
run_datetime=dt.datetime(2017, 12, 31),
save_fig=False,
close_fig=True)
forecast.plot_hexbin_ei_exposure()
plt.close()
with self.assertRaises(ValueError):
forecast.plot_warn_map(
str(cantons_file),
decision_level='test_fail',
probability_aggregation=0.2,
area_aggregation=0.2,
title="Building damage warning",
explain_text="warn level based on aggregated damages",
save_fig=False,
close_fig=True)
plt.close()
with self.assertRaises(ValueError):
forecast.plot_warn_map(
str(cantons_file),
decision_level='exposure_point',
probability_aggregation='test_fail',
area_aggregation=0.2,
title="Building damage warning",
explain_text="warn level based on aggregated damages",
save_fig=False,
close_fig=True)
plt.close()
with self.assertRaises(ValueError):
forecast.plot_warn_map(
str(cantons_file),
decision_level='exposure_point',
probability_aggregation=0.2,
area_aggregation='test_fail',
title="Building damage warning",
explain_text="warn level based on aggregated damages",
save_fig=False,
close_fig=True)
plt.close()
def call_impact_functions(with_without_error):
"""get curve for the impact function:
Parameters:
with_without_error (bool): rather to give best estimate or to add a random variation. Default: True
Returns: climada impact functions set
"""
# get the data from the studies:
directory_if = '../../input_data/impact_functions/'
file_low = pd.read_csv(''.join([directory_if, 'impact_low.csv']))
function_low = impact_functions_random(file_low, 'low', with_without_error)
file_moderate = pd.read_csv(''.join([directory_if, 'impact_moderate.csv']))
function_moderate = impact_functions_random(file_moderate, 'moderate',
with_without_error)
file_high = pd.read_csv(''.join([directory_if, 'impact_high.csv']))
function_high = impact_functions_random(file_high, 'high',
with_without_error)
# make impact function set:
if_heat_set = ImpactFuncSet()
x = np.linspace(20, 40, num=30)
if_heat1 = ImpactFunc()
if_heat1.haz_type = 'heat'
if_heat1.id = 1
if_heat1.name = 'low physical activity'
if_heat1.intensity_unit = 'Degrees C'
if_heat1.intensity = x
if_heat1.mdd = (sigmoid(x, *function_low)) / 100
if_heat1.mdd[if_heat1.mdd < 0] = 0 # to avoid having negative values
if_heat1.mdd[if_heat1.mdd > 100] = 100 # to avoid having values over a 100
if_heat1.paa = np.linspace(1, 1, num=30)
if_heat_set.append(if_heat1)
if_heat2 = ImpactFunc()
if_heat2.haz_type = 'heat'
if_heat2.id = 2
if_heat2.name = 'medium physical activity'
if_heat2.intensity_unit = 'Degrees C'
if_heat2.intensity = x
if_heat2.mdd = (sigmoid(x, *function_moderate)) / 100
if_heat2.mdd[if_heat2.mdd < 0] = 0
if_heat2.mdd[if_heat2.mdd > 100] = 100
if_heat2.paa = np.linspace(1, 1, num=30)
if_heat_set.append(if_heat2)
if_heat3 = ImpactFunc()
if_heat3.haz_type = 'heat'
if_heat3.id = 3
if_heat3.name = 'high physical activity'
if_heat3.intensity_unit = 'Degrees C'
if_heat3.intensity = x
if_heat3.mdd = (sigmoid(x, *function_high)) / 100
if_heat3.mdd[if_heat3.mdd < 0] = 0
if_heat3.mdd[if_heat3.mdd > 100] = 100
if_heat3.paa = np.linspace(1, 1, num=30)
if_heat_set.append(if_heat3)
return if_heat_set
def calc_sector_direct_impact(self):
"""Test running direct impact calculations."""
