def uhs2param_init(config_file):
# ---------------------------------------------------------------- #
# Read Configuration files
config_dict = read_config(config_file)
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Setup Directory Structures
directories = make_directories(config_dict['OPTIONS']['CASE_DIR'],
['plots', 'logs', 'params', 'inputs'])
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# copy inputs to $case_dir/inputs and update configuration
config_dict = copy_inputs(config_file, directories['inputs'])
options = config_dict['OPTIONS']
config_dict['POUR_POINTS'] = {'FILE_NAME': config_dict['UHS_FILES']['STATION_FILE']}
config_dict['ROUTING']['FILE_NAME'] = 'unknown'
config_dict['UH_BOX'] = {'FILE_NAME': 'unknown'}
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Start Logging
log = init_logger(directories['logs'], options['LOG_LEVEL'],
options['VERBOSE'])
for direc in directories:
log.info('%s directory is %s' % (direc, directories[direc]))
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read domain file (if applicable)
dom_data, DomVats, DomGats = read_domain(config_dict['DOMAIN'])
log.info('Opened Domain File: %s' % config_dict['DOMAIN']['FILE_NAME'])
if 'NEW_DOMAIN' in config_dict:
new_dom_data, new_DomVats, \
new_DomGats = read_domain(config_dict['NEW_DOMAIN'])
log.info('Opened New Domain File: %s',
config_dict['NEW_DOMAIN']['FILE_NAME'])
else:
new_dom_data = None
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read station file
outlets = read_station_file(config_dict['UHS_FILES']['STATION_FILE'],
dom_data, config_dict)
# ---------------------------------------------------------------- #
return dom_data, new_dom_data, outlets, config_dict, directories
def gen_uh_init(config_file):
"""Initialize RVIC parameter"""
# ---------------------------------------------------------------- #
# Read Configuration files
config_dict = read_config(config_file)
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Import optional modules
if config_dict['OPTIONS']['REMAP'] and not remap_available:
raise ValueError('Problem importing remap module '
'check to make sure cdo.py is available)')
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Setup Directory Structures
directories = make_directories(config_dict['OPTIONS']['CASE_DIR'],
['plots', 'logs', 'params', 'inputs'])
directories.update(
make_directories(config_dict['OPTIONS']['TEMP_DIR'],
['aggregated', 'remapped']))
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# copy inputs to $case_dir/inputs and update configuration
config_dict = copy_inputs(config_file, directories['inputs'])
options = config_dict['OPTIONS']
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Start Logging
log = init_logger(directories['logs'], options['LOG_LEVEL'],
options['VERBOSE'])
for direc in directories:
log.info('%s directory is %s', direc, directories[direc])
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read Pour Points files
try:
pour_points = pd.read_csv(config_dict['POUR_POINTS']['FILE_NAME'],
comment='#')
log.info('Opened Pour Points File: '
'{0}'.format(config_dict['POUR_POINTS']['FILE_NAME']))
if not (all(x in pour_points.keys()
for x in ['lons', 'lats']) or all(x in pour_points.keys()
for x in ['x', 'y'])):
raise ValueError('Pour Points File must include '
'variables (lons, lats) or (x, y)')
if 'names' in pour_points:
pour_points.fillna(inplace=True, value='unknown')
for i, name in enumerate(pour_points.names):
pour_points.names[i] = strip_invalid_char(name)
pour_points.drop_duplicates(inplace=True)
pour_points.dropna()
except Exception as e:
log.error('Error opening pour points file: '
'{0}'.format(config_dict['POUR_POINTS']['FILE_NAME']))
log.exception(e)
raise
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read uh box file
uh_file = config_dict['UH_BOX']['FILE_NAME']
uh_header = int(config_dict['UH_BOX']['HEADER_LINES'])
uh_box = {}
try:
uh_box['time'], uh_box['func'] = np.genfromtxt(uh_file,
skip_header=uh_header,
delimiter=',',
unpack=True)
log.info('Opened UHbox File: '
'{0}'.format(config_dict['UH_BOX']['FILE_NAME']))
except:
log.exception('Error opening uh_box file: '
'{0}'.format(config_dict['POUR_POINTS']['FILE_NAME']))
raise
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read FDR file
fdr_file = config_dict['ROUTING']['FILE_NAME']
fdr_var = config_dict['ROUTING']['FLOW_DIRECTION_VAR']
fdr_lat = config_dict['ROUTING']['LATITUDE_VAR']
fdr_lon = config_dict['ROUTING']['LONGITUDE_VAR']
fdr_vel = config_dict['ROUTING']['VELOCITY']
fdr_dif = config_dict['ROUTING']['DIFFUSION']
try:
fdr_data, fdr_vatts, _ = read_netcdf(fdr_file)
fdr_shape = fdr_data[fdr_var].shape
# ---------------------------------------------------------------- #
# Check latitude order, flip if necessary.
if fdr_data[fdr_lat][-1] > fdr_data[fdr_lat][0]:
log.debug('Flow Direction inputs came in upside down, flipping '
'everything now.')
