def create_action_from_ops(ops, simplify=False):
if len(ops) > 0:
from core.vistrail.action import Action
action = db.services.action.create_action_from_ops(ops, simplify)
Action.convert(action)
return action
return None
def create_action(op_list):
if len(op_list) > 0:
from core.vistrail.action import Action
action = db.services.action.create_action(op_list)
Action.convert(action)
return action
return None
def convert(_abstraction):
if _abstraction.__class__ == Abstraction:
return
_abstraction.__class__ = Abstraction
for _action in _abstraction.action_list:
Action.convert(_action)
for _tag in _abstraction.tag_list:
Tag.convert(_tag)
def add_action(self, action, parent):
Action.convert(action)
if action.id < 0:
action.id = self.idScope.getNewId(action.vtType)
action.prevId = parent
for op in action.operations:
if op.id < 0:
op.id = self.idScope.getNewId('operation')
self.add_version(action)
def create_action(self, id_scope=None):
from core.vistrail.action import Action
from core.vistrail.module import Module
from core.vistrail.module_function import ModuleFunction
from core.vistrail.module_param import ModuleParam
from core.vistrail.operation import AddOp
from db.domain import IdScope
from datetime import datetime
if id_scope is None:
id_scope = IdScope()
param = ModuleParam(id=id_scope.getNewId(ModuleParam.vtType),
type='Integer',
val='1')
function = ModuleFunction(id=id_scope.getNewId(ModuleFunction.vtType),
name='value',
parameters=[param])
m = Module(id=id_scope.getNewId(Module.vtType),
name='Float',
package='edu.utah.sci.vistrails.basic',
functions=[function])
add_op = AddOp(id=id_scope.getNewId('operation'),
what='module',
objectId=m.id,
data=m)
action = Action(id=id_scope.getNewId(Action.vtType),
prevId=0,
date=datetime(2007, 11, 18),
operations=[add_op])
return action
def create_action(action_list):
"""create_action(action_list: list) -> Action
where action_list is a list of tuples
(
type,
object,
parent_type=None,
parent_id=None,
new_obj=None
)
and the method returns a *single* action that accomplishes all
of the operations.
Examples: create_action([('add', module1), ('delete', connection2)]
create_action([('add', param1, 'function', function1),
('change', old_func, new_func, 'module', m1)])
Note that create_action([('add', module)]) adds a module and *all* of its
children.
"""
action = db.services.action.create_action(action_list)
Action.convert(action)
return action
def positionPipelines(self, sheetPrefix, sheetCount, rowCount, colCount,
pipelines):
""" positionPipelines(sheetPrefix: str, sheetCount: int, rowCount: int,
colCount: int, pipelines: list of Pipeline)
-> list of Pipelines
Apply the virtual cell location to a list of pipelines in a
parameter exploration given that pipelines has multiple chunk
of sheetCount x rowCount x colCount cells
"""
(vRCount, vCCount, cells) = self.getConfiguration()
modifiedPipelines = []
for pId in xrange(len(pipelines)):
pipeline = copy.copy(pipelines[pId])
col = pId % colCount
row = (pId / colCount) % rowCount
sheet = (pId / (colCount*rowCount)) % sheetCount
decodedCells = self.decodeConfiguration(pipeline, cells)
for (mId, vRow, vCol) in decodedCells:
# Walk through all connection and remove all
# CellLocation connected to this spreadsheet cell
# delConn = DeleteConnectionAction()
action_list = []
for (cId,c) in self.pipeline.connections.iteritems():
if (c.destinationId==mId and
pipeline.modules[c.sourceId].name=="CellLocation"):
action_list.append(('delete', c))
# delConn.addId(cId)
# delConn.perform(pipeline)
action = db.services.action.create_action(action_list)
