def select_groups(labels, groups_order_subset='all'):
adata_obs_key = labels
groups_order = labels.cat.categories
groups_masks = cp.zeros(
(len(labels.cat.categories), len(labels.cat.codes)), dtype=bool)
for iname, name in enumerate(labels.cat.categories.to_pandas()):
# if the name is not found, fallback to index retrieval
if labels.cat.categories[iname] in labels.cat.codes:
mask = labels.cat.categories[iname] == labels.cat.codes
else:
mask = iname == labels.cat.codes
groups_masks[iname] = mask.values
groups_ids = list(range(len(groups_order)))
if groups_order_subset != 'all':
groups_ids = []
for name in groups_order_subset:
groups_ids.append(
cp.where(
cp.array(labels.cat.categories.to_array().astype("int32"))
== int(name))[0][0])
if len(groups_ids) == 0:
# fallback to index retrieval
groups_ids = cp.where(
cp.in1d(
cp.arange(len(labels.cat.categories)).astype(str),
cp.array(groups_order_subset),
))[0]
groups_ids = [groups_id.item() for groups_id in groups_ids]
groups_masks = groups_masks[groups_ids]
groups_order_subset = labels.cat.categories[groups_ids].to_array(
).astype(int)
else:
groups_order_subset = groups_order.to_array()
return groups_order_subset, groups_masks
def ECP(error_weight, orig_weight, set_map):
orig_shape = error_weight.shape
error_weight, orig_weight = cp.ravel(error_weight.view(
cp.uint32)), cp.ravel(orig_weight.view(cp.uint32))
shape = (int(error_weight.__len__() / 16), 16)
# Reshape 64 bit in one row
error_weight, orig_weight = cp.reshape(error_weight, shape), cp.reshape(
orig_weight, shape)
# Calculate stuck bits
stuck_bits = cp.bitwise_xor(error_weight, orig_weight)
stuck_bits_sum = cp.sum(stuck_bits, axis=1)
error = cp.concatenate(cp.in1d(stuck_bits_sum, set_map).nonzero())
if error.__len__() == 0:
return cp.reshape(error_weight, orig_shape).view(cp.float32)
else:
error_weight[error, :] = orig_weight[error, :]
return cp.reshape(error_weight, orig_shape).view(cp.float32)
def auc(vector_predict, vector_true, gpu=False):
if gpu:
vector_predict = cp.array(vector_predict)
vector_true = cp.array(vector_true)
pos_indexes = cp.where(vector_true == 1)[0]
sort_indexes = cp.argsort(vector_predict)
rank = cp.nonzero(cp.in1d(sort_indexes, pos_indexes))[0]
return (cp.sum(rank) - len(pos_indexes) *
(len(pos_indexes) + 1) / 2) / (
len(pos_indexes) *
(len(vector_predict) - len(pos_indexes)))
else:
pos_indexes = np.where(vector_true == 1)[0]
sort_indexes = np.argsort(vector_predict)
rank = np.nonzero(np.in1d(sort_indexes, pos_indexes))[0]
return (np.sum(rank) - len(pos_indexes) *
(len(pos_indexes) + 1) / 2) / (
len(pos_indexes) *
(len(vector_predict) - len(pos_indexes)))
def _insert_zeros(ary, zero_indices):
"""
Create a new array of len(ary + zero_indices) where zero_indices
indicates indexes of 0s in the new array. Ary is used to fill the rest.
Examples
--------
_insert_zeros([1, 2, 3], [1, 3]) => [1, 0, 2, 0, 3]
"""
if len(zero_indices) == 0:
return ary.values
new_ary = cp.zeros((len(ary) + len(zero_indices)), dtype=cp.int32)
# getting mask of non-zeros
data_mask = ~cp.in1d(cp.arange(0, len(new_ary), dtype=cp.int32),
zero_indices)
new_ary[data_mask] = ary
return new_ary