remove_vars = []
for var, data in fdr_data.iteritems():
log.debug('flipping %s', var)
if data.ndim >= 1 and var != fdr_lon:
fdr_data[var] = np.flipud(data)
elif data.ndim == 0:
remove_vars.append(var)
if remove_vars:
for var in remove_vars:
del fdr_data[var]
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Add velocity and/or diffusion grids if not present yet
if not type(fdr_vel) == str:
fdr_data['velocity'] = np.zeros(fdr_shape) + fdr_vel
config_dict['ROUTING']['VELOCITY'] = 'velocity'
log.info('Added velocity grid to fdr_data')
if not type(fdr_dif) == str:
fdr_data['diffusion'] = np.zeros(fdr_shape) + fdr_dif
config_dict['ROUTING']['DIFFUSION'] = 'diffusion'
log.info('Added diffusion grid to fdr_data')
if ('SOURCE_AREA_VAR' not in config_dict['ROUTING']
or config_dict['ROUTING']['SOURCE_AREA_VAR'] not in fdr_data):
log.warning('Upstream `SOURCE_AREA` was not provided, output '
'source area will be zero.')
config_dict['ROUTING']['SOURCE_AREA_VAR'] = 'src_area'
fdr_data[config_dict['ROUTING']['SOURCE_AREA_VAR']] = \
np.zeros(fdr_shape)
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
fdr_data['resolution'] = np.abs(fdr_data[fdr_lon][1] -
fdr_data[fdr_lon][0])
check_ncvars(config_dict['ROUTING'], fdr_data.keys())
# ---------------------------------------------------------------- #
log.info('Opened FDR File: {0}'.format(fdr_file))
except:
log.exception('Error opening FDR file')
raise
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read domain file
domain = config_dict['DOMAIN']
dom_data, _, _ = read_domain(domain)
log.info('Opened Domain File: ' '{0}'.format(domain['FILE_NAME']))
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# If remap is False, domain coordinates needs to be in the fdr coordinates
# We can move the unit hydrographs to the domain grid later
if options['AGGREGATE'] and not options['REMAP']:
log.error('RVIC parameter generation requires REMAP option to be True'
' if AGGREGATE is True')
raise ValueError('Invalid option')
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Group pour points (if aggregate)
if options['AGGREGATE']:
outlets = make_agg_pairs(pour_points, dom_data, fdr_data, config_dict)
log.info('Finished making agg pairs of '
'pour points and outlet grid cells')
else:
outlets = {}
if all(x in pour_points.keys() for x in ['x', 'y', 'lons', 'lats']):
lats = pour_points['lats'].values
lons = pour_points['lons'].values
routys = pour_points['y'].values
routxs = pour_points['x'].values
elif all(x in pour_points.keys() for x in ['x', 'y']):
# use x and y (assume from routing inputs grid)
# find lons and lats from xs and ys
routys = pour_points['y'].values
routxs = pour_points['x'].values
lats = fdr_data[fdr_lat][routys]
lons = fdr_data[fdr_lon][routxs]
else:
# use lons and lats to find xs and ys
lats = pour_points['lats'].values
lons = pour_points['lons'].values
# find x and y on routing grid
routys, routxs = latlon2yx(plats=lats,
plons=lons,
glats=fdr_data[fdr_lat],
glons=fdr_data[fdr_lon])
if options['SEARCH_FOR_CHANNEL']:
routys, routxs = search_for_channel(
fdr_data[config_dict['ROUTING']['SOURCE_AREA_VAR']],
routys,
routxs,
tol=10,
search=2)
# update lats and lons
lats = fdr_data[fdr_lat][routys]
lons = fdr_data[fdr_lon][routxs]
# Find location on domain grid
domys, domxs = latlon2yx(plats=lats,
plons=lons,
glats=dom_data[domain['LATITUDE_VAR']],
glons=dom_data[domain['LONGITUDE_VAR']])
for i in xrange(len(lats)):
if 'names' in pour_points.keys():
name = pour_points['names'].values[i]
name = name.replace("'", '').replace(" ", "_")
else:
# fill name filed with p-outlet_num
name = 'p-{0}'.format(i)
outlets[i] = Point(lat=lats[i],
