def setUp(self):
ImportedDataTest.setUp(self)
plugin = ChannelStatisticPlugin()
self.op = op = plugin.get_operation()
op.name = "MeanByDox"
op.channel = "Y2-A"
op.statistic_name = "Geom.Mean"
op.by = ['Dox']
op.subset_list.append(CategorySubset(name="Well", values=["A", "B"]))
self.wi = wi = WorkflowItem(operation=op)
self.workflow.workflow.append(wi)
self.workflow.selected = wi
self.assertTrue(wait_for(wi, 'status', lambda v: v == 'valid', 10))
def testChangeParams(self):
self.op.h = 3
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 30))
self.assertTrue(
self.workflow.remote_eval("self.workflow[-1].result is None"))
self.op.do_estimate = True
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'valid', 120))
self.op.h0 = 2
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 30))
self.assertTrue(
self.workflow.remote_eval("self.workflow[-1].result is None"))
self.op.do_estimate = True
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'valid', 120))
self.op.tol = 0.3
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 30))
self.assertTrue(
self.workflow.remote_eval("self.workflow[-1].result is None"))
self.op.do_estimate = True
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'valid', 120))
self.op.merge_dist = 3
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 30))
self.assertTrue(
self.workflow.remote_eval("self.workflow[-1].result is None"))
self.op.do_estimate = True
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'valid', 120))
def setUp(self):
ImportedDataTest.setUp(self)
self.wi = wi = self.workflow.workflow[0]
self.wi.operation.events = 500
plugin = RadvizPlugin()
self.view = view = plugin.get_view()
view.channels_list = [
_Channel(channel="B1-A", scale="log"),
_Channel(channel="V2-A", scale="log"),
_Channel(channel="Y2-A", scale="log")
]
wi.views.append(view)
wi.current_view = view
self.workflow.selected = self.wi
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def setUp(self):
ImportedDataTest.setUp(self)
plugin = BinningPlugin()
self.op = op = plugin.get_operation()
op.name = "Bin"
op.channel = "V2-A"
op.scale = "log"
op.bin_width = 0.2
self.wi = wi = WorkflowItem(operation=op)
wi.default_view = op.default_view()
wi.view_error = "Not yet plotted"
wi.views.append(self.wi.default_view)
self.workflow.workflow.append(wi)
self.workflow.selected = wi
self.assertTrue(wait_for(wi, 'status', lambda v: v == 'valid', 10))
def testChangeThreshold(self):
self.op.xlow = 0
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v != 'valid', 130))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.xhigh = 200
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v != 'valid', 130))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.ylow = 900
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v != 'valid', 130))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.yhigh = 11000
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v != 'valid', 130))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
def setUp(self):
TasbeTest.setUp(self)
plugin = BeadCalibrationPlugin()
self.op = op = plugin.get_operation()
self.cwd = os.path.dirname(os.path.abspath(__file__))
op.beads_name = "Spherotech RCP-30-5A Lot AG01, AF02, AD04 and AAE01"
op.beads_file = self.cwd + "/../../cytoflow/tests/data/tasbe/beads.fcs"
op.units_list = [_Unit(channel = "FITC-A", unit = "MEFL"),
_Unit(channel = "Pacific Blue-A", unit = "MEBFP")]
self.wi = wi = WorkflowItem(operation = op)
wi.default_view = self.op.default_view()
wi.view_error = "Not yet plotted"
wi.views.append(self.wi.default_view)
self.workflow.workflow.append(wi)
self.workflow.selected = self.wi
# run the estimate
op.do_estimate = True
self.assertTrue(wait_for(wi, 'status', lambda v: v == 'valid', 30))
def setUp(self):
ImportedDataTest.setUp(self)
plugin = GaussianMixture1DPlugin()
self.op = op = plugin.get_operation()
op.name = "Gauss"
op.channel = "V2-A"
op.channel_scale = "logicle"
op.num_components = 2
op.subset_list.append(CategorySubset(name="Well", values=["A", "B"]))
self.wi = wi = WorkflowItem(operation=op)
wi.default_view = op.default_view()
wi.view_error = "Not yet plotted"
wi.views.append(self.wi.default_view)
self.workflow.workflow.append(wi)
self.workflow.selected = wi
# run estimate
op.do_estimate = True
self.assertTrue(wait_for(wi, 'status', lambda v: v == 'valid', 30))
def testYfacet(self):
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.yfacet = "Well"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
def testPlotArgs(self):
self.op.by = ["Dox", "Well"]
self.assertTrue(wait_for(self.wi, 'status', lambda v: v != 'valid',
30))
self.assertTrue(
self.workflow.remote_eval("self.workflow[-1].result is None"))
self.op.do_estimate = True
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.view = self.wi.current_view = self.wi.default_view
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# Common params
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.view.yfacet = "Well"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.title = "Title"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.xlabel = "X label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.ylabel = "Y label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharex = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharey = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.despine = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = ""
self.view.huefacet = "Dox"
self.view.plot_params.huelabel = "Hue label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.legend = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
## Scatterplot-specific params
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.min_quantile = 0.01
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.max_quantile = 0.90
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.alpha = 0.5
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.s = 5
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for m in SCATTERPLOT_MARKERS:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.marker = m
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testAllFunctions(self):
self.op.statistic_name = "Mean"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.statistic_name = "Count"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.statistic_name = "Std.Dev"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.statistic_name = "Geom.SD"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.statistic_name = "SEM"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.statistic_name = "Geom.SEM"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.statistic_name = "Mean 95% CI"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
self.op.statistic_name = "Geom.Mean 95% CI"
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
def testPlotArgs(self):
# BasePlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.title = "Title"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.xlabel = "X label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.ylabel = "Y label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = ""
self.view.huefacet = "Dox"
self.view.plot_params.huelabel = "Hue label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.view.yfacet = ""
self.view.huefacet = ""
self.view.plot_params.col_wrap = 2
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for style in ['darkgrid', 'whitegrid', 'white', 'dark', 'ticks']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sns_style = style
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for context in ['poster', 'talk', 'poster', 'notebook', 'paper']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sns_context = context
