def __init__(self, parent, plot_pp, plot_x, plot_y):
assert isinstance(plot_pp, Canvas)
assert isinstance(plot_x, Canvas)
assert isinstance(plot_y, Canvas)
# for deleting lineedits/etc. from parent class
self.parent = parent
self.plot_pp = plot_pp
self.plot_x = plot_x
self.plot_y = plot_y
# register_graph plot_pp
myEquilibria.register_graph(self.plot_pp)
myNullclines.register_graph(self.plot_pp)
myTrajectories.register_graph(self, self.plot_pp, self.plot_x,
self.plot_y)
myStreamlines.register_graph(self, self.plot_pp)
myVectorfield.register_graph(self, self.plot_pp)
# read initial values: vector field, streamlines, nullclines
self.vf_toggle = myConfig.get_boolean("Vectorfield", "vf_onByDefault")
self.nc_toggle = myConfig.get_boolean("Nullclines", "nc_onByDefault")
self.sl_toggle = myConfig.get_boolean("Streamlines",
"stream_onByDefault")
myLogger.debug_message("Graph class initialized")
def __init__(self, parent, canvas):
self.myWidget = parent
Plot.__init__(self, self.myWidget, canvas)
# read initial values: vector field, streamlines, nullclines
self.vf_toggle = myConfig.get_boolean("Vectorfield", "vf_onByDefault")
self.nc_toggle = myConfig.get_boolean("Nullclines", "nc_onByDefault")
self.sl_toggle = myConfig.get_boolean("Streamlines", "stream_onByDefault")
def __init__(self, parent, canvas):
self.myWidget = parent
Plot.__init__(self, self.myWidget, canvas)
# read initial values: vector field, streamlines, nullclines
self.vf_toggle = myConfig.get_boolean("Vectorfield", "vf_onByDefault")
self.nc_toggle = myConfig.get_boolean("Nullclines", "nc_onByDefault")
self.sl_toggle = myConfig.get_boolean("Streamlines", "stream_onByDefault")
def initialize_ui(self):
# gets called after submitting a system (updae_ui() cannot be
# used since the new system tab is not visible yet
# values are taken from config file
self.toggle_vectorfield_action.setChecked(myConfig.get_boolean("Vectorfield", "vf_onByDefault"))
self.toggle_streamlines_action.setChecked(myConfig.get_boolean("Streamlines", "stream_onByDefault"))
self.toggle_equilibrium_action.setChecked(False)
self.toggle_nullclines_action.setChecked(myConfig.get_boolean("Nullclines", "nc_onByDefault"))
def clear(self):
self.canvas.axes.clear()
if myConfig.get_boolean(self._section, self._token + "showGrid"):
self.canvas.axes.grid()
if myConfig.get_boolean(self._section, self._token + "showMinorTicks"):
self.canvas.axes.minorticks_on()
else:
self.canvas.axes.minorticks_off()
if not myConfig.get_boolean(self._section, self._token + "showTTicks"):
self.canvas.axes.zaxis.set_ticks([])
if not myConfig.get_boolean(self._section, self._token + "showXTicks"):
self.canvas.axes.xaxis.set_ticks([])
if not myConfig.get_boolean(self._section, self._token + "showYTicks"):
self.canvas.axes.yaxis.set_ticks([])
if myConfig.get_boolean(self._section, self._token + "showTitle"):
title_x_dot = sp.latex(
self.myWidget.mySystem.equation.what_is_my_system()[0])
title_y_dot = sp.latex(
self.myWidget.mySystem.equation.what_is_my_system()[1])
self.canvas.axes.set_title("$\\dot{x} = " + title_x_dot +
"$\n$\\dot{y} = " + title_y_dot + "$")
else:
self.canvas.fig.subplots_adjust(top=0.99)
if myConfig.get_boolean(self._section, self._token + "showXLabel"):
xlabel = "$x$"
label_fontsize = myConfig.read(self._section,
self._token + "labelFontSize")
self.canvas.axes.set_xlabel(xlabel, fontsize=label_fontsize)
if myConfig.get_boolean(self._section, self._token + "showYLabel"):
label_fontsize = myConfig.read(self._section,
self._token + "labelFontSize")
ylabel = "$y$"
self.canvas.axes.set_ylabel(ylabel, fontsize=label_fontsize)
if myConfig.get_boolean(self._section, self._token + "showTLabel"):
label_fontsize = myConfig.read(self._section,
self._token + "labelFontSize")
tlabel = "$t$"
self.canvas.axes.set_zlabel(tlabel, fontsize=label_fontsize)
if not myConfig.get_boolean(self._section, self._token + "showSpines"):
for spine in self.canvas.axes.spines.itervalues():
spine.set_visible(False)
self.update()
myLogger.debug_message("3d graph cleared")
def plot_eigenvectors(self, equilibrium):
if self.linear:
# system is linear -> calculate jacobian
x, y = sp.symbols("x, y")
xdot = self.equation.x_dot_expr
ydot = self.equation.y_dot_expr
A11 = xdot.diff(x)
A12 = xdot.diff(y)
A21 = ydot.diff(x)
A22 = ydot.diff(y)
jac = np.array([[A11,A12],[A21,A22]], dtype=float)
eigenvalues, eigenvectors = np.linalg.eig(jac)
eigvec0 = eigenvectors[:,0]
eigvec1 = eigenvectors[:,1]
# calculating eigenvalues and eigenvectors:
#~ eigenvalues, eigenvectors = self.Phaseplane.Equilibria.get_eigenval_eigenvec(equilibrium)
myLogger.message("Eigenvectors: (" + str(eigvec0[0]) + ", " + str(eigvec0[1]) + ") and (" + str(eigvec1[0]) + ", " + str(eigvec1[1]) + ")")
# scaling
xmin, xmax, ymin, ymax = self.Phaseplane.Plot.get_limits()
d1 = (xmax-xmin)/10
d2 = (ymax-ymin)/10
d_large = (xmax-xmin)*(ymax-ymin)
EV0 = np.array([np.real(eigvec0[0]),np.real(eigvec0[1])])
EV0_norm = np.sqrt(EV0[0]**2+EV0[1]**2)
EV0_scaled = np.array([d1*(1/EV0_norm)*EV0[0],d1*(1/EV0_norm)*EV0[1]])
EV1 = np.array([np.real(eigvec1[0]),np.real(eigvec1[1])])
EV1_norm = np.sqrt(EV1[0]**2+EV1[1]**2)
EV1_scaled = np.array([d1*(1/EV1_norm)*EV1[0],d1*(1/EV1_norm)*EV1[1]])
# plot equilibrium:
self.Phaseplane.Plot.canvas.axes.plot(equilibrium[0], equilibrium[1], 'ro', picker=2)
# plot eigenvectors:
color_eigenvec = myConfig.read("Linearization", "lin_eigenvector_color")
color_eigenline = myConfig.read("Linearization", "lin_eigenvector_linecolor")
if myConfig.get_boolean("Linearization","lin_show_eigenline"):
self.Phaseplane.Plot.canvas.axes.arrow(equilibrium[0], equilibrium[1], d_large*EV0_scaled[0], d_large*EV0_scaled[1], head_width=0, head_length=0, color=color_eigenline)
self.Phaseplane.Plot.canvas.axes.arrow(equilibrium[0], equilibrium[1], -d_large*EV0_scaled[0], -d_large*EV0_scaled[1], head_width=0, head_length=0, color=color_eigenline)
if myConfig.get_boolean("Linearization","lin_show_eigenvector"):
self.Phaseplane.Plot.canvas.axes.arrow(equilibrium[0], equilibrium[1], EV0_scaled[0], EV0_scaled[1], head_width=0, head_length=0, color=color_eigenvec)
if myConfig.get_boolean("Linearization","lin_show_eigenline"):
self.Phaseplane.Plot.canvas.axes.arrow(equilibrium[0], equilibrium[1], d_large*EV1_scaled[0], d_large*EV1_scaled[1], head_width=0, head_length=0, color=color_eigenline)
self.Phaseplane.Plot.canvas.axes.arrow(equilibrium[0], equilibrium[1], -d_large*EV1_scaled[0], -d_large*EV1_scaled[1], head_width=0, head_length=0, color=color_eigenline)
if myConfig.get_boolean("Linearization","lin_show_eigenvector"):
self.Phaseplane.Plot.canvas.axes.arrow(equilibrium[0], equilibrium[1], EV1_scaled[0], EV1_scaled[1], head_width=0, head_length=0, color=color_eigenvec)
self.Phaseplane.Plot.add_eigenvectors_to_title(eigvec0, eigvec1)
def initialize(self):
"""
this function gets called after myConfig instance has been created.
logging before that is possible with hardcoded values.
