def test_post(self):
_ID = '1ad2cba40cb25cd70d00aa8fba9cfaf3'
VALID_V3_URL = \
'https://raw.githubusercontent.com/schurerlab/'\
'smartAPIs/master/LINCS_Data_Portal_smartAPIs.yml'
try:
smartapi = SmartAPI.get(_ID)
smartapi.delete()
refresh()
except NotFoundError:
pass
self.request("/api/metadata/",
method='POST',
data={'url': VALID_V3_URL},
expect=401)
self.request("/api/metadata/",
method='POST',
data={'url': MYGENE_URL},
headers=self.auth_user,
expect=409)
self.request("/api/metadata/",
method='POST',
headers=self.auth_user,
expect=400)
self.request("/api/metadata/",
method='POST',
data={'url': "http://invalidhost/file"},
headers=self.auth_user,
expect=400)
self.request("/api/metadata/",
method='POST',
data={
'url': VALID_V3_URL,
'dryrun': True
},
headers=self.auth_user)
refresh()
assert not SmartAPI.exists(_ID)
self.request("/api/metadata/",
method='POST',
data={'url': VALID_V3_URL},
headers=self.auth_user)
refresh()
assert SmartAPI.exists(_ID)
try:
smartapi = SmartAPI.get(_ID)
smartapi.delete()
except NotFoundError:
pass
def test_search():
"""
SmartAPI.exists(_id)
SmartAPI.find(slug)
SmartAPI.find(val, field)
"""
assert SmartAPI.exists(MYGENE_ID)
assert SmartAPI.exists(MYCHEM_ID)
assert SmartAPI.find('mygene') == MYGENE_ID
assert SmartAPI.find('mychem') == MYCHEM_ID
assert SmartAPI.find('tester', 'username')
assert SmartAPI.find('gene', 'tags.name') == MYGENE_ID
assert SmartAPI.find('drug', 'tags.name') == MYCHEM_ID
assert SmartAPI.find(MYGENE_URL, 'url') == MYGENE_ID
assert SmartAPI.find(MYCHEM_URL, 'url') == MYCHEM_ID
def test_delete(self):
# setup
assert SmartAPI.exists(MYGENE_ID)
self.request("/api/metadata/" + MYGENE_ID, method='DELETE', expect=401)
self.request("/api/metadata/" + MYGENE_ID,
method='DELETE',
headers=self.evil_user,
expect=403)
self.request("/api/metadata/" + MYGENE_ID,
method='DELETE',
headers=self.auth_user)
refresh()
assert not SmartAPI.exists(MYGENE_ID)
# teardown
refresh()
if not SmartAPI.exists(MYGENE_ID): # recover the deleted file
mygene = APIDoc(meta={'id': MYGENE_ID}, **MYGENE_ES)
mygene._raw = decoder.compress(MYGENE_RAW)
mygene.save()
refresh()