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.legend = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharex = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharey = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.despine = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# DataPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.min_quantile = 0.01
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.max_quantile = 0.90
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# Data1DPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.lim = (0, 1000)
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.orientation = "horizontal"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# Violin
for bw in ['silverman', 'scott']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.bw = bw
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for sp in ['count', 'area', 'width']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.scale_plot = sp
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.gridsize = 200
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for inner in ['quartile', 'box', None]:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.inner = inner
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.split = True
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testChangeThreshold(self):
self.op.threshold = 0
self.assertTrue(wait_for(self.wi, 'status', lambda v: v != 'valid', 130))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid', 30))
def testPlotParams(self):
# BasePlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.view.yfacet = "Well"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.title = "Title"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.xlabel = "X label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.ylabel = "Y label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.view.yfacet = ""
self.view.plot_params.col_wrap = 2
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for style in ['darkgrid', 'whitegrid', 'white', 'dark', 'ticks']:
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sns_style = style
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for context in ['poster', 'talk', 'poster', 'notebook', 'paper']:
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sns_context = context
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.legend = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharex = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharey = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.despine = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# DataPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.min_quantile = 0.01
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.max_quantile = 0.90
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# Data2DPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.xlim = (0, 1000)
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.ylim = (0, 1000)
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
## Density-specific params
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.gridsize = 25
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.smoothed = True
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.smoothed_sigma = 2
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testDensityPlot(self):
self.wi.default_view.show_density = True
self.wi.current_view = self.wi.default_view
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "",
120))
def testChangeBinWidthText(self):
self.op.bin_width = "0.1"
self.assertTrue(wait_for(self.wi, 'status', lambda v: v != 'valid', 5))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
def testPlotArgs(self):
# BasePlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.xfacet = "Dox"
self.view.yfacet = "Well"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.title = "Title"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.xlabel = "X label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.ylabel = "Y label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.xfacet = ""
self.view.huefacet = "Dox"
self.view.plot_params.huelabel = "Hue label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.xfacet = "Dox"
self.view.yfacet = ""
self.view.huefacet = ""
self.view.plot_params.col_wrap = 2
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
for style in ['darkgrid', 'whitegrid', 'white', 'dark', 'ticks']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.sns_style = style
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 5))
for context in ['poster', 'talk', 'poster', 'notebook', 'paper']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.sns_context = context
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.legend = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.sharex = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.sharey = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.despine = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
# DataPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.min_quantile = 0.01
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.max_quantile = 0.90
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
# Data2DPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.xlim = (0, 1000)
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.ylim = (0, 1000)
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 15))
# Scatterplot params
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.alpha = 0.5
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.s = 5
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.marker = '+'
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
for m in SCATTERPLOT_MARKERS:
self.workflow.remote_exec(
"self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.marker = m
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 5))
def testPlotArgs(self):
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.error_statistic = ("MeanByDox", "Geom.SD")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# BasePlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.title = "Title"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.xlabel = "X label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.ylabel = "Y label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.huelabel = "Hue label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.variable = "Well"
self.view.xfacet = "Dox"
self.view.huefacet = ""
self.view.plot_params.col_wrap = 2
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for style in ['darkgrid', 'whitegrid', 'white', 'dark', 'ticks']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
print(style)
self.view.plot_params.sns_style = style
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for context in ['poster', 'talk', 'poster', 'notebook', 'paper']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sns_context = context
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.legend = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharex = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharey = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.despine = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# Base1DStatisticsView
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.orientation = "horizontal"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.lim = (0, 100)
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
## BarChartView
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.errwidth = 2
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.capsize = 5
