def test_get_variant_set_by_id(self):
"""Ensures that expected variant sets are present."""
# Test for variant set brca-hg36
request_hg36 = self.factory.get("/data/ga4gh/variantsets/brca-hg36")
response_hg36 = views.get_variant_set(request_hg36, "brca-hg36")
json_response36 = json.loads(response_hg36.content)
self.assertIsNotNone(json_response36["referenceSetId"])
self.assertIsNotNone(json_response36["id"])
# Test for variant set brca-hg37
request_hg37 = self.factory.get("/data/ga4gh/variantsets/brca-hg37")
response_hg37 = views.get_variant_set(request_hg37, "brca-hg37")
json_response37 = json.loads(response_hg37.content)
self.assertIsNotNone(json_response37["referenceSetId"])
self.assertIsNotNone(json_response37["id"])
# Test for variant set brca-hg38
request_hg38 = self.factory.get("/data/ga4gh/variantsets/brca-hg38")
response_hg38 = views.get_variant_set(request_hg38, "brca-hg38")
json_response38 = json.loads(response_hg38.content)
self.assertIsNotNone(json_response38["referenceSetId"])
self.assertIsNotNone(json_response38["id"])
def test_get_variant_set_by_id(self):
"""Ensures that expected variant sets are present."""
# Test for variant set brca-hg36
request_hg36 = self.factory.get("/data/ga4gh/variantsets/brca-hg36")
response_hg36 = views.get_variant_set(request_hg36, "brca-hg36")
json_response36 = json.loads(response_hg36.content)
self.assertIsNotNone(json_response36["referenceSetId"])
self.assertIsNotNone(json_response36["id"])
# Test for variant set brca-hg37
request_hg37 = self.factory.get("/data/ga4gh/variantsets/brca-hg37")
response_hg37 = views.get_variant_set(request_hg37, "brca-hg37")
json_response37 = json.loads(response_hg37.content)
self.assertIsNotNone(json_response37["referenceSetId"])
self.assertIsNotNone(json_response37["id"])
# Test for variant set brca-hg38
request_hg38 = self.factory.get("/data/ga4gh/variantsets/brca-hg38")
response_hg38 = views.get_variant_set(request_hg38, "brca-hg38")
json_response38 = json.loads(response_hg38.content)
self.assertIsNotNone(json_response38["referenceSetId"])
self.assertIsNotNone(json_response38["id"])
def test_search_and_get_variant_sets_alive(self):
"""Tests that variantsets search endpoint is alive."""
search_request = self.factory.post("/data/ga4gh/variantsets/search",
json.dumps({"datasetId": "brca"}),
content_type="application/json")
response = views.search_variant_sets(search_request)
self.assertEqual(response.status_code, 200)
get_request_hg36 = self.factory.get(
"/data/ga4gh/variantsets/brca-hg36")
response_hg36 = views.get_variant_set(get_request_hg36, "brca-hg36")
self.assertEqual(response_hg36.status_code, 200)
get_request_hg37 = self.factory.get(
"/data/ga4gh/variantsets/brca-hg37")
response_hg37 = views.get_variant_set(get_request_hg37, "brca-hg37")
self.assertEqual(response_hg37.status_code, 200)
get_request_hg38 = self.factory.get(
"/data/ga4gh/variantsets/brca-hg38")
response_hg38 = views.get_variant_set(get_request_hg38, "brca-hg38")
self.assertEqual(response_hg38.status_code, 200)
def test_search_and_get_variant_sets_alive(self):
"""Tests that variantsets search endpoint is alive."""
search_request = self.factory.post(
"/data/ga4gh/variantsets/search",
json.dumps({"datasetId": "brca"}),
content_type="application/json")
response = views.search_variant_sets(search_request)
self.assertEqual(response.status_code, 200)
get_request_hg36 = self.factory.get(
"/data/ga4gh/variantsets/brca-hg36")
response_hg36 = views.get_variant_set(get_request_hg36, "brca-hg36")
self.assertEqual(response_hg36.status_code, 200)
get_request_hg37 = self.factory.get(
"/data/ga4gh/variantsets/brca-hg37")
response_hg37 = views.get_variant_set(
get_request_hg37, "brca-hg37")
self.assertEqual(response_hg37.status_code, 200)
get_request_hg38 = self.factory.get(
"/data/ga4gh/variantsets/brca-hg38")
response_hg38 = views.get_variant_set(
get_request_hg38, "brca-hg38")
self.assertEqual(response_hg38.status_code, 200)