def install_biolinux(target=None, flavor=None):
"""Main entry point for installing BioLinux on a remote server.
`flavor` allows customization of CloudBioLinux behavior. It can either
be a flavor name that maps to a corresponding directory in contrib/flavor
or the path to a custom directory. This can contain:
- alternative package lists (main.yaml, packages.yaml, custom.yaml)
- custom python code (nameflavor.py) that hooks into the build machinery
`target` allows running only particular parts of the build process. Valid choices are:
- packages Install distro packages
- custom Install custom packages
- chef_recipes Provision chef recipes
- libraries Install programming language libraries
- post_install Setup CloudMan, FreeNX and other system services
- cleanup Remove downloaded files and prepare images for AMI builds
"""
_setup_logging(env)
time_start = _print_time_stats("Config", "start")
_check_fabric_version()
if env.ssh_config_path and os.path.isfile(os.path.expanduser(env.ssh_config_path)):
env.use_ssh_config = True
_configure_fabric_environment(env, flavor,
ignore_distcheck=(target is not None
and target in ["libraries", "custom"]))
env.logger.debug("Target is '%s'" % target)
env.logger.debug("Flavor is '%s'" % flavor)
_perform_install(target, flavor)
_print_time_stats("Config", "end", time_start)
if hasattr(env, "keep_isolated") and env.keep_isolated:
_print_shell_exports(env)
def install_biolinux(target=None, flavor=None):
"""Main entry point for installing BioLinux on a remote server.
`flavor` allows customization of CloudBioLinux behavior. It can either
be a flavor name that maps to a corresponding directory in contrib/flavor
or the path to a custom directory. This can contain:
- alternative package lists (main.yaml, packages.yaml, custom.yaml)
- custom python code (nameflavor.py) that hooks into the build machinery
`target` allows running only particular parts of the build process. Valid choices are:
- packages Install distro packages
- custom Install custom packages
- chef_recipes Provision chef recipes
- libraries Install programming language libraries
- post_install Setup CloudMan, FreeNX and other system services
- cleanup Remove downloaded files and prepare images for AMI builds
"""
_setup_logging(env)
time_start = _print_time_stats("Config", "start")
_check_fabric_version()
if env.ssh_config_path and os.path.isfile(os.path.expanduser(env.ssh_config_path)):
env.use_ssh_config = True
_configure_fabric_environment(env, flavor,
ignore_distcheck=(target is not None
and target in ["libraries", "custom"]))
env.logger.debug("Target is '%s'" % target)
_perform_install(target, flavor)
_print_time_stats("Config", "end", time_start)
if hasattr(env, "keep_isolated") and env.keep_isolated:
_print_shell_exports(env)