"""
from core.ConfigHandler import myConfig
self.show_error = myConfig.get_boolean("Logging", "log_showError")
self.show_warning = myConfig.get_boolean("Logging", "log_showWarning")
self.show_debug = myConfig.get_boolean("Logging", "log_showDbg")
myLogger.debug_message("Logging class initialized.")
def initialize_ui(self):
# gets called after submitting a system (updae_ui() cannot be
# used since the new system tab is not visible yet
# values are taken from config file
self.toggle_vectorfield_action.setChecked(
myConfig.get_boolean("Vectorfield", "vf_onByDefault"))
self.toggle_streamlines_action.setChecked(
myConfig.get_boolean("Streamlines", "stream_onByDefault"))
self.toggle_equilibrium_action.setChecked(False)
self.toggle_nullclines_action.setChecked(
myConfig.get_boolean("Nullclines", "nc_onByDefault"))
def initialize(self):
"""
this function gets called after myConfig instance has been created.
logging before that is possible with hardcoded values.
"""
from core.ConfigHandler import myConfig
self.show_error = myConfig.get_boolean("Logging", "log_showError")
self.show_warning = myConfig.get_boolean("Logging", "log_showWarning")
self.show_debug = myConfig.get_boolean("Logging", "log_showDbg")
myLogger.debug_message("Logging class initialized.")
def __init__(self, parent):
self.mySystem = parent
QtWidgets.QWidget.__init__(self)
self.setupUi(self)
self.latex_installed = self.mySystem.myPyplane.latex_installed
self.Layout = QtWidgets.QVBoxLayout(self.frame)
self.Canvas = Canvas(self, self.latex_installed)
self.Layout.addWidget(self.Canvas)
# Axis labels
self.xlabel_str = "x"
self.ylabel_str = "y"
# set forward and backward integration true
if myConfig.get_boolean("Trajectories", "traj_checkForwardByDefault"):
self.forwardCheckbox.setChecked(True)
if myConfig.get_boolean("Trajectories", "traj_checkBackwardByDefault"):
self.backwardCheckbox.setChecked(True)
self.xminLineEdit.setText(str(myConfig.read("Phaseplane", "pp_xmin")))
self.xmaxLineEdit.setText(str(myConfig.read("Phaseplane", "pp_xmax")))
self.yminLineEdit.setText(str(myConfig.read("Phaseplane", "pp_ymin")))
self.ymaxLineEdit.setText(str(myConfig.read("Phaseplane", "pp_ymax")))
self.Plot = PhasePlot(self, self.Canvas)
self.Plot.set_window_range()
self.VF = Vectorfield(self)
self.SL = StreamlineHandler(self)
self.Nullclines = NullclineHandler(self)
self.Equilibria = EquilibriumHandler(self)
# menu checkers
self.mySystem.myPyplane.toggle_vectorfield_action.setChecked(
self.VF.tgl)
# connect buttons
self.SetButton.clicked.connect(self.Plot.set_window_range)
self.ZoomButton.clicked.connect(self.Canvas.toggle_zoom_mode)
self.ZoomButton.setCheckable(True)
self.RefreshButton.clicked.connect(self.Plot.refresh)
self.CreateTrajectoryButton.clicked.connect(
self.mySystem.Trajectories.create_trajectory)
# linearize button and combo box
# TODO: Fix next line!
# self.connect(self.linBox, QtCore.SIGNAL('activated(QString)'), self.eq_chosen)
self.linButton.clicked.connect(self.linearize_system)
self.hide_linearization_objects()
def init(self):
""" This function gets called only after program start.
"""
# load tmp file
self.load_tmp_system()
# set forward and backward integration true
if myConfig.get_boolean("Trajectories", "traj_checkForwardByDefault"):
self.forwardCheckbox.setChecked(True)
if myConfig.get_boolean("Trajectories", "traj_checkBackwardByDefault"):
self.backwardCheckbox.setChecked(True)
self.initializing()
def __init__(self, parent):
self.mySystem = parent
QtWidgets.QWidget.__init__(self)
self.setupUi(self)
self.latex_installed = self.mySystem.myPyplane.latex_installed
self.Layout = QtWidgets.QVBoxLayout(self.frame)
self.Canvas = Canvas(self, self.latex_installed)
self.Layout.addWidget(self.Canvas)
# Axis labels
self.xlabel_str = "x"
self.ylabel_str = "y"
# set forward and backward integration true
if myConfig.get_boolean("Trajectories", "traj_checkForwardByDefault"):
self.forwardCheckbox.setChecked(True)
if myConfig.get_boolean("Trajectories", "traj_checkBackwardByDefault"):
self.backwardCheckbox.setChecked(True)
self.xminLineEdit.setText(str(myConfig.read("Phaseplane", "pp_xmin")))
self.xmaxLineEdit.setText(str(myConfig.read("Phaseplane", "pp_xmax")))
self.yminLineEdit.setText(str(myConfig.read("Phaseplane", "pp_ymin")))
self.ymaxLineEdit.setText(str(myConfig.read("Phaseplane", "pp_ymax")))
self.Plot = PhasePlot(self, self.Canvas)
self.Plot.set_window_range()
self.VF = Vectorfield(self)
self.SL = StreamlineHandler(self)
self.Nullclines = NullclineHandler(self)
self.Equilibria = EquilibriumHandler(self)
# menu checkers
self.mySystem.myPyplane.toggle_vectorfield_action.setChecked(self.VF.tgl)
# connect buttons
self.SetButton.clicked.connect(self.Plot.set_window_range)
self.ZoomButton.clicked.connect(self.Canvas.toggle_zoom_mode)
self.ZoomButton.setCheckable(True)
self.RefreshButton.clicked.connect(self.Plot.refresh)
self.CreateTrajectoryButton.clicked.connect(self.mySystem.Trajectories.create_trajectory)
# linearize button and combo box
# TODO: Fix next line!
# self.connect(self.linBox, QtCore.SIGNAL('activated(QString)'), self.eq_chosen)
self.linButton.clicked.connect(self.linearize_system)
self.hide_linearization_objects()
def clear(self):
self.canvas.axes.clear()
if myConfig.get_boolean(self._section, self._token + "showGrid"):
self.canvas.axes.grid()
if myConfig.get_boolean(self._section, self._token + "showMinorTicks"):
self.canvas.axes.minorticks_on()
else:
self.canvas.axes.minorticks_off()
if not myConfig.get_boolean(self._section, self._token + "showTTicks"):
self.canvas.axes.zaxis.set_ticks([])
if not myConfig.get_boolean(self._section, self._token + "showXTicks"):
self.canvas.axes.xaxis.set_ticks([])
if not myConfig.get_boolean(self._section, self._token + "showYTicks"):
self.canvas.axes.yaxis.set_ticks([])
if myConfig.get_boolean(self._section, self._token + "showTitle"):
title_x_dot = sp.latex(self.myWidget.mySystem.equation.what_is_my_system()[0])
title_y_dot = sp.latex(self.myWidget.mySystem.equation.what_is_my_system()[1])
self.canvas.axes.set_title("$\\dot{x} = " + title_x_dot + "$\n$\\dot{y} = " + title_y_dot + "$")
else:
self.canvas.fig.subplots_adjust(top=0.99)
if myConfig.get_boolean(self._section, self._token + "showXLabel"):
xlabel = "$x$"
label_fontsize = myConfig.read(self._section, self._token + "labelFontSize")
self.canvas.axes.set_xlabel(xlabel, fontsize=label_fontsize)
if myConfig.get_boolean(self._section, self._token + "showYLabel"):
label_fontsize = myConfig.read(self._section, self._token + "labelFontSize")
ylabel = "$y$"
self.canvas.axes.set_ylabel(ylabel, fontsize=label_fontsize)
if myConfig.get_boolean(self._section, self._token + "showTLabel"):
label_fontsize = myConfig.read(self._section, self._token + "labelFontSize")
tlabel = "$t$"
self.canvas.axes.set_zlabel(tlabel, fontsize=label_fontsize)
if not myConfig.get_boolean(self._section, self._token + "showSpines"):
for spine in self.canvas.axes.spines.itervalues():
spine.set_visible(False)
self.update()
myLogger.debug_message("3d graph cleared")
def __init__(self, parent, latex_installed):
self.myWidget = parent
plot_background = myConfig.read("Plotting", "plot_background")
plot_CanvasBackground = str(myConfig.read("Plotting", "plot_CanvasBackground"))
plot_fontSize = int(myConfig.read("Plotting", "plot_fontSize"))
plot_topOfPlot = float(myConfig.read("Plotting", "plot_topOfPlot"))
plot_leftOfPlot = 0.12#float(myConfig.read("Plotting", "plot_leftOfPlot"))
plot_rightOfPlot = float(myConfig.read("Plotting", "plot_rightOfPlot"))
plot_bottomOfPlot = 0.1#float(myConfig.read("Plotting", "plot_bottomOfPlot"))
self.fig = pl.Figure(facecolor=plot_background)
pl.matplotlib.rc('font', size=plot_fontSize)
# Check if LaTeX and dvipng are installed on this system since this
# is required by matplotlib for fine rendering. If it is not installed
# only basic rendering will be done in the following
rc('text', usetex=latex_installed)
# ALIASING
# TODO: read aliasing variables:
# pl.matplotlib.rc('lines', antialiased=False)
# pl.matplotlib.rc('text', antialiased=False)
# pl.matplotlib.rc('patch', antialiased=False)
self.axes = self.fig.add_subplot(111)