# FIXME: this should go to dbservice
Action.convert(action)
pipeline.perform_action(action)
# Add a sheet reference with a specific name
param_id = -pipeline.tmp_id.getNewId(ModuleParam.vtType)
sheetNameParam = ModuleParam(id=param_id,
pos=0,
name="",
val="%s %d" % (sheetPrefix, sheet),
type="String",
alias="",
)
function_id = -pipeline.tmp_id.getNewId(ModuleFunction.vtType)
sheetNameFunction = ModuleFunction(id=function_id,
pos=0,
name="SheetName",
parameters=[sheetNameParam],
)
param_id = -pipeline.tmp_id.getNewId(ModuleParam.vtType)
minRowParam = ModuleParam(id=param_id,
pos=0,
name="",
val=str(rowCount*vRCount),
type="Integer",
alias="",
)
function_id = -pipeline.tmp_id.getNewId(ModuleFunction.vtType)
minRowFunction = ModuleFunction(id=function_id,
pos=1,
name="MinRowCount",
parameters=[minRowParam],
)
param_id = -pipeline.tmp_id.getNewId(ModuleParam.vtType)
minColParam = ModuleParam(id=param_id,
pos=0,
name="",
val=str(colCount*vCCount),
type="Integer",
alias="",
)
function_id = -pipeline.tmp_id.getNewId(ModuleFunction.vtType)
minColFunction = ModuleFunction(id=function_id,
pos=2,
name="MinColumnCount",
parameters=[minColParam],
)
module_id = -pipeline.tmp_id.getNewId(module.Module.vtType)
sheetReference = module.Module(id=module_id,
name="SheetReference",
package="edu.utah.sci.vistrails.spreadsheet",
functions=[sheetNameFunction,
minRowFunction,
minColFunction])
action = db.services.action.create_action([('add',
sheetReference)])
# FIXME: this should go to dbservice
Action.convert(action)
pipeline.perform_action(action)
# sheetReference.id = pipeline.fresh_module_id()
# sheetReference.name = "SheetReference"
# addModule = AddModuleAction()
# addModule.module = sheetReference
# addModule.perform(pipeline)
#
# addParam = ChangeParameterAction()
# addParam.addParameter(sheetReference.id, 0, 0,
# "SheetName", "",
# '%s %d' % (sheetPrefix, sheet),
# "String", "" )
# addParam.addParameter(sheetReference.id, 1, 0,
# "MinRowCount", "",
# str(rowCount*vRCount), "Integer", "" )
# addParam.addParameter(sheetReference.id, 2, 0,
# "MinColumnCount", "",
# str(colCount*vCCount), "Integer", "" )
# addParam.perform(pipeline)
# Add a cell location module with a specific row and column
param_id = -pipeline.tmp_id.getNewId(ModuleParam.vtType)
rowParam = ModuleParam(id=param_id,
pos=0,
name="",
val=str(row*vRCount+vRow+1),
type="Integer",
alias="",
)
function_id = -pipeline.tmp_id.getNewId(ModuleFunction.vtType)
rowFunction = ModuleFunction(id=function_id,
pos=0,
name="Row",
parameters=[rowParam],
)
param_id = -pipeline.tmp_id.getNewId(ModuleParam.vtType)
colParam = ModuleParam(id=param_id,
pos=0,
name="",
val=str(col*vCCount+vCol+1),
type="Integer",
alias="",
)
function_id = -pipeline.tmp_id.getNewId(ModuleFunction.vtType)
colFunction = ModuleFunction(id=function_id,
pos=1,
name="Column",
parameters=[colParam],
)
module_id = -pipeline.tmp_id.getNewId(module.Module.vtType)
cellLocation = module.Module(id=module_id,
name="CellLocation",
package="edu.utah.sci.vistrails.spreadsheet",
functions=[rowFunction,
colFunction])
action = db.services.action.create_action([('add',
cellLocation)])
# FIXME: this should go to dbservice
Action.convert(action)
pipeline.perform_action(action)
# cellLocation.id = pipeline.fresh_module_id()
# cellLocation.name = "CellLocation"
# addModule = AddModuleAction()
# addModule.module = cellLocation
# addModule.perform(pipeline)
#
# addParam = ChangeParameterAction()
# addParam.addParameter(cellLocation.id, 0, 0,
# "Row", "", str(row*vRCount+vRow+1),
# "Integer", "" )
# addParam.addParameter(cellLocation.id, 1, 0,
# "Column", "", str(col*vCCount+vCol+1),
# "Integer", "" )
# addParam.perform(pipeline)
# Then connect the SheetReference to the CellLocation
port_id = -pipeline.tmp_id.getNewId(Port.vtType)
