def test_parse_table_fail(self):
# should fail with parse error
f = StringIO(table_io.example)
self.assertRaises(ValueError, clustal_io.read, f)
f.close()
def test_parse_table_fail(self):
# should fail with parse error
f = StringIO(table_io.example)
self.assertRaises(ValueError, clustal_io.read, f)
f.close()
def test_write(self):
f = StringIO(clustal_io.example)
seqs = clustal_io.read(f)
fout = StringIO()
clustal_io.write(fout, seqs)
fout.seek(0)
seqs2 = clustal_io.read(fout)
self.assertEqual(seqs, seqs2)
f.close()
def test_write(self):
f = StringIO(clustal_io.example)
seqs = clustal_io.read(f)
fout = StringIO()
clustal_io.write(fout, seqs)
fout.seek(0)
seqs2 = clustal_io.read(fout)
self.assertEqual(seqs, seqs2)
f.close()
def test_parse_clustal_example(self):
f = StringIO(clustal_io.example)
seqs = clustal_io.read(f)
f.close()
def test_parse_plain_fail(self):
# should fail with parse error
f = StringIO(plain_io.example)
self.assertRaises(ValueError,
msf_io.read, f)
f.close()
def test_parse_clustal_example(self):
f = StringIO(clustal_io.example)
seqs = clustal_io.read(f)
f.close()
def test_parse_plain_fail(self):
# should fail with parse error
f = StringIO(plain_io.example)
self.assertRaises(ValueError, msf_io.read, f)
f.close()