# Matplotlib 2.0 vs. 1.5 behavior...
try:
self.axes.set_facecolor(plot_CanvasBackground) # Matplotlib >= 2
except AttributeError:
self.axes.set_axis_bgcolor(plot_CanvasBackground) # Matplotlib < 2
# matplotlib background transparent (issues on old versions?)
if myConfig.get_boolean("Plotting", "plot_backgroundTransparent"):
self.fig.frameon = False
self.adjust = self.fig.subplots_adjust(top=plot_topOfPlot,
left=plot_leftOfPlot,
right=plot_rightOfPlot,
bottom=plot_bottomOfPlot)
FigureCanvas.__init__(self, self.fig)
self.setParent(parent)
self.navigationToolbar = Toolbar(self)
# TODO: rather as a real toolbar:
# self.toolbar = NavigationToolbar(self, self.myWidget.mpl_layout, coordinates=True)
# self.myWidget.mplvl.addWidget(self.toolbar)
FigureCanvas.setSizePolicy(self, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
FigureCanvas.updateGeometry(self)
# zoom mode on/off
self.zoomMode = False
myLogger.debug_message(str(self) + ": initialized")
def add_eigenvectors_to_title(self, vec0, vec1):
if myConfig.get_boolean(self._section, self._token + "showTitle"):
title_x_dot = sp.latex(self.myWidget.mySystem.equation.what_is_my_system()[0])
title_y_dot = sp.latex(self.myWidget.mySystem.equation.what_is_my_system()[1])
dec_place = 2 # TODO: read from config
self.canvas.axes.set_title("$\\dot{x} = " + title_x_dot + "$\n$\\dot{y} = " + title_y_dot +
"$\n$\mathbf{v}_1=("+str(round(vec0[0],dec_place)) + "," +
str(round(vec0[1],dec_place)) + ")^T\qquad\mathbf{v}_2=(" +
str(round(vec1[0],dec_place)) + "," + str(round(vec1[1],dec_place)) + ")^T$")
def __init__(self, parent, latex_installed):
self.myWidget = parent
plot_background = myConfig.read("Plotting", "plot_background")
plot_CanvasBackground = str(myConfig.read("Plotting", "plot_CanvasBackground"))
plot_fontSize = int(myConfig.read("Plotting", "plot_fontSize"))
plot_topOfPlot = float(myConfig.read("Plotting", "plot_topOfPlot"))
plot_leftOfPlot = float(myConfig.read("Plotting", "plot_leftOfPlot"))
plot_rightOfPlot = float(myConfig.read("Plotting", "plot_rightOfPlot"))
plot_bottomOfPlot = float(myConfig.read("Plotting", "plot_bottomOfPlot"))
self.fig = pl.Figure(facecolor=plot_background)
pl.matplotlib.rc('font', size=plot_fontSize)
# Check if LaTeX and dvipng are installed on this system since this
# is required by matplotlib for fine rendering. If it is not installed
# only basic rendering will be done in the following
rc('text', usetex=latex_installed)
# ALIASING
# TODO: read aliasing variables:
# pl.matplotlib.rc('lines', antialiased=False)
# pl.matplotlib.rc('text', antialiased=False)
# pl.matplotlib.rc('patch', antialiased=False)
self.axes = self.fig.add_subplot(111)
self.axes.set_axis_bgcolor(plot_CanvasBackground)
# matplotlib background transparent (issues on old versions?)
if myConfig.get_boolean("Plotting", "plot_backgroundTransparent"):
self.fig.frameon = False
self.adjust = self.fig.subplots_adjust(top=plot_topOfPlot,
left=plot_leftOfPlot,
right=plot_rightOfPlot,
bottom=plot_bottomOfPlot)
FigureCanvas.__init__(self, self.fig)
self.setParent(parent)
self.navigationToolbar = Toolbar(self)
# TODO: rather as a real toolbar:
#~ self.toolbar = NavigationToolbar(self, self.myWidget.mpl_layout, coordinates=True)
#~ self.myWidget.mplvl.addWidget(self.toolbar)
FigureCanvas.setSizePolicy(self, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
FigureCanvas.updateGeometry(self)
# zoom mode on/off
self.zoomMode = False
myLogger.debug_message(str(self) + ": initialized")
def __init__(self, parent, plot_pp, plot_x, plot_y):
assert isinstance(plot_pp, Canvas)
assert isinstance(plot_x, Canvas)
assert isinstance(plot_y, Canvas)
# for deleting lineedits/etc. from parent class
self.parent = parent
self.plot_pp = plot_pp
self.plot_x = plot_x
self.plot_y = plot_y
# register_graph plot_pp
myEquilibria.register_graph(self.plot_pp)
myNullclines.register_graph(self.plot_pp)
myTrajectories.register_graph(self, self.plot_pp, self.plot_x, self.plot_y)
myStreamlines.register_graph(self, self.plot_pp)
myVectorfield.register_graph(self, self.plot_pp)
# read initial values: vector field, streamlines, nullclines
self.vf_toggle = myConfig.get_boolean("Vectorfield", "vf_onByDefault")
self.nc_toggle = myConfig.get_boolean("Nullclines", "nc_onByDefault")
self.sl_toggle = myConfig.get_boolean("Streamlines", "stream_onByDefault")
myLogger.debug_message("Graph class initialized")
def __init__(self, parent=None):
plot_background = myConfig.read("Plotting", "plot_background")
plot_CanvasBackground = str(myConfig.read("Plotting", "plot_CanvasBackground"))
plot_fontSize = int(myConfig.read("Plotting", "plot_fontSize"))
plot_topOfPlot = float(myConfig.read("Plotting", "plot_topOfPlot"))
plot_leftOfPlot = float(myConfig.read("Plotting", "plot_leftOfPlot"))
plot_rightOfPlot = float(myConfig.read("Plotting", "plot_rightOfPlot"))
plot_bottomOfPlot = float(myConfig.read("Plotting", "plot_bottomOfPlot"))
self.fig = pl.Figure(facecolor=plot_background)
pl.matplotlib.rc('font', size=plot_fontSize)
# use latex
rc('text', usetex=True)
# ALIASING
# TODO: read aliasing variables:
# pl.matplotlib.rc('lines', antialiased=False)
# pl.matplotlib.rc('text', antialiased=False)
# pl.matplotlib.rc('patch', antialiased=False)
self.axes = self.fig.add_subplot(111)
self.axes.set_axis_bgcolor(plot_CanvasBackground)
# matplotlib background transparent (issues on old versions?)
if myConfig.get_boolean("Plotting", "plot_backgroundTransparent"):
self.fig.frameon = False
self.adjust = self.fig.subplots_adjust(top=plot_topOfPlot,
left=plot_leftOfPlot,
right=plot_rightOfPlot,
bottom=plot_bottomOfPlot)
FigureCanvas.__init__(self, self.fig)
self.setParent(parent)
self.navigationToolbar = Toolbar(self)
FigureCanvas.setSizePolicy(self, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
FigureCanvas.updateGeometry(self)
# zoom mode on/off
self.zoomMode = False
myLogger.debug_message(str(self) + ": initialized")
def clear(self):
self.canvas.axes.clear()
if myConfig.get_boolean(self._section, self._token + "showGrid"):
self.canvas.axes.grid()
if myConfig.get_boolean(self._section, self._token + "showMinorTicks"):
self.canvas.axes.minorticks_on()
else:
self.canvas.axes.minorticks_off()
if not myConfig.get_boolean(self._section, self._token + "showXTicks"):
self.canvas.axes.xaxis.set_ticks([])
if not myConfig.get_boolean(self._section, self._token + "showYTicks"):
self.canvas.axes.yaxis.set_ticks([])
if myConfig.get_boolean(self._section, self._token + "showXLabel"):
pp_label_fontsize = myConfig.read(self._section, self._token + "labelFontSize")
xlabel = "$%s$" % self.myWidget.xlabel_str
self.canvas.axes.set_xlabel(xlabel, fontsize=pp_label_fontsize)
if myConfig.get_boolean(self._section, self._token + "showTitle"):
title_x_dot = sp.latex(self.myWidget.mySystem.equation.what_is_my_system()[0])
title_y_dot = sp.latex(self.myWidget.mySystem.equation.what_is_my_system()[1])
self.canvas.axes.set_title("$\\dot{x} = " + title_x_dot + "$\n$\\dot{y} = " + title_y_dot + "$")
else:
self.canvas.fig.subplots_adjust(top=0.99)
if myConfig.get_boolean(self._section, self._token + "showYLabel"):
pp_label_fontsize = myConfig.read(self._section, self._token + "labelFontSize")
ylabel = "$%s$" % self.myWidget.ylabel_str
self.canvas.axes.set_ylabel(ylabel, fontsize=pp_label_fontsize)
# TODO (jcw): Check if this can be removed (together with Graph class)
# if not myConfig.get_boolean(self._section, self._token + "showSpines"):
# for spine in Graph.axes.spines.values():
# spine.set_visible(False)
self.update()
myLogger.debug_message("Graph cleared")
def __init__(self, parent):
self.myWidget = parent
self.stack = []
self.tgl = myConfig.get_boolean("Vectorfield", "vf_onByDefault")
self.update()
def __init__(self, parent):
self.myWidget = parent
self.stack = []
self.tgl = myConfig.get_boolean("Vectorfield", "vf_onByDefault")
self.update()
def plot_trajectory(self, initial_condition, forward=None, backward=None):
"""
This function plots the solution of the differential equation
depending on the initial condition.
