def test_lookup_value_check(self):
func = NumexprFunction('f',
'coeff_a * x', ['coeff_a', 'x'],
param_map={
'x': 'x',
'coeff_a': 'coeff_a'
})
func.lookup_values = ['abc123']
test_context = ParameterContext('test',
param_type=ParameterFunctionType(func))
tm = TypesManager(None, None, None)
self.assertTrue(tm.has_lookup_value(test_context))
self.assertEquals(tm.get_lookup_value_ids(test_context), ['abc123'])
def get_coverage_function(self, parameter_function):
func = None
if parameter_function.function_type == PFT.PYTHON:
func = PythonFunction(name=parameter_function.name,
owner=parameter_function.owner,
func_name=parameter_function.function,
arg_list=parameter_function.args,
kwarg_map=None,
param_map=None,
egg_uri=parameter_function.egg_uri)
elif parameter_function.function_type == PFT.NUMEXPR:
func = NumexprFunction(name=parameter_function.name,
expression=parameter_function.function,
arg_list=parameter_function.args)
if not isinstance(func, AbstractFunction):
raise Conflict("Incompatible parameter function loaded: %s" %
parameter_function._id)
return func
def _get_pdict(self, filter_values):
t_ctxt = ParameterContext(
'TIME', param_type=QuantityType(value_encoding=np.dtype('int64')))
t_ctxt.uom = 'seconds since 01-01-1900'
t_ctxt_id = self.dataset_management.create_parameter_context(
name='TIME',
parameter_context=t_ctxt.dump(),
parameter_type='quantity<int64>',
unit_of_measure=t_ctxt.uom)
lat_ctxt = ParameterContext(
'LAT',
param_type=ConstantType(
QuantityType(value_encoding=np.dtype('float32'))),
fill_value=-9999)
lat_ctxt.axis = AxisTypeEnum.LAT
lat_ctxt.uom = 'degree_north'
lat_ctxt_id = self.dataset_management.create_parameter_context(
name='LAT',
parameter_context=lat_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=lat_ctxt.uom)
lon_ctxt = ParameterContext(
'LON',
param_type=ConstantType(
QuantityType(value_encoding=np.dtype('float32'))),
fill_value=-9999)
lon_ctxt.axis = AxisTypeEnum.LON
lon_ctxt.uom = 'degree_east'
lon_ctxt_id = self.dataset_management.create_parameter_context(
name='LON',
parameter_context=lon_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=lon_ctxt.uom)
# Independent Parameters
# Temperature - values expected to be the decimal results of conversion from hex
temp_ctxt = ParameterContext(
'TEMPWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
temp_ctxt.uom = 'deg_C'
temp_ctxt_id = self.dataset_management.create_parameter_context(
name='TEMPWAT_L0',
parameter_context=temp_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=temp_ctxt.uom)
# Conductivity - values expected to be the decimal results of conversion from hex
cond_ctxt = ParameterContext(
'CONDWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
cond_ctxt.uom = 'S m-1'
cond_ctxt_id = self.dataset_management.create_parameter_context(
name='CONDWAT_L0',
parameter_context=cond_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=cond_ctxt.uom)
# Pressure - values expected to be the decimal results of conversion from hex
press_ctxt = ParameterContext(
'PRESWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
press_ctxt.uom = 'dbar'
press_ctxt_id = self.dataset_management.create_parameter_context(
name='PRESWAT_L0',
parameter_context=press_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=press_ctxt.uom)
# Dependent Parameters
# TEMPWAT_L1 = (TEMPWAT_L0 / 10000) - 10
tl1_func = '(T / 10000) - 10'
tl1_pmap = {'T': 'TEMPWAT_L0'}
expr = NumexprFunction('TEMPWAT_L1',
tl1_func, ['T'],
param_map=tl1_pmap)
