def test_Part1DICOM(self):
""" Test the DICOM part of the test using the head atlas
"""
import os
self.delayDisplay("Starting the DICOM test")
#
# first, get the data - a zip file of dicom data
#
import SampleData
dicomFilesDirectory = SampleData.downloadFromURL(
fileNames='Dcmtk-db.zip',
uris=TESTING_DATA_URL + 'MD5/7a43d121a51a631ab0df02071e5ba6ed',
checksums='MD5:7a43d121a51a631ab0df02071e5ba6ed')[0]
try:
self.delayDisplay("Switching to temp database directory")
originalDatabaseDirectory = DICOMUtils.openTemporaryDatabase(
'tempDICOMDatbase')
self.delayDisplay('Start Local DICOM Q/R SCP')
import subprocess
import os
configFilePath = dicomFilesDirectory + '/Dcmtk-db/dcmqrscp.cfg'
processCurrentPath = dicomFilesDirectory + '/Dcmtk-db/'
print("configFilePath: " + os.path.abspath(configFilePath))
print("processCurrentPath: " + os.path.abspath(processCurrentPath))
dcmqrscpExeOptions = ('/bin',
'/../CTK-build/CMakeExternals/Install/bin',
'/../DCMTK-install/bin',
'/../DCMTK-build/bin',
'/../DCMTK-build/bin/Release',
'/../DCMTK-build/bin/Debug',
'/../DCMTK-build/bin/RelWithDebInfo'
'/../DCMTK-build/bin/MinSizeRel')
dcmqrscpExePath = None
dcmqrscpExeName = '/dcmqrscp'
if slicer.app.os == 'win':
dcmqrscpExeName = dcmqrscpExeName + '.exe'
for path in dcmqrscpExeOptions:
testPath = slicer.app.slicerHome + path + dcmqrscpExeName
if os.path.exists(testPath):
dcmqrscpExePath = testPath
break
if not dcmqrscpExePath:
raise UserWarning("Could not find dcmqrscp executable")
args = (dcmqrscpExePath, '-c', configFilePath)
popen = subprocess.Popen(args,
stdout=subprocess.PIPE,
cwd=processCurrentPath)
self.delayDisplay('Retrieve DICOM')
slicer.util.selectModule('DICOM')
dicomRetrieve = ctk.ctkDICOMRetrieve()
dicomRetrieve.setKeepAssociationOpen(True)
dicomRetrieve.setDatabase(slicer.dicomDatabase)
dicomRetrieve.setCallingAETitle('SlicerAE')
dicomRetrieve.setCalledAETitle('DCMTK')
dicomRetrieve.setPort(12345)
dicomRetrieve.setHost('localhost')
dicomRetrieve.getStudy(
'1.2.124.113932.1.170.223.162.178.20050502.160340.12640015')
popen.kill()
# Select first patient
browserWidget = slicer.modules.DICOMWidget.browserWidget
browserWidget.dicomBrowser.dicomTableManager().patientsTable(
).selectFirst()
browserWidget.examineForLoading()
self.delayDisplay('Loading Selection')
browserWidget.loadCheckedLoadables()
self.delayDisplay('Change Level')
layoutManager = slicer.app.layoutManager()
redWidget = layoutManager.sliceWidget('Red')
slicer.util.clickAndDrag(redWidget, start=(10, 10), end=(10, 40))
self.delayDisplay('Change Window')
slicer.util.clickAndDrag(redWidget, start=(10, 10), end=(40, 10))
self.delayDisplay('Change Layout')
layoutManager = slicer.app.layoutManager()
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutOneUpRedSliceView)
self.delayDisplay('Zoom')
slicer.util.clickAndDrag(redWidget,
button='Right',
start=(10, 10),
end=(10, 40))
self.delayDisplay('Pan')
slicer.util.clickAndDrag(redWidget,
button='Middle',
start=(10, 10),
end=(40, 40))
self.delayDisplay('Center')
redWidget.sliceController().fitSliceToBackground()
self.delayDisplay('Lightbox')
redWidget.sliceController().setLightboxTo6x6()
self.delayDisplay('Conventional Layout')
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutConventionalView)
self.delayDisplay('No Lightbox')
redWidget.sliceController().setLightboxTo1x1()
self.delayDisplay('Four Up Layout')
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutFourUpView)
self.delayDisplay('Shift Mouse')
slicer.util.clickAndDrag(redWidget,
button='None',
start=(100, 100),
end=(140, 140),
modifiers=['Shift'])
self.delayDisplay('Conventional, Link, Slice Model')
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutConventionalView)
redWidget.sliceController().setSliceLink(True)
redWidget.sliceController().setSliceVisible(True)
self.delayDisplay('Rotate')
threeDView = layoutManager.threeDWidget(0).threeDView()
slicer.util.clickAndDrag(threeDView)
self.delayDisplay('Zoom')
threeDView = layoutManager.threeDWidget(0).threeDView()
slicer.util.clickAndDrag(threeDView, button='Right')
self.delayDisplay('Test passed!')
