def run(self):
# Run `HPC.TANmask` to generate scripts to be executed
script = run_command(f"HPC.TANmask -T{self.n_core} "
f"{self.db_prefix}.{self.db_suffix}")
if db_to_n_blocks(f"{self.db_prefix}.{self.db_suffix}") > 1:
script += '\n'.join([
f"Catrack -v {self.db_prefix}.{self.db_suffix} tan",
f"rm .{self.db_prefix}.*.tan.*"
])
# Run the script
script_fname = join(self.tmp_dname, "run_datander.sh")
log_fname = join(self.tmp_dname, "log")
if self.scheduler is None:
with open(script_fname, 'w') as f:
f.write(f"{script}\n")
run_command(f"bash {script_fname} > {log_fname} 2>&1")
else:
self.scheduler.submit(script,
script_fname,
job_name="datander",
log_fname=log_fname,
n_core=self.n_core,
wait=True)
def __post_init__(self):
random.seed(self.rand_seed)
run_command(f"mkdir -p {self.tmp_dname}; rm -f {self.tmp_dname}/*")
def __post_init__(self):
run_command(f"mkdir -p {self.tmp_dname}; rm -f {self.tmp_dname}/*")
def __post_init__(self):
run_command(f"rm -f .{self.db_prefix}.*.tan.* "
f".{self.db_prefix}.tan.* TAN.{self.db_prefix}.*")
run_command(f"mkdir -p {self.tmp_dname}; rm -f {self.tmp_dname}/*")