tempL1_ctxt = ParameterContext(
'TEMPWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
tempL1_ctxt.uom = 'deg_C'
tempL1_ctxt_id = self.dataset_management.create_parameter_context(
name=tempL1_ctxt.name,
parameter_context=tempL1_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=tempL1_ctxt.uom)
# CONDWAT_L1 = (CONDWAT_L0 / 100000) - 0.5
cl1_func = '(C / 100000) - 0.5'
cl1_pmap = {'C': 'CONDWAT_L0'}
expr = NumexprFunction('CONDWAT_L1',
cl1_func, ['C'],
param_map=cl1_pmap)
condL1_ctxt = ParameterContext(
'CONDWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
condL1_ctxt.uom = 'S m-1'
condL1_ctxt_id = self.dataset_management.create_parameter_context(
name=condL1_ctxt.name,
parameter_context=condL1_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=condL1_ctxt.uom)
# Equation uses p_range, which is a calibration coefficient - Fixing to 679.34040721
# PRESWAT_L1 = (PRESWAT_L0 * p_range / (0.85 * 65536)) - (0.05 * p_range)
pl1_func = '(P * p_range / (0.85 * 65536)) - (0.05 * p_range)'
pl1_pmap = {'P': 'PRESWAT_L0', 'p_range': 679.34040721}
expr = NumexprFunction('PRESWAT_L1',
pl1_func, ['P', 'p_range'],
param_map=pl1_pmap)
presL1_ctxt = ParameterContext(
'PRESWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
presL1_ctxt.uom = 'S m-1'
presL1_ctxt_id = self.dataset_management.create_parameter_context(
name=presL1_ctxt.name,
parameter_context=presL1_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=presL1_ctxt.uom)
# Density & practical salinity calucluated using the Gibbs Seawater library - available via python-gsw project:
# https://code.google.com/p/python-gsw/ & http://pypi.python.org/pypi/gsw/3.0.1
# PRACSAL = gsw.SP_from_C((CONDWAT_L1 * 10), TEMPWAT_L1, PRESWAT_L1)
owner = 'gsw'
sal_func = 'SP_from_C'
sal_arglist = ['C', 't', 'p']
sal_pmap = {
'C':
NumexprFunction('CONDWAT_L1*10',
'C*10', ['C'],
param_map={'C': 'CONDWAT_L1'}),
't':
'TEMPWAT_L1',
'p':
'PRESWAT_L1'
}
sal_kwargmap = None
expr = PythonFunction('PRACSAL', owner, sal_func, sal_arglist,
sal_kwargmap, sal_pmap)
sal_ctxt = ParameterContext('PRACSAL',
param_type=ParameterFunctionType(expr),
variability=VariabilityEnum.TEMPORAL)
sal_ctxt.uom = 'g kg-1'
sal_ctxt_id = self.dataset_management.create_parameter_context(
name=sal_ctxt.name,
parameter_context=sal_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=sal_ctxt.uom)
# absolute_salinity = gsw.SA_from_SP(PRACSAL, PRESWAT_L1, longitude, latitude)
# conservative_temperature = gsw.CT_from_t(absolute_salinity, TEMPWAT_L1, PRESWAT_L1)
# DENSITY = gsw.rho(absolute_salinity, conservative_temperature, PRESWAT_L1)
owner = 'gsw'
abs_sal_expr = PythonFunction('abs_sal', owner, 'SA_from_SP',
['PRACSAL', 'PRESWAT_L1', 'LON', 'LAT'])
cons_temp_expr = PythonFunction(
'cons_temp', owner, 'CT_from_t',
[abs_sal_expr, 'TEMPWAT_L1', 'PRESWAT_L1'])
dens_expr = PythonFunction(
'DENSITY', owner, 'rho',
[abs_sal_expr, cons_temp_expr, 'PRESWAT_L1'])
dens_ctxt = ParameterContext(
'DENSITY',
param_type=ParameterFunctionType(dens_expr),
variability=VariabilityEnum.TEMPORAL)
dens_ctxt.uom = 'kg m-3'
dens_ctxt_id = self.dataset_management.create_parameter_context(
name=dens_ctxt.name,
parameter_context=dens_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=dens_ctxt.uom)
ids = [
t_ctxt_id, lat_ctxt_id, lon_ctxt_id, temp_ctxt_id, cond_ctxt_id,
press_ctxt_id, tempL1_ctxt_id, condL1_ctxt_id, presL1_ctxt_id,
sal_ctxt_id, dens_ctxt_id
]
contexts = [
t_ctxt, lat_ctxt, lon_ctxt, temp_ctxt, cond_ctxt, press_ctxt,