source = Port(id=port_id,
type='source',
moduleId=sheetReference.id,
moduleName=sheetReference.name)
source.name = "self"
source.spec = copy.copy(registry.get_output_port_spec(sheetReference,
"self"))
port_id = -pipeline.tmp_id.getNewId(Port.vtType)
destination = Port(id=port_id,
type='destination',
moduleId=cellLocation.id,
moduleName=cellLocation.name)
destination.name = "SheetReference"
destination.spec = copy.copy(registry.get_input_port_spec(cellLocation,
"SheetReference"))
c_id = -pipeline.tmp_id.getNewId(connection.Connection.vtType)
conn = connection.Connection(id=c_id,
ports=[source, destination])
action = db.services.action.create_action([('add',
conn)])
# FIXME: this should go to dbservice
Action.convert(action)
pipeline.perform_action(action)
# conn = connection.Connection()
# conn.id = pipeline.fresh_connection_id()
# conn.source.moduleId = sheetReference.id
# conn.source.moduleName = sheetReference.name
# conn.source.name = "self"
# conn.source.spec = registry.getOutputPortSpec(
# sheetReference, "self")
# conn.connectionId = conn.id
# conn.destination.moduleId = cellLocation.id
# conn.destination.moduleName = cellLocation.name
# conn.destination.name = "SheetReference"
# conn.destination.spec = registry.getInputPortSpec(
# cellLocation, "SheetReference")
# addConnection = AddConnectionAction()
# addConnection.connection = conn
# addConnection.perform(pipeline)
# Then connect the CellLocation to the spreadsheet cell
port_id = -pipeline.tmp_id.getNewId(Port.vtType)
source = Port(id=port_id,
type='source',
moduleId=cellLocation.id,
moduleName=cellLocation.name)
source.name = "self"
source.spec = registry.get_output_port_spec(cellLocation, "self")
port_id = -pipeline.tmp_id.getNewId(Port.vtType)
cell_module = pipeline.get_module_by_id(mId)
destination = Port(id=port_id,
type='destination',
moduleId=mId,
moduleName=pipeline.modules[mId].name)
destination.name = "Location"
destination.spec = registry.get_input_port_spec(cell_module,
"Location")
c_id = -pipeline.tmp_id.getNewId(connection.Connection.vtType)
conn = connection.Connection(id=c_id,
ports=[source, destination])
action = db.services.action.create_action([('add',
conn)])
# FIXME: this should go to dbservice
Action.convert(action)
pipeline.perform_action(action)
# conn = connection.Connection()
# conn.id = pipeline.fresh_connection_id()
# conn.source.moduleId = cellLocation.id
# conn.source.moduleName = cellLocation.name
# conn.source.name = "self"
# conn.source.spec = registry.getOutputPortSpec(
# cellLocation, "self")
# conn.connectionId = conn.id
# conn.destination.moduleId = mId
# conn.destination.moduleName = pipeline.modules[mId].name
# conn.destination.name = "Location"
# conn.destination.spec = registry.getInputPortSpec(
# cellLocation, "Location")
# addConnection = AddConnectionAction()
# addConnection.connection = conn
# addConnection.perform(pipeline)
modifiedPipelines.append(pipeline)
return modifiedPipelines
def create_action_from_ops(op_list):
from core.vistrail.action import Action
action = db.services.action.create_action_from_ops(op_list)
Action.convert(action)
return action
def getPathAsAction(vt, v1, v2, do_copy=False):
a = db.services.vistrail.getPathAsAction(vt, v1, v2, do_copy)
Action.convert(a)
return a
def getPathAsAction(vt, v1, v2):
a = db.services.vistrail.getPathAsAction(vt, v1, v2)
Action.convert(a)
return a
