def run(self):
self.parse_args(sys.argv[1:])
self.config = configxml.default_config().config
# retrieve app where name = app.name
database.connect()
database.Apps.find1(name=self.appname)
conn = db_base.get_dbconnection()
user_count = 0
credit_count = 0
transaction = self._connection.begin()
query_cursor = conn.cursor()
delete_cursor = conn.cursor()
query_cursor.execute('select userid, workunitid from credited_job ')
results = query_cursor.fetchall()
for result in results:
user_count += 1
user_id = result['userid']
area_id = result['workunitid']
area_user = self._connection.execute(
select([AREA_USER]).where(
and_(AREA_USER.c.userid == user_id,
AREA_USER.c.area_id == area_id))).first()
if area_user is None:
area = self._connection.execute(
select([AREA]).where(AREA.c.area_id == area_id)).first()
galaxy_id = area['galaxy_id']
if area is None:
print 'Area', area_id, 'not found, User', user_id, 'not Credited'
else:
AREA_USER.insert().values(userid=user_id, area_id=area_id)
GALAXY_USER.insert().prefix_with('IGNORE').values(
userid=user_id, galaxy_id=galaxy_id)
print 'User', user_id, 'Credited for Area', area_id
credit_count += 1
delete_cursor.execute("delete from credited_job where userid = " +
str(user_id) + " and workunitid = " +
str(area_id))
transaction.commit()
conn.commit()
database.close()
self._connection.close()
print user_count, 'Users', credit_count, 'Credited'
def run(self):
self.parse_args(sys.argv[1:])
self.config = configxml.default_config().config
# retrieve app where name = app.name
database.connect()
database.Apps.find1(name=self.appname)
conn = db_base.get_dbconnection()
user_count = 0
credit_count = 0
transaction = self._connection.begin()
query_cursor = conn.cursor()
delete_cursor = conn.cursor()
query_cursor.execute('select userid, workunitid from credited_job ')
results = query_cursor.fetchall()
for result in results:
user_count += 1
user_id = result['userid']
area_id = result['workunitid']
area_user = self._connection.execute(select([AREA_USER]).where(and_(AREA_USER.c.userid == user_id, AREA_USER.c.area_id == area_id))).first()
if area_user is None:
area = self._connection.execute(select([AREA]).where(AREA.c.area_id == area_id)).first()
galaxy_id = area['galaxy_id']
if area is None:
print 'Area', area_id, 'not found, User', user_id, 'not Credited'
else:
AREA_USER.insert().values(userid=user_id, area_id=area_id)
GALAXY_USER.insert().prefix_with('IGNORE').values(userid=user_id, galaxy_id=galaxy_id)
print 'User', user_id, 'Credited for Area', area_id
credit_count += 1
delete_cursor.execute("delete from credited_job where userid = " + str(user_id) + " and workunitid = " + str(area_id))
transaction.commit()
conn.commit()
database.close()
self._connection.close()
print user_count, 'Users', credit_count, 'Credited'
def assimilate_handler(self, wu, results, canonical_result):
"""
Process the Results.
