def to_pandas(self, out_file_path, write_metadata=True, id_label="corems:"):
if isinstance(out_file_path, str):
out_file_path = Path(out_file_path)
# pickle dataframe (pkl extension)
exportMS = LowResGCMSExport(out_file_path, self)
exportMS.to_pandas(id_label=id_label, write_metadata=write_metadata)
return out_file_path.with_suffix('.pkl')
def to_excel(self, out_file_path, write_mode='ab', write_metadata=True, id_label="corems:"):
if isinstance(out_file_path, str):
out_file_path = Path(out_file_path)
exportMS = LowResGCMSExport(out_file_path, self)
exportMS.to_excel(id_label=id_label, write_mode=write_mode, write_metadata=write_metadata)
return out_file_path.with_suffix('.xlsx')
def to_csv(self, out_file_path, separate_output=False, write_metadata=True, id_label="corems:"):
if isinstance(out_file_path, str):
out_file_path = Path(out_file_path)
exportMS = LowResGCMSExport(out_file_path, self)
exportMS.to_csv(id_label=id_label, separate_output=separate_output, write_metadata=write_metadata)
return out_file_path.with_suffix('.csv')
def to_hdf(self, id_label="corems:"):
# returns pandas dataframe
exportMS = LowResGCMSExport(self.sample_name, self)
return exportMS.to_hdf(id_label=id_label)
def parameters_json(self, id_label="corems:", output_path=" "):
# returns json string
exportMS = LowResGCMSExport(self.sample_name, self)
return exportMS.get_parameters_json(self, id_label, output_path)
def processing_stats(self):
# returns json string
exportMS = LowResGCMSExport(self.sample_name, self)
return exportMS.get_data_stats(self)
def to_hdf(self, highest_score=True):
#returns pandas dataframe
exportMS = LowResGCMSExport(self.sample_name, self)
return exportMS.to_hdf(highest_score=highest_score)
def to_pandas(self, out_file_path, highest_score=True):
#pickle dataframe (pkl extension)
exportMS = LowResGCMSExport(out_file_path, self)
exportMS.to_pandas(highest_score=highest_score)
def to_csv(self, out_file_path, write_mode='ab', highest_score=True):
exportMS = LowResGCMSExport(out_file_path, self)
exportMS.to_csv(highest_score=highest_score)
def to_json(self,highest_score=True, id_label="corems:"):
#returns pandas dataframe
exportMS= LowResGCMSExport(self.sample_name, self)
return exportMS.get_json(highest_score=highest_score, id_label=id_label)
def to_csv(self, out_file_path, write_mode='ab', highest_score=True, id_label="corems:"):
exportMS= LowResGCMSExport(out_file_path, self)
exportMS.to_csv(highest_score=highest_score, id_label=id_label)