In general, the trajectory consists of three elements:
the forward trajectory, the backward trajectory and the marker for
the initial condition, while each element can be turned off in the
config file / settings tab.
The elements are stored in a list. A dictionary stores this data
with the initalCondition as its key, and the list as the value.
Input variables: - initialCondition (list with x and y
coordinate)
Return variables: - none
"""
if not forward and not backward:
myLogger.warn_message("Please select forward and/or backward integration!")
return False
else:
traj_stack = []
traj_integrationtime = float(myConfig.read("Trajectories", "traj_integrationtime"))
traj_integrationstep = float(myConfig.read("Trajectories", "traj_integrationstep"))
time = pl.arange(0, traj_integrationtime, traj_integrationstep)
if forward:
# while integrate.ode.successful():
# self.mySystem.jacobian(initialCondition)
assert isinstance(initial_condition, list)
self.x = integrate.odeint(self.mySystem.equation.rhs, initial_condition, time)
#, full_output=1, printmessg=1, mxstep=20000)
xvalue = self.x[:, 0] # extract the x vector
yvalue = self.x[:, 1] # extract the dx/dt vector
# masking xvalue (deleting invalid entries)
# xvalue = np.ma.masked_outside(xvalue,-1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# myMask = xvalue.mask
# new_time = np.ma.array(self.t, mask=myMask).compressed()
# yvalue = np.ma.array(yvalue, mask=myMask).compressed()
# xvalue = xvalue.compressed()
# QtCore.pyqtRemoveInputHook()
# embed()
# masking yvalue
# yvalue = np.ma.masked_outside(yvalue,-1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# myMask = yvalue.mask
# new_time = np.ma.array(self.t, mask=myMask).compressed()
# xvalue = np.ma.array(xvalue, mask=myMask)
# yvalue = yvalue.compressed()
# QtCore.pyqtRemoveInputHook()
# embed()
# plot solution in phase plane:
traj_ppForwardColor = myConfig.read("Trajectories", "traj_ppForwardColor")
plot1 = self.mySystem.Phaseplane.Plot.canvas.axes.plot(xvalue, yvalue, traj_ppForwardColor)
plot3d_forward = self.mySystem.Txy.Plot.canvas.axes.plot(xvalue, yvalue, time, traj_ppForwardColor)
zero_arrayx = np.array([10]*len(time))
zero_arrayy = np.array([-10]*len(time))
if myConfig.get_boolean("3d-plot", "3d_showXProjection"):
plot3d_forward_projx = self.mySystem.Txy.Plot.canvas.axes.plot(xvalue, zero_arrayx, time, "0.75")
traj_stack.append(plot3d_forward_projx)
if myConfig.get_boolean("3d-plot", "3d_showYProjection"):
plot3d_forward_projy = self.mySystem.Txy.Plot.canvas.axes.plot(zero_arrayy, yvalue, time, "0.75")
traj_stack.append(plot3d_forward_projy)
if myConfig.get_boolean("3d-plot", "3d_showYXProjection"):
plot3d_forward_projxy = self.mySystem.Txy.Plot.canvas.axes.plot(xvalue, yvalue, 0, "0.75")
traj_stack.append(plot3d_forward_projxy)
# numpy array with both x and y values in pairs
# TODO: might be faster if xvalues or yvalues greater than self.mySystem.max_norm
# are masked before calculating the norm
xvalue, yvalue = self.filter_values(xvalue, yvalue)
# THIS HAS BEEN COMMENTED
# z = np.column_stack((xvalue,yvalue))
#
# # put norm of each pair in numpy array
# normed_z = np.array([np.linalg.norm(v) for v in z])
#
# # masking
# max_norm = self.mySystem.max_norm
# masked_normed_z = np.ma.masked_greater(normed_z, max_norm)
# myMask = masked_normed_z.mask
#
# # new xvalue and yvalue
# xvalue = np.ma.array(xvalue, mask=myMask)
# yvalue = np.ma.array(yvalue, mask=myMask)
# UNTIL HERE!
# plot solution in x(t):
traj_x_tColor = myConfig.read("Trajectories", "traj_x_tColor")
plot2 = self.mySystem.Xt.Plot.canvas.axes.plot(time, xvalue, color=traj_x_tColor)
# plot solution in y(t):
traj_y_tColor = myConfig.read("Trajectories", "traj_y_tColor")
plot3 = self.mySystem.Yt.Plot.canvas.axes.plot(time, yvalue, color=traj_y_tColor)
# self.myLogger.message("forward trajectory done for initial condition "+str(initialCondition))
traj_stack.append(plot1)
traj_stack.append(plot2)
traj_stack.append(plot3)
traj_stack.append(plot3d_forward)
# backward in time --------------------------------------------
if backward:
self.x_bw = integrate.odeint(self.mySystem.equation.n_rhs, initial_condition, time)
#, full_output=1, printmessg=1)#, mxstep=5000)
# self.x_bw, infodict2 = integrate.odeint(self.mySystem.n_rhs,
# initialCondition, self.t)#, full_output=1, printmessg=1)#, mxstep=5000)
xvalue_bw = self.x_bw[:, 0]
yvalue_bw = self.x_bw[:, 1]
# # masking xvalue_bw (deleting invalid entries)
# xvalue_bw = np.ma.masked_outside(xvalue_bw,1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# yvalue_bw = np.ma.array(yvalue_bw, mask=xvalue_bw.mask)
# xvalue_bw = xvalue_bw.compressed()
#
# # masking yvalue_bw
# yvalue_bw = np.ma.masked_outside(yvalue_bw,1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# xvalue = np.ma.array(xvalue, mask=yvalue.mask)
# yvalue_bw = yvalue_bw.compressed()
# xvalue, yvalue = self.filter_values(xvalue,yvalue)
# plot in phase plane:
traj_ppBackwardColor = myConfig.read("Trajectories", "traj_ppBackwardColor")
plot4 = self.mySystem.Phaseplane.Plot.canvas.axes.plot(xvalue_bw, yvalue_bw, color=traj_ppBackwardColor)
plot3d_backward = self.mySystem.Txy.Plot.canvas.axes.plot(xvalue_bw, yvalue_bw, -time, traj_ppForwardColor)
zero_arrayx = np.array([10]*len(time))
zero_arrayy = np.array([-10]*len(time))
if myConfig.get_boolean("3d-plot", "3d_showXProjection"):
plot3d_backward_projx = self.mySystem.Txy.Plot.canvas.axes.plot(xvalue_bw, zero_arrayx, -time, "0.75")
traj_stack.append(plot3d_backward_projx)
if myConfig.get_boolean("3d-plot", "3d_showYProjection"):
plot3d_backwardprojy = self.mySystem.Txy.Plot.canvas.axes.plot(zero_arrayy, yvalue_bw, -time, "0.75")
traj_stack.append(plot3d_backwardprojy)
if myConfig.get_boolean("3d-plot", "3d_showYXProjection"):
plot3d_backward_projxy = self.mySystem.Txy.Plot.canvas.axes.plot(xvalue_bw, yvalue_bw, 0, "0.75")
traj_stack.append(plot3d_backward_projxy)
traj_stack.append(plot4)
traj_stack.append(plot3d_backward)
# self.myLogger.message("backward trajectory
# done for initial condition "+str(initialCondition))
# mark init:
if myConfig.get_boolean("Trajectories", "traj_plotInitPoint"):
traj_initPointColor = myConfig.read("Trajectories", "traj_initPointColor")
plot5 = self.mySystem.Phaseplane.Plot.canvas.axes.plot(initial_condition[0],
initial_condition[1],
'.',
color=traj_initPointColor)
plot3d_initpoint = self.mySystem.Txy.Plot.canvas.axes.plot([initial_condition[0]],
[initial_condition[1]],
[0],
'.',
color=traj_initPointColor)
traj_stack.append(plot5)
traj_stack.append(plot3d_initpoint)
if len(traj_stack) != 0:
# mark init:
self.traj_dict[str(initial_condition)] = traj_stack
self.mySystem.update()
def __init__(self):
# superclass constructor
PyplaneMainWindow.__init__(self)
QtCore.pyqtRemoveInputHook()
# check config file if shown by default
self.terminal_toggle = myConfig.get_boolean("Logging", "showTerminal")
self.update_terminal()
# connect buttons ------------------------------------------------------
# connect buttons: system
self.clearButton.clicked.connect(myTrajectories.remove_all)
self.submitButton.clicked.connect(self.submit)
# connect buttons: phase plane
self.PP_SetButton.clicked.connect(lambda: self.myGraph.set_window_range(self.myGraph.plot_pp))
self.PP_ZoomButton.clicked.connect(self.myGraph.plot_pp.toggle_zoom_mode)
self.PP_ZoomButton.setCheckable(True)
self.PP_RefreshButton.clicked.connect(self.myGraph.refresh)
self.PP_CreateTrajectoryButton.clicked.connect(myTrajectories.create_trajectory)
