def setUpClass(cls):
token = environ.get('KB_AUTH_TOKEN', None)
cls.ctx = {'token': token, 'provenance': [{'service': 'data_api2',
'method': 'please_never_use_it_in_production', 'method_params': []}],
'authenticated': 1}
config_file = environ.get('KB_DEPLOYMENT_CONFIG', None)
cls.cfg = {}
config = ConfigParser()
config.read(config_file)
for nameval in config.items('data_api2'):
cls.cfg[nameval[0]] = nameval[1]
cls.wsURL = cls.cfg['workspace-url']
cls.wsClient = workspaceService(cls.wsURL, token=token)
cls.serviceImpl = data_api2(cls.cfg)
cls.obj_name="ReferenceGenomeAnnotations/kb|g.207118"
cls.obj_name="ReferenceGenomeAnnotations/kb|g.217864"
cls.feature='kb|g.207118.CDS.3237'
cls.feature='kb|g.217864.CDS.11485'
cls.gene='kb|g.217864.locus.10619'
cls.obj_name="ReferenceGenomeAnnotations/kb|g.140057"
cls.feature='kb|g.140057.CDS.2901'
cls.gene='kb|g.140057.locus.2922'
cls.mrna='kb|g.140057.mRNA.2840'
cls.taxon= u'1779/523209/1'
cls.assembly='1837/56/1'
def get_config():
if not get_config_file():
return None
retconfig = {}
config = ConfigParser()
config.read(get_config_file())
for nameval in config.items(get_service_name() or 'data_api2'):
retconfig[nameval[0]] = nameval[1]
return retconfig
config = get_config()
from data_api2.data_api2Impl import data_api2
impl_data_api2 = data_api2(config)
class JSONObjectEncoder(json.JSONEncoder):
def default(self, obj):
if isinstance(obj, set):
return list(obj)
if isinstance(obj, frozenset):
return list(obj)
if hasattr(obj, 'toJSONable'):
return obj.toJSONable()
return json.JSONEncoder.default(self, obj)
sync_methods = {}
async_run_methods = {}