except Exception as e:
import traceback
traceback.print_exc()
self.delayDisplay('Test caused exception!\n' + str(e))
self.delayDisplay("Restoring original database directory")
DICOMUtils.closeTemporaryDatabase(originalDatabaseDirectory)
def test_Part1DICOM(self):
""" Test the DICOM part of the test using the head atlas
"""
import os
self.delayDisplay("Starting the DICOM test")
#
# first, get the data - a zip file of dicom data
#
import urllib
downloads = (('http://slicer.kitware.com/midas3/download?items=18822',
'Dcmtk-db.zip'), )
self.delayDisplay("Downloading")
for url, name in downloads:
filePath = slicer.app.temporaryPath + '/' + name
if not os.path.exists(filePath) or os.stat(filePath).st_size == 0:
self.delayDisplay('Requesting download %s from %s...\n' %
(name, url))
urllib.urlretrieve(url, filePath)
self.delayDisplay('Finished with download\n')
self.delayDisplay("Unzipping")
dicomFilesDirectory = slicer.app.temporaryPath + '/dicomFiles'
qt.QDir().mkpath(dicomFilesDirectory)
slicer.app.applicationLogic().Unzip(filePath, dicomFilesDirectory)
try:
self.delayDisplay("Switching to temp database directory")
originalDatabaseDirectory = DICOMUtils.openTemporaryDatabase(
'tempDICOMDatbase')
self.delayDisplay('Start Local DICOM Q/R SCP')
import subprocess
import os
configFilePath = dicomFilesDirectory + '/Dcmtk-db/dcmqrscp.cfg'
processCurrentPath = dicomFilesDirectory + '/Dcmtk-db/'
dcmqrscpExeOptions = (
'/bin',
'/../CTK-build/CMakeExternals/Install/bin',
'/../DCMTK-install/bin',
'/../DCMTK-build/bin',
)
dcmqrscpExePath = None
dcmqrscpExeName = '/dcmqrscp'
if slicer.app.os == 'win':
dcmqrscpExeName = dcmqrscpExeName + '.exe'
for path in dcmqrscpExeOptions:
testPath = slicer.app.slicerHome + path + dcmqrscpExeName
if os.path.exists(testPath):
dcmqrscpExePath = testPath
break
if not dcmqrscpExePath:
raise (UserWarning("Could not find dcmqrscp executable"))
args = (dcmqrscpExePath, '-c', configFilePath)
popen = subprocess.Popen(args,
stdout=subprocess.PIPE,
cwd=processCurrentPath)
self.delayDisplay('Retrieve DICOM')
mainWindow = slicer.util.mainWindow()
mainWindow.moduleSelector().selectModule('DICOM')
dicomRetrieve = ctk.ctkDICOMRetrieve()
dicomRetrieve.setKeepAssociationOpen(True)
dicomRetrieve.setDatabase(slicer.dicomDatabase)
dicomRetrieve.setCallingAETitle('SlicerAE')
dicomRetrieve.setCalledAETitle('DCMTK')
dicomRetrieve.setPort(12345)
dicomRetrieve.setHost('localhost')
dicomRetrieve.getStudy(
'1.2.124.113932.1.170.223.162.178.20050502.160340.12640015')
popen.kill()
dicomWidget.detailsPopup.open()
# click on the first row of the tree
index = dicomWidget.tree.indexAt(qt.QPoint(0, 0))
dicomWidget.onTreeClicked(index)
self.delayDisplay('Loading Selection')
dicomWidget.detailsPopup.loadCheckedLoadables()
self.delayDisplay('Change Level')
layoutManager = slicer.app.layoutManager()
