def OnEdit(self, event):
# get 'sel' integer of listbox selection
sel = self.listbox.GetSelection()
if sel != -1:
# 'text' - name of pipeline config displayed in listbox
text = str(self.listbox.GetString(sel))
# 'path' - path of pipeline_config.yml
path = self.get_pipeline_path(text)
if os.path.exists(path):
import yaml
with open(path, 'r') as f:
config = yaml.load(f)
if 'pipelineName' in config.keys():
ind = True
elif 'pipeline_dir' in config.keys():
ind = False
else:
raise Exception('[!] This is not a C-PAC configuration '
'file.')
# open the pipeline_config editor window
MainFrame(self,
option="edit",
path=path,
pipeline_id=text,
ind=ind)
else:
print "Couldn't find the config file %s " % path
def OnLoad(self, event):
# Does this code do anything?? If you are looking for the code that
# gets called when you click Load, go to 'AddConfig'
dlg = wx.FileDialog(
self, message="Choose the config yaml file",
defaultDir=os.getcwd(),
defaultFile="",
wildcard= "YAML files(*.yaml, *.yml)|*.yaml;*.yml",
style=wx.OPEN | wx.CHANGE_DIR)
if dlg.ShowModal() == wx.ID_OK:
path = dlg.GetPath()
if len(path)>0 and os.path.exists(path):
MainFrame(self, option ="load", path=path)
else:
dlg = wx.MessageDialog(self, 'Invalid Path',
'Error!',
wx.OK | wx.ICON_ERROR)
dlg.Destroy()
dlg.Destroy()
def OnEdit(self, event):
sel = self.listbox.GetSelection()
if sel != -1:
text = self.listbox.GetString(sel)
path = self.get_pipeline_path(text)
if os.path.exists(path):
MainFrame(self, option ="edit", path=path, pipeline_id = text)
else:
print "Couldn't find the config file %s "%path
def OnEdit(self, event):
# get 'sel' integer of listbox selection
sel = self.listbox.GetSelection()
if sel != -1:
# 'text' - name of pipeline config displayed in listbox
text = str(self.listbox.GetString(sel))
# 'path' - path of pipeline_config.yml
path = self.get_pipeline_path(text)
if os.path.exists(path):
# open the pipeline_config editor window
MainFrame(self, option ="edit", path=path, pipeline_id = text)
else:
print "Couldn't find the config file %s "%path
def OnLoad(self, event):
dlg = wx.FileDialog(
self, message="Choose the config yaml file",
defaultDir=os.getcwd(),
defaultFile="",
wildcard= "YAML files(*.yaml, *.yml)|*.yaml;*.yml",
style=wx.OPEN | wx.CHANGE_DIR)
if dlg.ShowModal() == wx.ID_OK:
path = dlg.GetPath()
if len(path)>0 and os.path.exists(path):
MainFrame(self, option ="load", path=path)
else:
dlg = wx.MessageDialog(self, 'Invalid Path',
'Error!',
wx.OK | wx.ICON_ERROR)
dlg.Destroy()
dlg.Destroy()
def check_config(self, config):
ret_val = 1
def display(win, msg, changeBg=True):
wx.MessageBox(msg, "Error")
if changeBg:
win.SetBackgroundColour("pink")
win.SetFocus()
win.Refresh()
try:
c = yaml.load(open(config, 'r'))
except:
dlg = wx.MessageDialog(self, 'Error loading yaml file. Please check the file format',
'Error!', wx.OK | wx.ICON_ERROR)
ret_val = -1
dlg.ShowModal()
dlg.Destroy()
# the following code checks the loaded pipeline config file for missing parameters (ex. if an old config file is used and new parameters
# or features have been added) - if missing parameters are detected, it warns the user and informs them of the new defaults
missingParams = []
paramList = []
try:
params_file = open(p.resource_filename('CPAC', 'GUI/resources/config_parameters.txt'), "r")
except:
print "Error: Could not open configuration parameter file.", "\n"
raise Exception
paramInfo = params_file.read().split('\n')
for param in paramInfo:
if param != '':
paramList.append(param.split(','))
notify_centrality_misconfig = True
for param in paramList:
try:
if str(param[0]) not in c:
missingParams.append(param)
# Check centrality threshold options during initial load
if 'ThresholdOption' in str(param[0]):
config_val = c[str(param[0])]
if type(config_val) is list:
config_val = config_val[0]
if type(config_val) is int:
missingParams.append(param)
if notify_centrality_misconfig:
notify_centrality_misconfig = False
msg = 'At least one of your centrality treshold '\
'options is mis-formatted as an integer. '\
'Fix this in the pipeline config edit window'
dlg = wx.MessageDialog(self, msg, 'Error!', wx.OK | wx.ICON_ERROR)
ret_val = -1
dlg.ShowModal()
dlg.Destroy()
except:
errdlg = wx.MessageDialog(self, "Your pipeline " \
"configuration file could not be " \
"processed properly - please " \
"ensure it is formatted properly." \
"\n\nConfig file: %s" % config,
"Error!",
wx.OK | wx.ICON_ERROR)
errdlg.ShowModal()
errdlg.Destroy()
break
# If any missing parameters, notify user
if missingParams:
message = 'The following parameters are missing from your pipeline configuration file:\n\n'
for param in missingParams:
message = message + "\"" + str(param[1]) + "\"" + "\n" + "which can be found in tab:" + "\n" + "\"" + str(param[2]) + "\"\n\n"
message = message + "Click OK to review the defaults and accept or change the parameters."
dlg = wx.MessageDialog(self, message, 'Missing Parameters', wx.OK | wx.ICON_INFORMATION)
dlg.ShowModal()
dlg.Destroy()
if os.path.exists(config):
MainFrame(self, option ="load", path=config)
else:
print "Couldn't find the config file %s "%config
ret_val = -1
# Return if config was correct
return ret_val
def NewItem(self, event):
MainFrame(self, "save")
def check_config(self, config):
ret_val = 1
def display(win, msg, changeBg=True):
wx.MessageBox(msg, "Error")
if changeBg:
win.SetBackgroundColour("pink")
win.SetFocus()
win.Refresh()
try:
c = yaml.load(open(config, 'r'))
except:
dlg = wx.MessageDialog(
self, 'Error loading yaml file. Please check the file format',
'Error!', wx.OK | wx.ICON_ERROR)
ret_val = -1
dlg.ShowModal()
dlg.Destroy()
# the following code checks the loaded pipeline config file for missing parameters (ex. if an old config file is used and new parameters
# or features have been added) - if missing parameters are detected, it warns the user and informs them of the new defaults
missingParams = []
paramList = []
try:
params_file = open(
p.resource_filename('CPAC',
'GUI/resources/config_parameters.txt'),
"r")
except:
print "Error: Could not open configuration parameter file.", "\n"
raise Exception
paramInfo = params_file.read().split('\n')
for param in paramInfo:
if param != '':
paramList.append(param.split(','))
for param in paramList:
if str(param[0]) not in c:
missingParams.append(param)
if missingParams:
message = 'The following parameters are missing from your pipeline configuration file:\n\n'
for param in missingParams:
message = message + "\"" + str(
param[1]
) + "\"" + "\n" + "which can be found in tab:" + "\n" + "\"" + str(
param[2]) + "\"\n\n"
message = message + "Click OK to review the defaults and accept or change the parameters."
dlg = wx.MessageDialog(self, message, 'Missing Parameters',
wx.OK | wx.ICON_INFORMATION)
dlg.ShowModal()
dlg.Destroy()
if os.path.exists(config):
MainFrame(self, option="edit", path=config)
else:
print "Couldn't find the config file %s " % config
ret_val = -1
return ret_val
def NewGroup(self, event):
MainFrame(self,
"load",
path=p.resource_filename(
'CPAC', 'resources/configs/group_config_template.yml'),
ind=False)
def NewItem(self, event):
MainFrame(self,
"load",
path=p.resource_filename(
'CPAC',
'resources/configs/pipeline_config_template.yml'))