# connect buttons: x(t)
self.X_SetButton.clicked.connect(lambda: self.myGraph.set_window_range(self.myGraph.plot_x))
self.X_ZoomButton.clicked.connect(self.myGraph.plot_x.toggle_zoom_mode)
self.X_ZoomButton.setCheckable(True)
# self.X_ZoomButton.clicked.connect(self.plotCanvas2.zoomMode)
# connect buttons: y(t)
self.Y_SetButton.clicked.connect(lambda: self.myGraph.set_window_range(self.myGraph.plot_y))
self.Y_ZoomButton.clicked.connect(self.myGraph.plot_y.toggle_zoom_mode)
self.Y_ZoomButton.setCheckable(True)
# connect buttons: additional function
self.FctPlotButton.clicked.connect(self.add_function_to_plot)
self.FctClearButton.clicked.connect(self.remove_function_from_plot)
# connect mouse events (left mouse button click) in phase plane
self.myGraph.plot_pp.mpl_connect('button_press_event', self.myGraph.onclick)
self.myGraph.plot_pp.mpl_connect('pick_event', self.myGraph.onpick)
# file menu ------------------------------------------------------
# file
self.file_menu = QtGui.QMenu('&File', self)
self.load = QtGui.QMenu('&Open', self)
self.file_menu.addMenu(self.load)
self.load.addAction('&Recent', self.load_tmp_system)
self.load.addAction('&From File', self.load_system_from_file,
QtCore.Qt.CTRL + QtCore.Qt.Key_O)
self.file_menu.addAction('&Save System As...', self.save_file,
QtCore.Qt.CTRL + QtCore.Qt.Key_S)
self.file_menu.addAction('&Export As...', self.export_as, QtCore.Qt.CTRL + QtCore.Qt.Key_E)
self.file_menu.addAction('&Quit', self.file_quit, QtCore.Qt.CTRL + QtCore.Qt.Key_Q)
self.menuBar().addMenu(self.file_menu)
# show
self.show_menu = QtGui.QMenu('&Show', self)
self.menuBar().addMenu(self.show_menu)
# terminal checkbox
self.toggle_terminal_action = QtGui.QAction('Terminal', self.show_menu)
self.toggle_terminal_action.setCheckable(True)
#self.toggle_nullclines_action.setShortcuts(
if myConfig.get_boolean("Logging", "showTerminal"):
self.toggle_terminal_action.setChecked(True)
# noinspection PyUnresolvedReferences
self.toggle_terminal_action.triggered.connect(self.toggle_terminal)
self.show_menu.addAction(self.toggle_terminal_action)
# vector field checkbox
self.toggle_vectorfield_action = QtGui.QAction('&Plot Vector Field', self.show_menu)
self.toggle_vectorfield_action.setCheckable(True)
if myConfig.get_boolean("Vectorfield", "vf_onByDefault"):
self.toggle_vectorfield_action.setChecked(True)
# noinspection PyUnresolvedReferences
self.toggle_vectorfield_action.triggered.connect(self.vf_helper_function)
self.show_menu.addAction(self.toggle_vectorfield_action)
# streamlines checkbox
self.toggle_streamlines_action = QtGui.QAction('&Plot Streamlines', self.show_menu)
self.toggle_streamlines_action.setCheckable(True)
if myConfig.get_boolean("Streamlines", "stream_onByDefault"):
self.toggle_streamlines_action.setChecked(True)
self.toggle_streamlines_action.triggered.connect(self.sl_helper_function)
self.show_menu.addAction(self.toggle_streamlines_action)
# equilibrium checkbox
self.toggle_equilibrium_action = QtGui.QAction('&Find an Equilibrium Point / Linearize', self.show_menu)
self.toggle_equilibrium_action.setCheckable(True)
self.toggle_equilibrium_action.setChecked(False)
self.toggle_equilibrium_action.triggered.connect(myEquilibria.toggle)
self.show_menu.addAction(self.toggle_equilibrium_action)
#self.show_menu.addAction('&Find an Equilibrium Point', self.myGraph.toggleEP)
# nullclines checkbox
self.toggle_nullclines_action = QtGui.QAction('Nullclines', self.show_menu)
self.toggle_nullclines_action.setCheckable(True)
if myConfig.get_boolean("Nullclines", "nc_onByDefault"):
self.toggle_nullclines_action.setChecked(True)
self.toggle_nullclines_action.triggered.connect(myNullclines.toggle)
self.show_menu.addAction(self.toggle_nullclines_action)
self.show_menu.addAction('&Calculate Nullclines (symbolic)', myNullclines.print_symbolic_nullclines)
# help
self.help_menu = QtGui.QMenu('&Help', self)
self.menuBar().addMenu(self.help_menu)
self.help_menu.addAction('&About', self.about)
# initializing with default values ------------------------------------------------------
self.init()
self.build_settings_tab()
# from now on, plot only log messages as defined in config file.
# for that, call initialize function in myLogger
myLogger.initialize()
def plot_trajectory(self, initial_condition, forward=None, backward=None):
"""
This function plots the solution of the differential equation
depending on the initial condition.
In general, the trajectory consists of three elements:
the forward trajectory, the backward trajectory and the marker for
the initial condition, while each element can be turned off in the
config file / settings tab.
The elements are stored in a list. A dictionary stores this data
with the initalCondition as its key, and the list as the value.
Input variables: - initialCondition (list with x and y
coordinate)
Return variables: - none
"""
if not forward and not backward:
myLogger.warn_message(
"Please select forward and/or backward integration!")
return False
else:
traj_stack = []
traj_integrationtime = float(
myConfig.read("Trajectories", "traj_integrationtime"))
traj_integrationstep = float(
myConfig.read("Trajectories", "traj_integrationstep"))
time = pl.arange(0, traj_integrationtime, traj_integrationstep)
if forward:
# while integrate.ode.successful():
# self.mySystem.jacobian(initialCondition)
assert isinstance(initial_condition, list)
self.x = integrate.odeint(self.mySystem.equation.rhs,
initial_condition, time)
#, full_output=1, printmessg=1, mxstep=20000)
xvalue = self.x[:, 0] # extract the x vector
yvalue = self.x[:, 1] # extract the dx/dt vector
# masking xvalue (deleting invalid entries)
# xvalue = np.ma.masked_outside(xvalue,-1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# myMask = xvalue.mask
# new_time = np.ma.array(self.t, mask=myMask).compressed()
# yvalue = np.ma.array(yvalue, mask=myMask).compressed()
# xvalue = xvalue.compressed()
# QtCore.pyqtRemoveInputHook()
# embed()
# masking yvalue
# yvalue = np.ma.masked_outside(yvalue,-1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# myMask = yvalue.mask
# new_time = np.ma.array(self.t, mask=myMask).compressed()
# xvalue = np.ma.array(xvalue, mask=myMask)
# yvalue = yvalue.compressed()
# QtCore.pyqtRemoveInputHook()
# embed()
# plot solution in phase plane:
traj_ppForwardColor = myConfig.read("Trajectories",
"traj_ppForwardColor")
plot1 = self.mySystem.Phaseplane.Plot.canvas.axes.plot(
xvalue, yvalue, traj_ppForwardColor)
plot3d_forward = self.mySystem.Txy.Plot.canvas.axes.plot(
xvalue, yvalue, time, traj_ppForwardColor)
zero_arrayx = np.array([10] * len(time))
zero_arrayy = np.array([-10] * len(time))
if myConfig.get_boolean("3d-plot", "3d_showXProjection"):
plot3d_forward_projx = self.mySystem.Txy.Plot.canvas.axes.plot(
xvalue, zero_arrayx, time, "0.75")
traj_stack.append(plot3d_forward_projx)
if myConfig.get_boolean("3d-plot", "3d_showYProjection"):
plot3d_forward_projy = self.mySystem.Txy.Plot.canvas.axes.plot(
zero_arrayy, yvalue, time, "0.75")
traj_stack.append(plot3d_forward_projy)
if myConfig.get_boolean("3d-plot", "3d_showYXProjection"):
plot3d_forward_projxy = self.mySystem.Txy.Plot.canvas.axes.plot(
xvalue, yvalue, 0, "0.75")
traj_stack.append(plot3d_forward_projxy)
# numpy array with both x and y values in pairs
# TODO: might be faster if xvalues or yvalues greater than self.mySystem.max_norm
# are masked before calculating the norm
xvalue, yvalue = self.filter_values(xvalue, yvalue)