redWidget = layoutManager.sliceWidget('Red')
self.clickAndDrag(redWidget, start=(10, 10), end=(10, 40))
self.delayDisplay('Change Window')
self.clickAndDrag(redWidget, start=(10, 10), end=(40, 10))
self.delayDisplay('Change Layout')
layoutManager = slicer.app.layoutManager()
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutOneUpRedSliceView)
self.delayDisplay('Zoom')
self.clickAndDrag(redWidget,
button='Right',
start=(10, 10),
end=(10, 40))
self.delayDisplay('Pan')
self.clickAndDrag(redWidget,
button='Middle',
start=(10, 10),
end=(40, 40))
self.delayDisplay('Center')
redWidget.sliceController().fitSliceToBackground()
self.delayDisplay('Lightbox')
redWidget.sliceController().setLightboxTo6x6()
self.delayDisplay('Conventional Layout')
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutConventionalView)
self.delayDisplay('No Lightbox')
redWidget.sliceController().setLightboxTo1x1()
self.delayDisplay('Four Up Layout')
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutFourUpView)
self.delayDisplay('Shift Mouse')
self.clickAndDrag(redWidget,
button='None',
start=(100, 100),
end=(140, 140),
modifiers=['Shift'])
self.delayDisplay('Conventional, Link, Slice Model')
layoutManager.setLayout(
slicer.vtkMRMLLayoutNode.SlicerLayoutConventionalView)
redWidget.sliceController().setSliceLink(True)
redWidget.sliceController().setSliceVisible(True)
self.delayDisplay('Rotate')
threeDView = layoutManager.threeDWidget(0).threeDView()
self.clickAndDrag(threeDView)
self.delayDisplay('Zoom')
threeDView = layoutManager.threeDWidget(0).threeDView()
self.clickAndDrag(threeDView, button='Right')
self.delayDisplay('Test passed!')
except Exception, e:
import traceback
traceback.print_exc()
self.delayDisplay('Test caused exception!\n' + str(e))
def test_Part1DICOM(self):
""" Test the DICOM part of the test using the head atlas
"""
import os
self.delayDisplay("Starting the DICOM test")
#
# first, get the data - a zip file of dicom data
#
import SampleData
SampleData.downloadFromURL(
fileNames='Dcmtk-db.zip',
uris='http://slicer.kitware.com/midas3/download?items=18822')[0]
try:
self.delayDisplay("Switching to temp database directory")
originalDatabaseDirectory = DICOMUtils.openTemporaryDatabase('tempDICOMDatbase')
self.delayDisplay('Start Local DICOM Q/R SCP')
import subprocess
import os
configFilePath = dicomFilesDirectory + '/Dcmtk-db/dcmqrscp.cfg'
processCurrentPath = dicomFilesDirectory + '/Dcmtk-db/'
dcmqrscpExeOptions = (
'/bin',
'/../CTK-build/CMakeExternals/Install/bin',
'/../DCMTK-install/bin',
'/../DCMTK-build/bin',
)
dcmqrscpExePath = None
dcmqrscpExeName = '/dcmqrscp'
if slicer.app.os == 'win':
dcmqrscpExeName = dcmqrscpExeName + '.exe'
for path in dcmqrscpExeOptions:
testPath = slicer.app.slicerHome + path + dcmqrscpExeName
if os.path.exists(testPath):
dcmqrscpExePath = testPath
