Ejemplos de build_tree_from_distance_matrix en Python

Ejemplo n.º 1

Archivo: test_clearcut.py Proyecto: chungtseng/pycogent

 def test_build_tree_from_distance_matrix(self):
     """build_tree_from_distance_matrix builds a tree from a dict2d
     """
     data = [('sample1aaaaaaa', 'sample2', 1.438), ('sample2', 'sample1aaaaaaa', 1.438), ('sample1aaaaaaa', 'sample3', 2.45678), ('sample3', 'sample1aaaaaaa', 2.45678), ('sample2', 'sample3', 2.7), ('sample3', 'sample2', 2.7)]
     data_dict2d = Dict2D(data, Pad=True, Default=0.0)
     result = build_tree_from_distance_matrix(data_dict2d)
     self.assertEqual(str(result), '((sample1aaaaaaa:0.59739,sample2:0.84061),sample3:1.85939);')

Ejemplo n.º 2

Archivo: test_clearcut.py Proyecto: carze/clovr-base

 def test_build_tree_from_distance_matrix(self):
     """build_tree_from_distance_matrix builds a tree from a dict2d
     """
     data = [('sample1aaaaaaa', 'sample2', 1.438), ('sample2', 'sample1aaaaaaa', 1.438), ('sample1aaaaaaa', 'sample3', 2.45678), ('sample3', 'sample1aaaaaaa', 2.45678), ('sample2', 'sample3', 2.7), ('sample3', 'sample2', 2.7)]
     data_dict2d = Dict2D(data, Pad=True, Default=0.0)
     result = build_tree_from_distance_matrix(data_dict2d)
     self.assertEqual(str(result), '((sample1aaaaaaa:0.59739,sample2:0.84061),sample3:1.85939);')