# THIS HAS BEEN COMMENTED
# z = np.column_stack((xvalue,yvalue))
#
# # put norm of each pair in numpy array
# normed_z = np.array([np.linalg.norm(v) for v in z])
#
# # masking
# max_norm = self.mySystem.max_norm
# masked_normed_z = np.ma.masked_greater(normed_z, max_norm)
# myMask = masked_normed_z.mask
#
# # new xvalue and yvalue
# xvalue = np.ma.array(xvalue, mask=myMask)
# yvalue = np.ma.array(yvalue, mask=myMask)
# UNTIL HERE!
# plot solution in x(t):
traj_x_tColor = myConfig.read("Trajectories", "traj_x_tColor")
plot2 = self.mySystem.Xt.Plot.canvas.axes.plot(
time, xvalue, color=traj_x_tColor)
# plot solution in y(t):
traj_y_tColor = myConfig.read("Trajectories", "traj_y_tColor")
plot3 = self.mySystem.Yt.Plot.canvas.axes.plot(
time, yvalue, color=traj_y_tColor)
# self.myLogger.message("forward trajectory done for initial condition "+str(initialCondition))
traj_stack.append(plot1)
traj_stack.append(plot2)
traj_stack.append(plot3)
traj_stack.append(plot3d_forward)
# backward in time --------------------------------------------
if backward:
self.x_bw = integrate.odeint(self.mySystem.equation.n_rhs,
initial_condition, time)
#, full_output=1, printmessg=1)#, mxstep=5000)
# self.x_bw, infodict2 = integrate.odeint(self.mySystem.n_rhs,
# initialCondition, self.t)#, full_output=1, printmessg=1)#, mxstep=5000)
xvalue_bw = self.x_bw[:, 0]
yvalue_bw = self.x_bw[:, 1]
# # masking xvalue_bw (deleting invalid entries)
# xvalue_bw = np.ma.masked_outside(xvalue_bw,1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# yvalue_bw = np.ma.array(yvalue_bw, mask=xvalue_bw.mask)
# xvalue_bw = xvalue_bw.compressed()
#
# # masking yvalue_bw
# yvalue_bw = np.ma.masked_outside(yvalue_bw,1*self.mySystem.max_norm,
# self.mySystem.max_norm)
# xvalue = np.ma.array(xvalue, mask=yvalue.mask)
# yvalue_bw = yvalue_bw.compressed()
# xvalue, yvalue = self.filter_values(xvalue,yvalue)
# plot in phase plane:
traj_ppBackwardColor = myConfig.read("Trajectories",
"traj_ppBackwardColor")
plot4 = self.mySystem.Phaseplane.Plot.canvas.axes.plot(
xvalue_bw, yvalue_bw, color=traj_ppBackwardColor)
plot3d_backward = self.mySystem.Txy.Plot.canvas.axes.plot(
xvalue_bw, yvalue_bw, -time, traj_ppForwardColor)
zero_arrayx = np.array([10] * len(time))
zero_arrayy = np.array([-10] * len(time))
if myConfig.get_boolean("3d-plot", "3d_showXProjection"):
plot3d_backward_projx = self.mySystem.Txy.Plot.canvas.axes.plot(
xvalue_bw, zero_arrayx, -time, "0.75")
traj_stack.append(plot3d_backward_projx)
if myConfig.get_boolean("3d-plot", "3d_showYProjection"):
plot3d_backwardprojy = self.mySystem.Txy.Plot.canvas.axes.plot(
zero_arrayy, yvalue_bw, -time, "0.75")
traj_stack.append(plot3d_backwardprojy)
if myConfig.get_boolean("3d-plot", "3d_showYXProjection"):
plot3d_backward_projxy = self.mySystem.Txy.Plot.canvas.axes.plot(
xvalue_bw, yvalue_bw, 0, "0.75")
traj_stack.append(plot3d_backward_projxy)
traj_stack.append(plot4)
traj_stack.append(plot3d_backward)
# self.myLogger.message("backward trajectory
# done for initial condition "+str(initialCondition))
# mark init:
if myConfig.get_boolean("Trajectories", "traj_plotInitPoint"):
traj_initPointColor = myConfig.read("Trajectories",
"traj_initPointColor")
plot5 = self.mySystem.Phaseplane.Plot.canvas.axes.plot(
initial_condition[0],
initial_condition[1],
'.',
color=traj_initPointColor)
plot3d_initpoint = self.mySystem.Txy.Plot.canvas.axes.plot(
[initial_condition[0]], [initial_condition[1]], [0],
'.',
color=traj_initPointColor)
traj_stack.append(plot5)
traj_stack.append(plot3d_initpoint)
if len(traj_stack) != 0:
# mark init:
self.traj_dict[str(initial_condition)] = traj_stack
self.mySystem.update()
def clear_graph(self, Graph):
""" This function resets a graph.
Depending on the default values in the config file, the following is shown:
- grid
- minor ticks in x and y direction
- labels on x and y axes
- title
"""
Graph.axes.clear()
if Graph == self.plot_pp:
section = "Phaseplane"
token = "pp_"
elif Graph == self.plot_x:
section = "x-t-plot"
token = "x_"
else:
section = "y-t-plot"
token = "y_"
if myConfig.get_boolean(section, token + "showGrid"):
Graph.axes.grid()
if myConfig.get_boolean(section, token + "showMinorTicks"):
Graph.axes.minorticks_on()
else:
Graph.axes.minorticks_off()
if not myConfig.get_boolean(section, token + "showXTicks"):
Graph.axes.xaxis.set_ticks([])
if not myConfig.get_boolean(section, token + "showYTicks"):
Graph.axes.yaxis.set_ticks([])
if myConfig.get_boolean(section, token + "showXLabel"):
pp_label_fontsize = myConfig.read(section, token + "labelFontSize")
if Graph == self.plot_pp:
xlabel = "$x$"
else:
xlabel = "$t$"
Graph.axes.set_xlabel(xlabel, fontsize=pp_label_fontsize)
if myConfig.get_boolean(section, token + "showTitle"):
title_x_dot = sp.latex(mySystem.what_is_my_system()[0])
title_y_dot = sp.latex(mySystem.what_is_my_system()[1])
Graph.axes.set_title("$\\dot{x} = " + title_x_dot + "$\n$\\dot{y} = " + title_y_dot + "$")
else:
Graph.fig.subplots_adjust(top=0.99)
if myConfig.get_boolean(section, token + "showYLabel"):
pp_label_fontsize = myConfig.read(section, token + "labelFontSize")
if Graph == self.plot_pp:
ylabel = "$\\dot{x}$"
elif Graph == self.plot_x:
ylabel = "$x$"
else:
ylabel = "$y$"
Graph.axes.set_ylabel(ylabel, fontsize=pp_label_fontsize)
if not myConfig.get_boolean(section, token + "showSpines"):
for spine in Graph.axes.spines.itervalues():
spine.set_visible(False)
self.update_graph(Graph)
myLogger.debug_message("Graph cleared")
def add_linearization_tab(self, equilibrium):
# TODO: REFACTOR THIS FUNCTION!!!
# if linearization has not been shown do so, otherwise ignore:
if equilibrium not in self.linearization_stack:
# Set up the user interface from Designer.
myWidget = Ui_Form()
contents = QtGui.QWidget(self.tabWidget)
myWidget.setupUi(contents)
# add content to linearization tab!
self.myLayout_Lin = QtGui.QVBoxLayout(myWidget.frame_lin)
self.plotCanvas_Lin = Canvas(myWidget.frame_lin)
self.myLayout_Lin.addWidget(self.plotCanvas_Lin)
# window range should be equal to window range of phase plane
#limits = self.myGraph.get_limits(self.myGraph.plot_pp)
#print(limits)
#self.myGraph.set_window_range(self.plotCanvas_Lin)
# TODO make set_window_range-funtion reusable for this case
xmin = float(self.PP_xminLineEdit.text())
xmax = float(self.PP_xmaxLineEdit.text())
ymin = float(self.PP_yminLineEdit.text())
ymax = float(self.PP_ymaxLineEdit.text())
self.plotCanvas_Lin.axes.set_xlim(xmin, xmax)
self.plotCanvas_Lin.axes.set_ylim(ymin, ymax)
# window range init
section = "Phaseplane"
token = "pp_"
if myConfig.get_boolean(section, token + "showGrid"):
self.plotCanvas_Lin.axes.grid()
if myConfig.get_boolean(section, token + "showMinorTicks"):
self.plotCanvas_Lin.axes.minorticks_on()
else:
self.plotCanvas_Lin.axes.minorticks_off()
if not myConfig.get_boolean(section, token + "showXTicks"):
self.plotCanvas_Lin.axes.xaxis.set_ticks([])
if not myConfig.get_boolean(section, token + "showYTicks"):
self.plotCanvas_Lin.axes.yaxis.set_ticks([])
if myConfig.get_boolean(section, token + "showXLabel"):
pp_label_fontsize = 9 #myConfig.read(section, token + "labelFontSize")
xlabel = "$x$"
self.plotCanvas_Lin.axes.set_xlabel(xlabel, fontsize=pp_label_fontsize)
if myConfig.get_boolean(section, token + "showYLabel"):
pp_label_fontsize = 9 #myConfig.read(section, token + "labelFontSize")
ylabel = "$\\dot{x}$"
self.plotCanvas_Lin.axes.set_ylabel(ylabel, fontsize=pp_label_fontsize)
if not myConfig.get_boolean(section, token + "showSpines"):
for spine in self.plotCanvas_Lin.axes.spines.itervalues():
spine.set_visible(False)
#self.myGraph.plot_pp.mpl_connect('button_press_event', self.myGraph.onclick)
# plot linearized vectorfield
linearized_vectorfield = VectorfieldHandler()
linearized_vectorfield.register_graph(None, self.plotCanvas_Lin)
# create linearized system
linearized_system = System()
# set system properties
jac = myEquilibria.approx_ep_jacobian(equilibrium)
xe = equilibrium[0]
ye = equilibrium[1]
x_dot_string = str(jac[0,0]) + "*(x-(" + str(xe) + ")) + (" + str(jac[0,1]) + ")*(y-(" + str(ye) + "))"
y_dot_string = str(jac[1,0]) + "*(x-(" + str(xe) + ")) + (" + str(jac[1,1]) + ")*(y-(" + str(ye) + "))"
linearized_system.set_rhs(x_dot_string, y_dot_string)
# set system for vectorfield
linearized_vectorfield.set_system(linearized_system)
#title_matrix = r"$A=\begin{Bmatrix}"+str(jac[0,0])+r" & "+str(jac[0,1])+r" \\"+str(jac[1,0])+r" & "+str(jac[1,1])+r"\end{Bmatrix}$"
# set title
title_matrix = r'$\underline{A}_{' + str(len(self.linearization_stack)) + r'} = \left( \begin{array}{ll} ' + str(jac[0,0]) + r' & ' + str(jac[0,1]) + r'\\ ' + str(jac[1,0]) + r' & ' + str(jac[1,1]) + r' \end{array} \right)$'
# characterize EP:
# stable focus: SFOC
# unstable focus: UFOC
# focus: FOC
# stable node: SNOD
# unstable node: UNOD
# saddle: SAD
# calculating eigenvalues and eigenvectors:
eigenvalues, eigenvectors = myEquilibria.get_eigenval_eigenvec(equilibrium)
