def test_listdir_agave(monkeypatch, agave):
h = agavehelpers.AgaveHelper(agave)
listing = h.listdir_agave_native('/sample/tacc-cloud/agavehelpers/upload',
storage_system='data-sd2e-community',
recurse=True,
directories=True)
assert '/sample/tacc-cloud/agavehelpers/upload/transcriptic/hello.txt' in listing
def test_listdir(monkeypatch, agave):
monkeypatch.setenv('CATALOG_STORAGE_SYSTEM', 'virtual_filesystem')
monkeypatch.setenv('CATALOG_ROOT_DIR',
os.path.join(PARENT, 'tests/virtual_filesystem'))
monkeypatch.setenv('CATALOG_FILES_API_PAGESIZE', '50')
h = agavehelpers.AgaveHelper(agave)
listing = h.listdir('/sample/tacc-cloud/agavehelpers/upload',
recurse=True,
directories=True)
assert '/sample/tacc-cloud/agavehelpers/upload/transcriptic/hello.txt' in listing
def test_listdir_posix(monkeypatch, agave):
monkeypatch.setenv('CATALOG_STORAGE_SYSTEM', 'virtual_filesystem')
monkeypatch.setenv('CATALOG_ROOT_DIR',
os.path.join(PARENT, 'tests/virtual_filesystem'))
monkeypatch.setenv('CATALOG_FILES_API_PAGESIZE', '50')
h = agavehelpers.AgaveHelper(agave)
listing = h.listdir_agave_posix('/sample/tacc-cloud/agavehelpers/upload',
recurse=True,
storage_system='virtual_filesystem',
directories=True)
assert '/sample/tacc-cloud/agavehelpers/upload/biofab/abcd' in listing
def test_isdir(monkeypatch, agave):
# monkeypatch.setenv('CATALOG_STORAGE_SYSTEM', 'virtual_filesystem')
# monkeypatch.setenv('CATALOG_ROOT_DIR', os.path.join(
# PARENT, 'tests/virtual_filesystem'))
# monkeypatch.setenv('CATALOG_FILES_API_PAGESIZE', 50)
h = agavehelpers.AgaveHelper(agave)
t_isdir = h.isdir('/sample/tacc-cloud/agavehelpers/upload/transcriptic/')
assert t_isdir is True
t_isdir = h.isdir(
'/sample/tacc-cloud/agavehelpers/upload/transcriptic/hello.txt')
assert t_isdir is False
def test_mapping_other_systems(agave, filename, system, mapped_path):
h = agavehelpers.AgaveHelper(agave)
pp = h.mapped_posix_path(filename, storage_system=system)
assert pp == mapped_path
def test_mapped_posix_path(agave, filename, system):
h = agavehelpers.AgaveHelper(agave)
target = '/work/projects/SD2E-Community/prod/data/sample/tacc-cloud/123.txt'
pp = h.mapped_posix_path(filename, storage_system=system)
assert pp == target