lon=lons[i],
domx=domxs[i],
domy=domys[i],
routx=routxs[i],
routy=routys[i],
name=name,
cell_id=dom_data['cell_ids'][domys[i],
domxs[i]])
outlets[i].pour_points = [outlets[i]]
# ---------------------------------------------------------------- #
log.debug(outlets)
log.info('Finished with gen_uh_init')
log.info('-------------------------------------------------------------\n')
return (uh_box, fdr_data, fdr_vatts, dom_data, outlets, config_dict,
directories)
def gen_uh_init(config_file):
"""Initialize RVIC parameter"""
# ---------------------------------------------------------------- #
# Read Configuration files
config_dict = read_config(config_file)
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Import optional modules
if config_dict['OPTIONS']['REMAP'] and not remap_available:
raise ValueError('Problem importing remap module '
'check to make sure cdo.py is available)')
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Setup Directory Structures
directories = make_directories(config_dict['OPTIONS']['CASE_DIR'],
['plots', 'logs', 'params', 'inputs'])
directories.update(make_directories(config_dict['OPTIONS']['TEMP_DIR'],
['aggregated', 'remapped']))
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# copy inputs to $case_dir/inputs and update configuration
config_dict = copy_inputs(config_file, directories['inputs'])
options = config_dict['OPTIONS']
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Start Logging
log = init_logger(directories['logs'], options['LOG_LEVEL'],
options['VERBOSE'])
for direc in directories:
log.info('%s directory is %s', direc, directories[direc])
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read Pour Points files
try:
pour_points = pd.read_csv(config_dict['POUR_POINTS']['FILE_NAME'],
comment='#')
log.info('Opened Pour Points File: '
'{0}'.format(config_dict['POUR_POINTS']['FILE_NAME']))
if not (all(x in pour_points.keys() for x in ['lons', 'lats']) or
all(x in pour_points.keys() for x in ['x', 'y'])):
raise ValueError('Pour Points File must include '
'variables (lons, lats) or (x, y)')
if 'names' in pour_points:
pour_points.fillna(inplace=True, value='unknown')
for i, name in enumerate(pour_points.names):
pour_points.names[i] = strip_invalid_char(name)
pour_points.drop_duplicates(inplace=True)
pour_points.dropna()
except Exception as e:
log.error('Error opening pour points file: '
'{0}'.format(config_dict['POUR_POINTS']['FILE_NAME']))
log.exception(e)
raise
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read uh box file
uh_file = config_dict['UH_BOX']['FILE_NAME']
uh_header = int(config_dict['UH_BOX']['HEADER_LINES'])
uh_box = {}
try:
uh_box['time'], uh_box['func'] = np.genfromtxt(uh_file,
skip_header=uh_header,
delimiter=',',
unpack=True)
log.info('Opened UHbox File: '
'{0}'.format(config_dict['UH_BOX']['FILE_NAME']))
except:
log.exception('Error opening uh_box file: '
'{0}'.format(config_dict['POUR_POINTS']['FILE_NAME']))
raise
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read FDR file
fdr_file = config_dict['ROUTING']['FILE_NAME']
fdr_var = config_dict['ROUTING']['FLOW_DIRECTION_VAR']
fdr_lat = config_dict['ROUTING']['LATITUDE_VAR']
fdr_lon = config_dict['ROUTING']['LONGITUDE_VAR']
fdr_vel = config_dict['ROUTING']['VELOCITY']
fdr_dif = config_dict['ROUTING']['DIFFUSION']
try:
fdr_data, fdr_vatts, _ = read_netcdf(fdr_file)
fdr_shape = fdr_data[fdr_var].shape
# ---------------------------------------------------------------- #
# Check latitude order, flip if necessary.
if fdr_data[fdr_lat][-1] > fdr_data[fdr_lat][0]:
log.debug('Flow Direction inputs came in upside down, flipping '
'everything now.')
