def test_get_result_path(self):
"""Tests comrna result path"""
c = comRNA(InputHandler='_input_as_lines')
res = c(self.input)
self.assertEqualItems(res.keys(),['StdOut','StdErr','ExitStatus'])
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
def test_get_result_path(self):
"""Tests comrna result path"""
c = comRNA(InputHandler="_input_as_lines")
res = c(self.input)
self.assertEqualItems(res.keys(), ["StdOut", "StdErr", "ExitStatus"])
self.assertEqual(res["ExitStatus"], 0)
assert res["StdOut"] is not None
res.cleanUp()
def test_input_as_lines(self):
"""Test comrna input as lines"""
c = comRNA(InputHandler='_input_as_lines')
res = c(self.input)
#Can't compare stdout since comRNA app controller uses tmp filenames
#that are impossible to predict.
self.assertEqual(res['ExitStatus'], 0)
assert res['StdOut'] is not None
res.cleanUp()
def test_input_as_lines(self):
"""Test comrna input as lines"""
c = comRNA(InputHandler='_input_as_lines')
res = c(self.input)
#Can't compare stdout since comRNA app controller uses tmp filenames
#that are impossible to predict.
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
def test_input_as_string(self):
"""Test comrna input as string"""
c = comRNA()
f = open('/tmp/single.fasta', 'w')
txt = '\n'.join([str(i).strip('\n') for i in self.input])
f.write(txt)
f.close()
res = c('/tmp/single.fasta')
#Can't compare stdout since comRNA app controller uses tmp filenames
#that are impossible to predict.
self.assertEqual(res['ExitStatus'], 0)
assert res['StdOut'] is not None
res.cleanUp()
remove('/tmp/single.fasta')
def test_input_as_string(self):
"""Test comrna input as string"""
c = comRNA()
f = open('/tmp/single.fasta','w')
txt = '\n'.join([str(i).strip('\n') for i in self.input])
f.write(txt)
f.close()
res = c('/tmp/single.fasta')
#Can't compare stdout since comRNA app controller uses tmp filenames
#that are impossible to predict.
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
remove('/tmp/single.fasta')
def test_input_as_string(self):
"""Test comrna input as string"""
c = comRNA()
f = open("/tmp/single.fasta", "w")
txt = "\n".join([str(i).strip("\n") for i in self.input])
f.write(txt)
f.close()
res = c("/tmp/single.fasta")
# Can't compare stdout since comRNA app controller uses tmp filenames
# that are impossible to predict.
self.assertEqual(res["ExitStatus"], 0)
assert res["StdOut"] is not None
res.cleanUp()
remove("/tmp/single.fasta")