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testErrorBars(self):
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.error_statistic = ("MeanByDox", "Geom.SD")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testPlotArgs(self):
# BasePlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.view.yfacet = "Well"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.title = "Title"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.xlabel = "X label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.ylabel = "Y label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = ""
self.view.huefacet = "Dox"
self.view.plot_params.huelabel = "Hue label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.view.yfacet = ""
self.view.huefacet = ""
self.view.plot_params.col_wrap = 2
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for style in ['darkgrid', 'whitegrid', 'white', 'dark', 'ticks']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sns_style = style
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for context in ['poster', 'talk', 'poster', 'notebook', 'paper']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sns_context = context
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.legend = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharex = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.sharey = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.despine = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# DataPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.min_quantile = 0.01
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.max_quantile = 0.90
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# Data1DPlotParams
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.lim = (0, 1000)
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.orientation = "horizontal"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
# Histogram
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.num_bins = 500
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.histtype = "step"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.histtype = "bar"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
for linestyle in ['solid', 'dashed', 'dashdot', 'dotted']:
self.workflow.remote_exec(
"self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.linestyle = linestyle
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.linewidth = "5"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.density = True
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.plot_params.alpha = 0.1
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testChangeParams(self):
self.op.keep = 0.5
self.assertTrue(wait_for(self.wi, 'status', lambda v: v != 'valid', 5))
self.assertTrue(self.workflow.remote_eval("self.workflow[-1].result is None"))
def testPlotArgs(self):
# Common params
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.xfacet = "Dox"
self.view.yfacet = "Well"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.title = "Title"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.xlabel = "X label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.ylabel = "Y label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.sharex = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.sharey = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.despine = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.xfacet = ""
self.view.huefacet = "Dox"
self.view.plot_params.huelabel = "Hue label"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.legend = False
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
## Scatterplot-specific params
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.min_quantile = 0.01
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.max_quantile = 0.90
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.alpha = 0.5
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.s = 5
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.marker = '+'
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 5))
for m in SCATTERPLOT_MARKERS:
self.workflow.remote_exec(
"self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.view.plot_params.marker = m
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "", 5))
def testChangeScale(self):
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.scale = "log"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testPlot(self):
self.wi.current_view = self.wi.default_view
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testHueFacet(self):
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.huefacet = "Dox"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testChangeChannels(self):
self.op.channel = "B1-A"
self.assertTrue(wait_for(self.wi, 'status', lambda v: v != 'valid', 130))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid', 30))
def testPlot(self):
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.wi.current_view = self.wi.default_view
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 10))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.wi.default_view.current_plot = "Autofluorescence"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 10))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.wi.default_view.current_plot = "Bleedthrough"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 10))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.wi.default_view.current_plot = "Bead Calibration"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 10))
self.op.to_channel = "FITC-A"
self.op.do_color_translation = True
self.assertTrue(wait_for(self.op, 'valid_model', lambda v: not v, 30))
self.op.translation_list[
0].file = self.cwd + "/../../cytoflow/tests/data/tasbe/rby.fcs"
self.op.translation_list[
1].file = self.cwd + "/../../cytoflow/tests/data/tasbe/rby.fcs"
self.op.do_estimate = 1
self.assertTrue(wait_for(self.op, 'valid_model', lambda v: v, 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 5))
self.wi.default_view.current_plot = "Color Translation"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 10))
def testChangeName(self):
self.op.name = "Dresh"
self.assertTrue(wait_for(self.wi, 'status', lambda v: v != 'valid', 130))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid', 30))
def testChangeSubset(self):
self.op.subset_list[0].selected = ["A"]
self.assertTrue(
wait_for(self.wi, 'status', lambda v: v == 'invalid', 30))
self.assertTrue(wait_for(self.wi, 'status', lambda v: v == 'valid',
30))
def testSubset(self):
self.workflow.remote_exec("self.workflow[-1].view_error = 'waiting'")
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.subset_list[0].selected = ["A"]
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
def testAll(self):
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.scale = "log"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.scale = "logicle"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = "Dox"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = ""
self.view.yfacet = "Dox"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.yfacet = ""
self.view.huefacet = "Dox"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.huefacet = "Dox"
self.view.huescale = "log"
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))
from cytoflowgui.subset import CategorySubset
self.workflow.remote_exec("self.workflow[0].view_error = 'waiting'")
self.assertTrue(
wait_for(self.wi, 'view_error', lambda v: v == "waiting", 30))
self.view.xfacet = ""
self.view.yfacet = ""
self.view.subset_list.append(
CategorySubset(name="Well", values=['A', 'B']))
self.view.subset_list[0].selected = ['A']
self.assertTrue(wait_for(self.wi, 'view_error', lambda v: v == "", 30))