remove_vars = []
for var, data in fdr_data.iteritems():
log.debug('flipping %s', var)
if data.ndim >= 1 and var != fdr_lon:
fdr_data[var] = np.flipud(data)
elif data.ndim == 0:
remove_vars.append(var)
if remove_vars:
for var in remove_vars:
del fdr_data[var]
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Add velocity and/or diffusion grids if not present yet
if not type(fdr_vel) == str:
fdr_data['velocity'] = np.zeros(fdr_shape) + fdr_vel
config_dict['ROUTING']['VELOCITY'] = 'velocity'
log.info('Added velocity grid to fdr_data')
if not type(fdr_dif) == str:
fdr_data['diffusion'] = np.zeros(fdr_shape) + fdr_dif
config_dict['ROUTING']['DIFFUSION'] = 'diffusion'
log.info('Added diffusion grid to fdr_data')
if ('SOURCE_AREA_VAR' not in config_dict['ROUTING'] or
config_dict['ROUTING']['SOURCE_AREA_VAR'] not in fdr_data):
log.warning('Upstream `SOURCE_AREA` was not provided, output '
'source area will be zero.')
config_dict['ROUTING']['SOURCE_AREA_VAR'] = 'src_area'
fdr_data[config_dict['ROUTING']['SOURCE_AREA_VAR']] = \
np.zeros(fdr_shape)
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
fdr_data['resolution'] = np.abs(fdr_data[fdr_lon][1] -
fdr_data[fdr_lon][0])
check_ncvars(config_dict['ROUTING'], fdr_data.keys())
# ---------------------------------------------------------------- #
log.info('Opened FDR File: {0}'.format(fdr_file))
except:
log.exception('Error opening FDR file')
raise
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Read domain file
domain = config_dict['DOMAIN']
dom_data, _, _ = read_domain(domain)
log.info('Opened Domain File: '
'{0}'.format(domain['FILE_NAME']))
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# If remap is False, domain coordinates needs to be in the fdr coordinates
# We can move the unit hydrographs to the domain grid later
if options['AGGREGATE'] and not options['REMAP']:
log.error('RVIC parameter generation requires REMAP option to be True'
' if AGGREGATE is True')
raise ValueError('Invalid option')
# ---------------------------------------------------------------- #
# ---------------------------------------------------------------- #
# Group pour points (if aggregate)
if options['AGGREGATE']:
outlets = make_agg_pairs(pour_points, dom_data, fdr_data, config_dict)
log.info('Finished making agg pairs of '
'pour points and outlet grid cells')
else:
outlets = {}
if all(x in pour_points.keys() for x in ['x', 'y', 'lons', 'lats']):
lats = pour_points['lats'].values
lons = pour_points['lons'].values
routys = pour_points['y'].values
routxs = pour_points['x'].values
elif all(x in pour_points.keys() for x in ['x', 'y']):
# use x and y (assume from routing inputs grid)
# find lons and lats from xs and ys
routys = pour_points['y'].values
routxs = pour_points['x'].values
lats = fdr_data[fdr_lat][routys]
lons = fdr_data[fdr_lon][routxs]
else:
# use lons and lats to find xs and ys
lats = pour_points['lats'].values
lons = pour_points['lons'].values
# find x and y on routing grid
routys, routxs = latlon2yx(plats=lats,
plons=lons,
glats=fdr_data[fdr_lat],
glons=fdr_data[fdr_lon])
if options['SEARCH_FOR_CHANNEL']:
routys, routxs = search_for_channel(
fdr_data[config_dict['ROUTING']['SOURCE_AREA_VAR']],
routys, routxs, tol=10, search=2)
# update lats and lons
lats = fdr_data[fdr_lat][routys]
lons = fdr_data[fdr_lon][routxs]
# Find location on domain grid
domys, domxs = latlon2yx(plats=lats,
plons=lons,
glats=dom_data[domain['LATITUDE_VAR']],
glons=dom_data[domain['LONGITUDE_VAR']])
for i in xrange(len(lats)):
if 'names' in pour_points.keys():
name = pour_points['names'].values[i]
name = name.replace("'", '').replace(" ", "_")
else:
# fill name filed with p-outlet_num
name = 'p-{0}'.format(i)
outlets[i] = Point(lat=lats[i],
lon=lons[i],
domx=domxs[i],
domy=domys[i],
routx=routxs[i],
routy=routys[i],
name=name,
cell_id=dom_data['cell_ids'][domys[i],
domxs[i]])
outlets[i].pour_points = [outlets[i]]
# ---------------------------------------------------------------- #
log.debug(outlets)
log.info('Finished with gen_uh_init')
log.info('-------------------------------------------------------------\n')
return (uh_box, fdr_data, fdr_vatts, dom_data, outlets,
config_dict, directories)