# len(eigenvalues) should be 2!
# real_part_1 = np.real(eigenvalues[0])
# imag_part_1 = np.imag(eigenvalues[0])
#
# real_part_2 = np.real(eigenvalues[1])
# imag_part_2 = np.real(eigenvalues[1])
determinant = jac[0,0]*jac[1,1] - jac[1,0]*jac[0,1]
trace = jac[0,0] + jac[1,1]
ep_character = "hm"
if trace==0 and determinant==0:
ep_character = "Unclassified"
elif determinant < 0:
ep_character = "Saddle"
elif (determinant > 0) and (determinant < ((trace**2)/4)):
if trace < 0:
ep_character = "Nodal Sink"
elif trace > 0:
ep_character = "Nodal Source"
elif determinant > ((trace**2)/4):
if trace == 0:
ep_character = "Center"
elif trace < 0:
ep_character = "Spiral Sink"
elif trace > 0:
ep_character = "Spiral Source"
elif determinant == ((trace**2)/4):
if trace < 0:
ep_character = "Sink"
elif trace > 0:
ep_character = "Source"
# plot eigenvectors:
# eigenvalues = eigenvalues.tolist()
# eigenvectors = eigenvectors.tolist()
#
# for i in xrange(0, len(eigenvectors)):
# x, y = equilibrium[0], equilibrium[1]
# dx, dy = eigenvectors[i][0], eigenvectors[i][1]
#
# vector = [x, y, dx, dy]
#
# self.myGraph.plot_vector(self.plotCanvas_Lin, vector)
if myConfig.get_boolean(section, token + "showTitle"):
title1 = str(ep_character) + r': (' + str(equilibrium[0]) + r', ' + str(equilibrium[1]) + r')'
#self.plotCanvas_Lin.axes.set_title(str(title1)+"$\n$\\dot{x} = " + x_dot_string + "$\n$\\dot{y} = " + y_dot_string + "$", loc='center')
self.plotCanvas_Lin.axes.set_title(r'$' + str(title1)+"$\n"+title_matrix, fontsize=11)
else:
self.plotCanvas_Lin.fig.subplots_adjust(top=0.99)
# mark EP in linearized tab
self.plotCanvas_Lin.axes.plot(equilibrium[0], equilibrium[1],'ro')
# add annotation in phaseplane
label = str(ep_character)
self.plotCanvas1.axes.text(equilibrium[0], equilibrium[1], label, fontsize=10)
self.plotCanvas1.draw()
# plot vectorfield
linearized_vectorfield.update()
self.plotCanvas_Lin.draw()
title = str(ep_character)
self.index = self.tabWidget.addTab(contents, title)
self.linearization_stack.append(equilibrium)
def __init__(self):
# superclass constructor
PyplaneMainWindow.__init__(self)
QtCore.pyqtRemoveInputHook()
# If set to True the app crashes under MS Windows if it is immediately closed after startup without any
# further actions
sip.setdestroyonexit(False)
# Set Version-number
self.setWindowTitle("PyPlane " + self.__PYPLANE_VERSION)
# check config file if shown by default
self.terminal_toggle = myConfig.get_boolean("Logging",
"log_showTerminal")
self.update_terminal()
# # connect buttons ------------------------------------------------------
# # connect buttons: system
self.clearButton.clicked.connect(self.clear_trajectories)
self.submitButton.clicked.connect(self.submit)
# # connect buttons: additional function
self.FctPlotButton.clicked.connect(self.add_function)
self.FctClearButton.clicked.connect(self.remove_functions)
# file menu ------------------------------------------------------
# file
self.file_menu = QtWidgets.QMenu('&System', self)
self.load = QtWidgets.QMenu('&Open', self)
self.file_menu.addMenu(self.load)
self.load.addAction('&Recent', self.load_tmp_system)
self.load.addAction('&From File', self.load_system_from_file,
QtCore.Qt.CTRL + QtCore.Qt.Key_O)
self.file_menu.addAction('&Save As...', self.save_file,
QtCore.Qt.CTRL + QtCore.Qt.Key_S)
self.file_menu.addAction('&Export As...', self.export_as,
QtCore.Qt.CTRL + QtCore.Qt.Key_E)
self.file_menu.addAction('&Close', self.close_current_tab,
QtCore.Qt.CTRL + QtCore.Qt.Key_W)
# self.file_menu.addAction('&Close All', self.close_all_tabs, QtCore.Qt.CTRL + QtCore.Qt.ShiftModifier + QtCore.Qt.Key_W)
self.file_menu.addAction('&Quit', self.file_quit,
QtCore.Qt.CTRL + QtCore.Qt.Key_Q)
self.menuBar().addMenu(self.file_menu)
# show
self.show_menu = QtWidgets.QMenu('&Show', self)
self.menuBar().addMenu(self.show_menu)
# terminal checkbox
self.toggle_terminal_action = QtWidgets.QAction(
'Terminal', self.show_menu)
self.toggle_terminal_action.setShortcut(QtCore.Qt.CTRL +
QtCore.Qt.Key_T)
self.toggle_terminal_action.setCheckable(True)
if myConfig.get_boolean("Logging", "log_showTerminal"):
self.toggle_terminal_action.setChecked(True)
self.toggle_terminal_action.triggered.connect(self.toggle_terminal)
self.show_menu.addAction(self.toggle_terminal_action)
# vector field checkbox
self.toggle_vectorfield_action = QtWidgets.QAction(
'&Plot Vector Field', self.show_menu)
self.toggle_vectorfield_action.setShortcut(QtCore.Qt.CTRL +
QtCore.Qt.Key_V)
self.toggle_vectorfield_action.setCheckable(True)
# if myConfig.get_boolean("Vectorfield", "vf_onByDefault"):
# self.toggle_vectorfield_action.setChecked(True)
self.toggle_vectorfield_action.triggered.connect(
self.vf_helper_function)
self.show_menu.addAction(self.toggle_vectorfield_action)
# streamlines checkbox
self.toggle_streamlines_action = QtWidgets.QAction(
'&Plot Streamlines', self.show_menu)
self.toggle_streamlines_action.setCheckable(True)
# if myConfig.get_boolean("Streamlines", "stream_onByDefault"):
# self.toggle_streamlines_action.setChecked(True)
self.toggle_streamlines_action.triggered.connect(
self.sl_helper_function)
self.show_menu.addAction(self.toggle_streamlines_action)
# equilibrium checkbox
self.toggle_equilibrium_action = QtWidgets.QAction(
'&Find an Equilibrium Point / Linearize', self.show_menu)
self.toggle_equilibrium_action.setCheckable(True)
# self.toggle_equilibrium_action.setChecked(False)
self.toggle_equilibrium_action.triggered.connect(
self.eq_helper_function)
self.show_menu.addAction(self.toggle_equilibrium_action)
#self.show_menu.addAction('&Find an Equilibrium Point', self.myGraph.toggleEP)
# linearize checkbox
# self.linearize_action = QtWidgets.QAction('&Linearize', self.show_menu)
# self.linearize_action.triggered.connect(self.linearize_helper_function)
# self.show_menu.addAction(self.linearize_action)
# nullclines checkbox
self.toggle_nullclines_action = QtWidgets.QAction(
'Nullclines', self.show_menu)
self.toggle_nullclines_action.setShortcut(QtCore.Qt.CTRL +
QtCore.Qt.Key_N)
self.toggle_nullclines_action.setCheckable(True)