break
if not dcmqrscpExePath:
raise( UserWarning("Could not find dcmqrscp executable") )
args = (dcmqrscpExePath, '-c', configFilePath)
popen = subprocess.Popen(args, stdout=subprocess.PIPE, cwd=processCurrentPath)
self.delayDisplay('Retrieve DICOM')
mainWindow = slicer.util.mainWindow()
mainWindow.moduleSelector().selectModule('DICOM')
dicomRetrieve = ctk.ctkDICOMRetrieve()
dicomRetrieve.setKeepAssociationOpen(True)
dicomRetrieve.setDatabase(slicer.dicomDatabase)
dicomRetrieve.setCallingAETitle('SlicerAE')
dicomRetrieve.setCalledAETitle('DCMTK')
dicomRetrieve.setPort(12345)
dicomRetrieve.setHost('localhost')
dicomRetrieve.getStudy('1.2.124.113932.1.170.223.162.178.20050502.160340.12640015');
popen.kill()
dicomWidget.detailsPopup.open()
# click on the first row of the tree
index = dicomWidget.tree.indexAt(qt.QPoint(0,0))
dicomWidget.onTreeClicked(index)
self.delayDisplay('Loading Selection')
dicomWidget.detailsPopup.loadCheckedLoadables()
self.delayDisplay('Change Level')
layoutManager = slicer.app.layoutManager()
redWidget = layoutManager.sliceWidget('Red')
slicer.util.clickAndDrag(redWidget,start=(10,10),end=(10,40))
self.delayDisplay('Change Window')
slicer.util.clickAndDrag(redWidget,start=(10,10),end=(40,10))
self.delayDisplay('Change Layout')
layoutManager = slicer.app.layoutManager()
layoutManager.setLayout(slicer.vtkMRMLLayoutNode.SlicerLayoutOneUpRedSliceView)
self.delayDisplay('Zoom')
slicer.util.clickAndDrag(redWidget,button='Right',start=(10,10),end=(10,40))
self.delayDisplay('Pan')
slicer.util.clickAndDrag(redWidget,button='Middle',start=(10,10),end=(40,40))
self.delayDisplay('Center')
redWidget.sliceController().fitSliceToBackground()
self.delayDisplay('Lightbox')
redWidget.sliceController().setLightboxTo6x6()
self.delayDisplay('Conventional Layout')
layoutManager.setLayout(slicer.vtkMRMLLayoutNode.SlicerLayoutConventionalView)
self.delayDisplay('No Lightbox')
redWidget.sliceController().setLightboxTo1x1()
self.delayDisplay('Four Up Layout')
layoutManager.setLayout(slicer.vtkMRMLLayoutNode.SlicerLayoutFourUpView)
self.delayDisplay('Shift Mouse')
slicer.util.clickAndDrag(redWidget,button='None',start=(100,100),end=(140,140),modifiers=['Shift'])
self.delayDisplay('Conventional, Link, Slice Model')
layoutManager.setLayout(slicer.vtkMRMLLayoutNode.SlicerLayoutConventionalView)
redWidget.sliceController().setSliceLink(True)
redWidget.sliceController().setSliceVisible(True);
self.delayDisplay('Rotate')
threeDView = layoutManager.threeDWidget(0).threeDView()
slicer.util.clickAndDrag(threeDView)
self.delayDisplay('Zoom')
threeDView = layoutManager.threeDWidget(0).threeDView()
slicer.util.clickAndDrag(threeDView,button='Right')
self.delayDisplay('Test passed!')
except Exception, e:
import traceback
traceback.print_exc()
self.delayDisplay('Test caused exception!\n' + str(e))