tempL1_ctxt, condL1_ctxt, presL1_ctxt, sal_ctxt, dens_ctxt
]
context_ids = [
ids[i] for i, ctxt in enumerate(contexts)
if ctxt.name in filter_values
]
pdict_name = '_'.join(
[ctxt.name for ctxt in contexts if ctxt.name in filter_values])
try:
self.pdicts[pdict_name]
return self.pdicts[pdict_name]
except KeyError:
pdict_id = self.dataset_management.create_parameter_dictionary(
pdict_name,
parameter_context_ids=context_ids,
temporal_context='time')
self.pdicts[pdict_name] = pdict_id
return pdict_id
def create_pfuncs(self):
contexts = {}
funcs = {}
t_ctxt = ParameterContext(
'TIME', param_type=QuantityType(value_encoding=np.dtype('int64')))
t_ctxt.uom = 'seconds since 01-01-1900'
t_ctxt_id = self.dataset_management.create_parameter_context(
name='test_TIME', parameter_context=t_ctxt.dump())
contexts['TIME'] = (t_ctxt, t_ctxt_id)
lat_ctxt = ParameterContext(
'LAT',
param_type=ConstantType(
QuantityType(value_encoding=np.dtype('float32'))),
fill_value=-9999)
lat_ctxt.axis = AxisTypeEnum.LAT
lat_ctxt.uom = 'degree_north'
lat_ctxt_id = self.dataset_management.create_parameter_context(
name='test_LAT', parameter_context=lat_ctxt.dump())
contexts['LAT'] = lat_ctxt, lat_ctxt_id
lon_ctxt = ParameterContext(
'LON',
param_type=ConstantType(
QuantityType(value_encoding=np.dtype('float32'))),
fill_value=-9999)
lon_ctxt.axis = AxisTypeEnum.LON
lon_ctxt.uom = 'degree_east'
lon_ctxt_id = self.dataset_management.create_parameter_context(
name='test_LON', parameter_context=lon_ctxt.dump())
contexts['LON'] = lon_ctxt, lon_ctxt_id
# Independent Parameters
# Temperature - values expected to be the decimal results of conversion from hex
temp_ctxt = ParameterContext(
'TEMPWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
temp_ctxt.uom = 'deg_C'
temp_ctxt_id = self.dataset_management.create_parameter_context(
name='test_TEMPWAT_L0', parameter_context=temp_ctxt.dump())
contexts['TEMPWAT_L0'] = temp_ctxt, temp_ctxt_id
# Conductivity - values expected to be the decimal results of conversion from hex
cond_ctxt = ParameterContext(
'CONDWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
cond_ctxt.uom = 'S m-1'
cond_ctxt_id = self.dataset_management.create_parameter_context(
name='test_CONDWAT_L0', parameter_context=cond_ctxt.dump())
contexts['CONDWAT_L0'] = cond_ctxt, cond_ctxt_id
# Pressure - values expected to be the decimal results of conversion from hex
press_ctxt = ParameterContext(
'PRESWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
press_ctxt.uom = 'dbar'
press_ctxt_id = self.dataset_management.create_parameter_context(
name='test_PRESWAT_L0', parameter_context=press_ctxt.dump())
contexts['PRESWAT_L0'] = press_ctxt, press_ctxt_id
# Dependent Parameters
# TEMPWAT_L1 = (TEMPWAT_L0 / 10000) - 10
tl1_func = '(T / 10000) - 10'
expr = NumexprFunction('TEMPWAT_L1', tl1_func, ['T'])
expr_id = self.dataset_management.create_parameter_function(
name='test_TEMPWAT_L1', parameter_function=expr.dump())
funcs['TEMPWAT_L1'] = expr, expr_id
tl1_pmap = {'T': 'TEMPWAT_L0'}
expr.param_map = tl1_pmap
tempL1_ctxt = ParameterContext(
'TEMPWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
tempL1_ctxt.uom = 'deg_C'
tempL1_ctxt_id = self.dataset_management.create_parameter_context(
name='test_TEMPWAT_L1',
parameter_context=tempL1_ctxt.dump(),
parameter_function_id=expr_id)
contexts['TEMPWAT_L1'] = tempL1_ctxt, tempL1_ctxt_id
# CONDWAT_L1 = (CONDWAT_L0 / 100000) - 0.5
cl1_func = '(C / 100000) - 0.5'