# if system exists: read toggle-value
# if not: read from config
# TODO: new systems tab chosen -> check/uncheck toggle!
# if self.systems == []:
# read current systems tab:
# if myConfig.get_boolean("Nullclines", "nc_onByDefault"):
# self.toggle_nullclines_action.setChecked(True)
self.toggle_nullclines_action.triggered.connect(self.toggle_nullclines)
self.show_menu.addAction(self.toggle_nullclines_action)
# self.show_menu.addAction('&Calculate Nullclines (symbolic)', myNullclines.print_symbolic_nullclines)
# help
self.help_menu = QtWidgets.QMenu('&Help', self)
self.menuBar().addMenu(self.help_menu)
self.help_menu.addAction('&About', self.about)
# initializing with default values ------------------------------------------------------
self.init()
# self.build_settings_tab()
# from now on, plot only log messages as defined in config file.
# for that, call initialize function in myLogger
myLogger.initialize()
def __init__(self):
# superclass constructor
PyplaneMainWindow.__init__(self)
QtCore.pyqtRemoveInputHook()
# If set to True the app crashes under MS Windows if it is immediately closed after startup without any
# further actions
sip.setdestroyonexit(False)
# Set Version-number
self.setWindowTitle("PyPlane " + self.__PYPLANE_VERSION)
# check config file if shown by default
self.terminal_toggle = myConfig.get_boolean("Logging", "showTerminal")
self.update_terminal()
#~ # connect buttons ------------------------------------------------------
#~ # connect buttons: system
self.clearButton.clicked.connect(self.clear_trajectories)
self.submitButton.clicked.connect(self.submit)
#~ # connect buttons: additional function
self.FctPlotButton.clicked.connect(self.add_function)
self.FctClearButton.clicked.connect(self.remove_functions)
# file menu ------------------------------------------------------
# file
self.file_menu = QtGui.QMenu('&System', self)
self.load = QtGui.QMenu('&Open', self)
self.file_menu.addMenu(self.load)
self.load.addAction('&Recent', self.load_tmp_system)
self.load.addAction('&From File', self.load_system_from_file,
QtCore.Qt.CTRL + QtCore.Qt.Key_O)
self.file_menu.addAction('&Save As...', self.save_file,
QtCore.Qt.CTRL + QtCore.Qt.Key_S)
self.file_menu.addAction('&Export As...', self.export_as, QtCore.Qt.CTRL + QtCore.Qt.Key_E)
self.file_menu.addAction('&Close', self.close_current_tab, QtCore.Qt.CTRL + QtCore.Qt.Key_W)
#~ self.file_menu.addAction('&Close All', self.close_all_tabs, QtCore.Qt.CTRL + QtCore.Qt.ShiftModifier + QtCore.Qt.Key_W)
self.file_menu.addAction('&Quit', self.file_quit, QtCore.Qt.CTRL + QtCore.Qt.Key_Q)
self.menuBar().addMenu(self.file_menu)
# show
self.show_menu = QtGui.QMenu('&Show', self)
self.menuBar().addMenu(self.show_menu)
# terminal checkbox
self.toggle_terminal_action = QtGui.QAction('Terminal', self.show_menu)
self.toggle_terminal_action.setShortcut(QtCore.Qt.CTRL + QtCore.Qt.Key_T)
self.toggle_terminal_action.setCheckable(True)
if myConfig.get_boolean("Logging", "showTerminal"):
self.toggle_terminal_action.setChecked(True)
self.toggle_terminal_action.triggered.connect(self.toggle_terminal)
self.show_menu.addAction(self.toggle_terminal_action)
# vector field checkbox
self.toggle_vectorfield_action = QtGui.QAction('&Plot Vector Field', self.show_menu)
self.toggle_vectorfield_action.setShortcut(QtCore.Qt.CTRL + QtCore.Qt.Key_V)
self.toggle_vectorfield_action.setCheckable(True)
#~ if myConfig.get_boolean("Vectorfield", "vf_onByDefault"):
#~ self.toggle_vectorfield_action.setChecked(True)
self.toggle_vectorfield_action.triggered.connect(self.vf_helper_function)
self.show_menu.addAction(self.toggle_vectorfield_action)
# streamlines checkbox
self.toggle_streamlines_action = QtGui.QAction('&Plot Streamlines', self.show_menu)
self.toggle_streamlines_action.setCheckable(True)
#~ if myConfig.get_boolean("Streamlines", "stream_onByDefault"):
#~ self.toggle_streamlines_action.setChecked(True)
self.toggle_streamlines_action.triggered.connect(self.sl_helper_function)
self.show_menu.addAction(self.toggle_streamlines_action)
# equilibrium checkbox
self.toggle_equilibrium_action = QtGui.QAction('&Find an Equilibrium Point / Linearize', self.show_menu)
self.toggle_equilibrium_action.setCheckable(True)
#~ self.toggle_equilibrium_action.setChecked(False)
self.toggle_equilibrium_action.triggered.connect(self.eq_helper_function)
self.show_menu.addAction(self.toggle_equilibrium_action)
#self.show_menu.addAction('&Find an Equilibrium Point', self.myGraph.toggleEP)
# linearize checkbox
#~ self.linearize_action = QtGui.QAction('&Linearize', self.show_menu)
#~ self.linearize_action.triggered.connect(self.linearize_helper_function)
#~ self.show_menu.addAction(self.linearize_action)
# nullclines checkbox
self.toggle_nullclines_action = QtGui.QAction('Nullclines', self.show_menu)
self.toggle_nullclines_action.setShortcut(QtCore.Qt.CTRL + QtCore.Qt.Key_N)
self.toggle_nullclines_action.setCheckable(True)
# if system exists: read toggle-value
# if not: read from config
# TODO: new systems tab chosen -> check/uncheck toggle!
#~ if self.systems == []:
# read current systems tab:
#~ if myConfig.get_boolean("Nullclines", "nc_onByDefault"):
#~ self.toggle_nullclines_action.setChecked(True)
self.toggle_nullclines_action.triggered.connect(self.toggle_nullclines)
self.show_menu.addAction(self.toggle_nullclines_action)
#~ self.show_menu.addAction('&Calculate Nullclines (symbolic)', myNullclines.print_symbolic_nullclines)
# help
self.help_menu = QtGui.QMenu('&Help', self)
self.menuBar().addMenu(self.help_menu)
self.help_menu.addAction('&About', self.about)
# initializing with default values ------------------------------------------------------
self.init()
#~ self.build_settings_tab()
# from now on, plot only log messages as defined in config file.
# for that, call initialize function in myLogger
myLogger.initialize()
def clear_graph(self, Graph):
""" This function resets a graph.
Depending on the default values in the config file, the following is shown:
- grid
- minor ticks in x and y direction
- labels on x and y axes
- title
"""
Graph.axes.clear()
if Graph == self.plot_pp:
section = "Phaseplane"
token = "pp_"
elif Graph == self.plot_x:
section = "x-t-plot"
token = "x_"
else:
section = "y-t-plot"
token = "y_"
if myConfig.get_boolean(section, token + "showGrid"):
Graph.axes.grid()
if myConfig.get_boolean(section, token + "showMinorTicks"):
Graph.axes.minorticks_on()
else:
Graph.axes.minorticks_off()
if not myConfig.get_boolean(section, token + "showXTicks"):
Graph.axes.xaxis.set_ticks([])
if not myConfig.get_boolean(section, token + "showYTicks"):
Graph.axes.yaxis.set_ticks([])
if myConfig.get_boolean(section, token + "showXLabel"):
pp_label_fontsize = myConfig.read(section, token + "labelFontSize")
if Graph == self.plot_pp:
xlabel = "$x$"
else:
xlabel = "$t$"
Graph.axes.set_xlabel(xlabel, fontsize=pp_label_fontsize)
if myConfig.get_boolean(section, token + "showTitle"):
title_x_dot = sp.latex(mySystem.what_is_my_system()[0])
title_y_dot = sp.latex(mySystem.what_is_my_system()[1])
Graph.axes.set_title("$\\dot{x} = " + title_x_dot +
"$\n$\\dot{y} = " + title_y_dot + "$")
else:
Graph.fig.subplots_adjust(top=0.99)
if myConfig.get_boolean(section, token + "showYLabel"):
pp_label_fontsize = myConfig.read(section, token + "labelFontSize")
if Graph == self.plot_pp:
ylabel = "$\\dot{x}$"
elif Graph == self.plot_x:
ylabel = "$x$"
else:
ylabel = "$y$"
Graph.axes.set_ylabel(ylabel, fontsize=pp_label_fontsize)
if not myConfig.get_boolean(section, token + "showSpines"):
for spine in Graph.axes.spines.itervalues():
spine.set_visible(False)
self.update_graph(Graph)
myLogger.debug_message("Graph cleared")
