def redo(self):
m = QApplication.instance().model
if self.rawData:
m.alignRawData(m)
else:
m.alignPeaksInRTDimension(m, self.polyDegree, self.errorRt)
for tree in (qApp.instance().view.treeView, qApp.instance().view.treeView_2, qApp.instance().view.treeView_3):
tree.removeAll()
for spl in qApp.instance().model:
MSDialogController.actualizeSpectraModel(spl)
if spl.rawPeaks:
MSDialogController.actualizePeakModel(spl)
if spl.mappedPeaks:
MSDialogController.actualizeClusterModel(spl)
qApp.instance().view.showInformationMessage('Alignment calculation done', "Alignment done")
def actualizeModels(self, idx):
"""
will update several models to fit with the selected
sample
"""
sample = self.model.sample(idx.data().toString(), fullNameEntry=False)
if sample is None:
return
self.qApp.view.sampleDockWidget.cursor().setShape(Qt.WaitCursor)
MSDialogController.actualizeSpectraModel(sample)
self.setCurrentSample(sample, 1)
if sample.rawPeaks:
MSDialogController.actualizePeakModel(sample)
self.setCurrentSample(sample, 2)
if sample.mappedPeaks:
MSDialogController.actualizeClusterModel(sample)
self.setCurrentSample(sample, 3)
self.qApp.view.sampleDockWidget.cursor().setShape(Qt.ArrowCursor)
def actualizeModels(self, idx):
"""
will update several models to fit with the selected
sample
"""
sample = self.model.sample(idx.data().toString(), fullNameEntry=False)
if sample is None:
return
self.qApp.view.sampleDockWidget.cursor().setShape(Qt.WaitCursor)
MSDialogController.actualizeSpectraModel(sample)
self.setCurrentSample(sample, 1)
if sample.rawPeaks:
MSDialogController.actualizePeakModel(sample)
self.setCurrentSample(sample, 2)
if sample.mappedPeaks:
MSDialogController.actualizeClusterModel(sample)
self.setCurrentSample(sample, 3)
self.qApp.view.sampleDockWidget.cursor().setShape(Qt.ArrowCursor)
def resize():
s = str(d.comboBox.currentText())
min_, max_ = map(float, str(d.lineEdit.text()).split('-'))
d.close()
if s == 'All':
if any([spl.rawPeaks for spl in self.model]):
self.view.showErrorMessage("Error",
"Can not resize sample when peak picking has already been done")
for sample in self.model:
print "Resize %s"%sample.shortName()
sample.resizeSpectraLength(min_, max_)
else:
sample = self.model.sample(s, fullNameEntry=False)
if sample.rawPeaks:
self.view.showErrorMessage("Error",
"Can not resize sample when peak picking has already been done")
sample.resizeSpectraLength(min_, max_)
for tree in (self.view.treeView, self.view.treeView_2, self.view.treeView_3):
tree.removeAll()
for spl in self.model:
MSDialogController.actualizeSpectraModel(spl)
self.view.showInformationMessage("Done", "Resizing has been done !")