expr = NumexprFunction('CONDWAT_L1', cl1_func, ['C'])
expr_id = self.dataset_management.create_parameter_function(
name='test_CONDWAT_L1', parameter_function=expr.dump())
funcs['CONDWAT_L1'] = expr, expr_id
cl1_pmap = {'C': 'CONDWAT_L0'}
expr.param_map = cl1_pmap
condL1_ctxt = ParameterContext(
'CONDWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
condL1_ctxt.uom = 'S m-1'
condL1_ctxt_id = self.dataset_management.create_parameter_context(
name='test_CONDWAT_L1',
parameter_context=condL1_ctxt.dump(),
parameter_function_id=expr_id)
contexts['CONDWAT_L1'] = condL1_ctxt, condL1_ctxt_id
# Equation uses p_range, which is a calibration coefficient - Fixing to 679.34040721
# PRESWAT_L1 = (PRESWAT_L0 * p_range / (0.85 * 65536)) - (0.05 * p_range)
pl1_func = '(P * p_range / (0.85 * 65536)) - (0.05 * p_range)'
expr = NumexprFunction('PRESWAT_L1', pl1_func, ['P', 'p_range'])
expr_id = self.dataset_management.create_parameter_function(
name='test_PRESWAT_L1', parameter_function=expr.dump())
funcs['PRESWAT_L1'] = expr, expr_id
pl1_pmap = {'P': 'PRESWAT_L0', 'p_range': 679.34040721}
expr.param_map = pl1_pmap
presL1_ctxt = ParameterContext(
'PRESWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
presL1_ctxt.uom = 'S m-1'
presL1_ctxt_id = self.dataset_management.create_parameter_context(
name='test_CONDWAT_L1',
parameter_context=presL1_ctxt.dump(),
parameter_function_id=expr_id)
contexts['PRESWAT_L1'] = presL1_ctxt, presL1_ctxt_id
# Density & practical salinity calucluated using the Gibbs Seawater library - available via python-gsw project:
# https://code.google.com/p/python-gsw/ & http://pypi.python.org/pypi/gsw/3.0.1
# PRACSAL = gsw.SP_from_C((CONDWAT_L1 * 10), TEMPWAT_L1, PRESWAT_L1)
owner = 'gsw'
sal_func = 'SP_from_C'
sal_arglist = ['C', 't', 'p']
expr = PythonFunction('PRACSAL', owner, sal_func, sal_arglist)
expr_id = self.dataset_management.create_parameter_function(
name='test_PRACSAL', parameter_function=expr.dump())
funcs['PRACSAL'] = expr, expr_id
# A magic function that may or may not exist actually forms the line below at runtime.
sal_pmap = {
'C':
NumexprFunction('CONDWAT_L1*10',
'C*10', ['C'],
param_map={'C': 'CONDWAT_L1'}),
't':
'TEMPWAT_L1',
'p':
'PRESWAT_L1'
}
expr.param_map = sal_pmap
sal_ctxt = ParameterContext('PRACSAL',
param_type=ParameterFunctionType(expr),
variability=VariabilityEnum.TEMPORAL)
sal_ctxt.uom = 'g kg-1'
sal_ctxt_id = self.dataset_management.create_parameter_context(
name='test_PRACSAL',
parameter_context=sal_ctxt.dump(),
parameter_function_id=expr_id)
contexts['PRACSAL'] = sal_ctxt, sal_ctxt_id
# absolute_salinity = gsw.SA_from_SP(PRACSAL, PRESWAT_L1, longitude, latitude)
# conservative_temperature = gsw.CT_from_t(absolute_salinity, TEMPWAT_L1, PRESWAT_L1)
# DENSITY = gsw.rho(absolute_salinity, conservative_temperature, PRESWAT_L1)
owner = 'gsw'
abs_sal_expr = PythonFunction('abs_sal', owner, 'SA_from_SP',
['PRACSAL', 'PRESWAT_L1', 'LON', 'LAT'])
cons_temp_expr = PythonFunction(
'cons_temp', owner, 'CT_from_t',
[abs_sal_expr, 'TEMPWAT_L1', 'PRESWAT_L1'])
dens_expr = PythonFunction(
'DENSITY', owner, 'rho',
[abs_sal_expr, cons_temp_expr, 'PRESWAT_L1'])
dens_ctxt = ParameterContext(
'DENSITY',
param_type=ParameterFunctionType(dens_expr),
variability=VariabilityEnum.TEMPORAL)
dens_ctxt.uom = 'kg m-3'
dens_ctxt_id = self.dataset_management.create_parameter_context(
name='test_DENSITY', parameter_context=dens_ctxt.dump())
contexts['DENSITY'] = dens_ctxt, dens_ctxt_id
return contexts, funcs