sup = SupplyChain()
sup.read_wiod16(year='test',
range_rows=(5, 117),
range_cols=(4, 116),
col_iso3=2,
col_sectors=1)
# Tropical cyclone over Florida and Caribbean
hazard = Hazard('TC')
hazard.read_mat(HAZ_TEST_MAT)
# Read demo entity values
# Set the entity default file to the demo one
exp = Exposures()
exp.read_hdf5(EXP_DEMO_H5)
exp.check()
exp.gdf.region_id = 840 #assign right id for USA
exp.assign_centroids(hazard)
impf_tc = IFTropCyclone()
impf_tc.set_emanuel_usa()
impf_set = ImpactFuncSet()
impf_set.append(impf_tc)
impf_set.check()
subsecs = list(range(10)) + list(range(15, 25))
sup.calc_sector_direct_impact(hazard,
exp,
impf_set,
selected_subsec=subsecs)
self.assertAlmostEqual((sup.years.shape[0], sup.mriot_data.shape[0]),
sup.direct_impact.shape)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual((sup.mriot_data.shape[0], ),
sup.direct_aai_agg.shape)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual(sup.reg_dir_imp[0], 'USA')
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, subsecs].sum(),
places=3)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[subsecs].sum(),
places=3)
sup.calc_sector_direct_impact(hazard,
exp,
impf_set,
selected_subsec='manufacturing')
self.assertAlmostEqual((sup.years.shape[0], sup.mriot_data.shape[0]),
sup.direct_impact.shape)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual((sup.mriot_data.shape[0], ),
sup.direct_aai_agg.shape)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual(sup.reg_dir_imp[0], 'USA')
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, range(4, 23)].sum(),
places=3)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[range(4, 23)].sum(),
places=3)
sup.calc_sector_direct_impact(hazard,
exp,
impf_set,
selected_subsec='agriculture')
self.assertAlmostEqual((sup.years.shape[0], sup.mriot_data.shape[0]),
sup.direct_impact.shape)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual((sup.mriot_data.shape[0], ),
sup.direct_aai_agg.shape)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, range(0, 1)].sum(),
places=3)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[range(0, 1)].sum(),
places=3)
sup.calc_sector_direct_impact(hazard,
exp,
impf_set,
selected_subsec='mining')
self.assertAlmostEqual((sup.years.shape[0], sup.mriot_data.shape[0]),
sup.direct_impact.shape)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual((sup.mriot_data.shape[0], ),
sup.direct_aai_agg.shape)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, range(3, 4)].sum(),
places=3)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[range(3, 4)].sum(),
places=3)
sup.calc_sector_direct_impact(hazard,
exp,
impf_set,
selected_subsec='service')
self.assertAlmostEqual((sup.years.shape[0], sup.mriot_data.shape[0]),
sup.direct_impact.shape)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual((sup.mriot_data.shape[0], ),
sup.direct_aai_agg.shape)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[sup.reg_pos['USA']].sum(),
places=3)
self.assertAlmostEqual(sup.direct_impact.sum(),
sup.direct_impact[:, range(26, 56)].sum(),
places=3)
self.assertAlmostEqual(sup.direct_aai_agg.sum(),
sup.direct_aai_agg[range(26, 56)].sum(),
places=3)
def make_Y(parameter, *args):
"""
Score function for Optimization process.
Multiple scoring options are present (spearman, pearson, RMSE, RMSF)
Parameters
----------
parameter : np.ndarray
array containing parameter that are optimized.
*args :
imp_fun_parameter: dict
Contains ind and Parameter for Impact function
exp: climada.entity.exposures.base.Exposures
CLIMADA Expusure.
haz: climada.hazard.base.Hazard
CLIMADA hazard
haz_type: str
Type of Hazard ("HL")
num_fct: int
number of Impact functions ([1,3])
Returns
-------
score: float
Variable that is minimizes by optimization. Mulitple variables possible.