"""
self.logDebug("Start of assimilate_handler for wu %d\n", wu.id)
connection = None
try:
if wu.canonical_result:
out_file = self.get_file_path(canonical_result)
self.area = None
if out_file:
if os.path.isfile(out_file):
pass
else:
self.logDebug("File [%s] not found\n", out_file)
out_file = None
if out_file:
self.logDebug("Reading File [%s]\n", out_file)
start = time.time()
connection = ENGINE.connect()
result_count = self._process_result(connection, out_file, wu)
if self.noinsert:
pass
else:
if not result_count:
self.logCritical("No results were found in the output file\n")
if self._area_id is None:
self.logDebug("The Area was not found\n")
else:
self._database_queue.append(AREA.update()
.where(AREA.c.area_id == self._area_id)
.values(workunit_id=wu.id, update_time=datetime.datetime.now()))
user_id_set = set()
for result in results:
if result.user and result.validate_state == boinc_db.VALIDATE_STATE_VALID:
user_id = result.user.id
if user_id not in user_id_set:
user_id_set.add(user_id)
self._database_queue.append(AREA_USER.delete().where(AREA_USER.c.area_id == self._area_id))
insert_area_user = AREA_USER.insert()
insert_galaxy_user = GALAXY_USER.insert().prefix_with('IGNORE')
for user_id in user_id_set:
self._database_queue.append(insert_area_user.values(area_id=self._area_id, userid=user_id))
self._database_queue.append(insert_galaxy_user.values(galaxy_id=self._galaxy_id, userid=user_id))
# Copy the file to S3
s3helper = S3Helper()
s3helper.add_file_to_bucket(get_sed_files_bucket(),
get_key_sed(self._galaxy_name, self._run_id, self._galaxy_id, self._area_id),
out_file,
reduced_redundancy=True)
time_taken = '{0:.2f}'.format(time.time() - start)
self.logDebug("Saving %d results for workunit %d in %s seconds\n", result_count, wu.id, time_taken)
self._run_pending_db_tasks(connection)
connection.close()
else:
self.logCritical("The output file was not found\n")
else:
self.logDebug("No canonical_result for workunit\n")
self.report_errors(wu)
except:
if connection is not None:
connection.close()
print "Unexpected error:", sys.exc_info()[0]
traceback.print_exception(sys.exc_info()[0], sys.exc_info()[1], sys.exc_info()[2])
self.logCritical("Unexpected error occurred, retrying...\n")
return -1
return 0
def assimilate_handler(self, wu, results, canonical_result):
"""
Process the Results.
"""
self.logDebug("Start of assimilate_handler for wu %d\n", wu.id)
connection = None
transaction = None
try:
if wu.canonical_result:
out_file = self.get_file_path(canonical_result)
self.area = None
if out_file:
if os.path.isfile(out_file):
pass
else:
self.logDebug("File [%s] not found\n", out_file)
out_file = None
if out_file:
self.logDebug("Reading File [%s]\n", out_file)
start = time.time()
connection = ENGINE.connect()
transaction = connection.begin()
resultCount = self._process_result(connection, out_file,
wu)
if self.noinsert:
transaction.rollback()
else:
if not resultCount:
self.logCritical(
"No results were found in the output file\n")
if self._area_id is None:
self.logDebug("The Area was not found\n")
else:
connection.execute(AREA.update().where(
AREA.c.area_id == self._area_id).values(
workunit_id=wu.id,
update_time=datetime.datetime.now()))
user_id_set = set()
for result in results:
if result.user and result.validate_state == boinc_db.VALIDATE_STATE_VALID:
user_id = result.user.id
if user_id not in user_id_set:
user_id_set.add(user_id)
connection.execute(AREA_USER.delete().where(
AREA_USER.c.area_id == self._area_id))
insert_area_user = AREA_USER.insert()
insert_galaxy_user = GALAXY_USER.insert(
).prefix_with('IGNORE')
for user_id in user_id_set:
connection.execute(insert_area_user,
area_id=self._area_id,
userid=user_id)
# self.logDebug("Inserting row into galaxy_user for userid: %d galaxy_id: %d\n", user_id, self._galaxy_id)
connection.execute(insert_galaxy_user,
galaxy_id=self._galaxy_id,
userid=user_id)
# Copy the file to S3
s3helper = S3Helper()
s3helper.add_file_to_bucket(
get_files_bucket(),
get_key_sed(self._galaxy_name, self._run_id,
self._galaxy_id, self._area_id),
out_file,
reduced_redundancy=True)
time_taken = '{0:.2f}'.format(time.time() - start)
self.logDebug(
"Saving %d results for workunit %d in %s seconds\n",
resultCount, wu.id, time_taken)
transaction.commit()
connection.close()
else:
self.logCritical("The output file was not found\n")
else:
self.logDebug("No canonical_result for workunit\n")
self.report_errors(wu)
except:
if transaction is not None:
transaction.rollback()
if connection is not None:
connection.close()
print "Unexpected error:", sys.exc_info()[0]
traceback.print_exception(sys.exc_info()[0],
sys.exc_info()[1],
sys.exc_info()[2])
self.logCritical("Unexpected error occurred, retrying...\n")
return -1
return 0