"""
# *args = imp_fun_parameter, exp, agr, haz_type
# a = time.perf_counter()
parameter_optimize, exp, haz, haz_type, num_fct, score_type, type_imp_fun = args
ifset_hail = ImpactFuncSet()
if type_imp_fun == "sig":
if num_fct ==1:
parameter_optimize[0]["L"] = parameter[0]
parameter_optimize[0]["x_0"] = parameter[1]
parameter_optimize[0]["k"] = parameter[2]
else:
parameter_optimize[0]["L"] = parameter[0]
parameter_optimize[0]["x_0"] = parameter[1]
parameter_optimize[0]["k"] = parameter[2]
parameter_optimize[1]["L"] = parameter[3]
parameter_optimize[1]["x_0"] = parameter[4]
parameter_optimize[1]["k"] = parameter[5]
parameter_optimize[2]["L"] = parameter[6]
parameter_optimize[2]["x_0"] = parameter[7]
parameter_optimize[2]["k"] = parameter[8]
# b = time.perf_counter()
# print("time to write parameter_optimize: ", b-a)
for imp_fun_dict in parameter_optimize:
imp_fun = create_impact_func(haz_type,
imp_fun_dict["imp_id"],
imp_fun_dict["L"],
imp_fun_dict["x_0"],
imp_fun_dict["k"])
ifset_hail.append(imp_fun)
elif type_imp_fun == "lin":
parameter_optimize[0]["m"] = parameter[0]
imp_fun = create_impact_func_lin(haz_type,
parameter_optimize[0]["imp_id"],
m = parameter[0])
ifset_hail.append(imp_fun)
c = time.perf_counter()
# print("time to make imp_fun: ", c-b)
imp = Impact()
# imp.calc(self = imp, exposures = exp, impact_funcs = ifset_hail, hazard = haz, save_mat = True)
imp.calc(exp, ifset_hail, haz, save_mat = False)
d = time.perf_counter()
print("time to calc impact: ", d-c)
Y = list(imp.calc_impact_year_set(year_range = [2002, 2019]).values())
all_eq = 0
#very stupid bugfix. Ther where problem when all y values where 0,
#so this test if this is the case and changes the last value if so
for count, y in enumerate(Y):
if y==0:
all_eq += 1
Y[count] = 0.1
if all_eq == len(Y):
Y[-1] = 0.2
Y_norm = np.divide(Y, min(Y))
Observ = [27.48, 46.14, 80.67, 76.80, 32.66, 62.47, 26.30, 110.60, 13.01,
34.53, 21.50, 71.77, 22.80, 19.84, 17.50, 35.80, 24.40, 33.30]
O_norm = np.divide(Observ, min(Observ))
# res = mean_squared_error(Y_norm, O_norm)**0.5
rmsf = RMSF(Y_norm, O_norm)
rmse = mean_squared_error(O_norm, Y_norm)
print("XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX")
print("Params {}".format(parameter_optimize))
print("The sum of the new Impact is: {}".format(sum(Y)))
spear_coef, spear_p_value = spearmanr(O_norm, Y_norm)
print("spearman for agr (score, p_value) = ({}, {})".format(spear_coef, spear_p_value))
pears_coef, pears_p_value = stats.pearsonr(O_norm, Y_norm)
print("pearson for agr (score, p_value) = ({}, {})".format(pears_coef, pears_p_value))
print("RMSF: ", rmsf)
print("RMSE", rmse)
print("XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX")
# e= time.perf_counter()
# print("time to get result: ", e-d)
if score_type == "pearson":
score = pears_coef * -1
elif score_type == "spearman":
score = spear_coef * -1
elif score_type == "RMSF":
score = rmsf
elif score_type == "RMSE":
score = rmse
return score
input_folder, years)
haz_real.check()
if plot_img:
haz_real.plot_intensity(event=0)
haz_real.plot_fraction(event=0)
#%% Impact_function
# Set impact function (see tutorial climada_entity_ImpactFuncSet)
ifset_hail = ImpactFuncSet()
for imp_fun_dict in imp_fun_parameter:
imp_fun = fct.create_impact_func(haz_type, imp_fun_dict["imp_id"],
imp_fun_dict["L"], imp_fun_dict["x_0"],
imp_fun_dict["k"])
ifset_hail.append(imp_fun)
if plot_img:
ifset_hail.plot()
#%% Exposure
exp_infr = fct.load_exp_infr(force_new_hdf5_generation, name_hdf5_file,
input_folder, haz_real)
exp_meshs = fct.load_exp_agr(force_new_hdf5_generation, name_hdf5_file,
input_folder, haz_real)
exp_dur = exp_meshs.copy()
exp_dur["if_HL"] = exp_dur[
"if_HL"] + 3 #change if_HL to match the corresponding imp_id
if plot_img:
exp_infr.plot_basemap()
#This takes to long. Do over night!!!