def plotInterExpBabyCount(plotName = -1, username = USERNAME, database = DATABASE):
"""
This function plots number of babies common in each pair of experiments.
"""
#establishing connection to the database
con = psy.connect(database= database, user = username)
#fetch a list of experiment ids in the database
exp_ids, names = db.getExperimentIdsDB(con)
#initailizing a matrix to store results
mtx = np.zeros((len(exp_ids), len(exp_ids)))
for ii, exp_id1 in enumerate(exp_ids):
for jj, exp_id2 in enumerate(exp_ids):
#fetching list of babies which are common in pairs of experiments
babies = db.getBabiesCommonInExp(con, exp_id1, exp_id2)
mtx[ii,jj] = len(babies)
y_labels = []
x_labels = []
for ii, label in enumerate(names):
y_labels.append('E%d_%s'%(ii+1, label))
x_labels.append('E%d'%(ii+1))
width = len(x_labels)
height = len(y_labels)
fig = plt.figure()
plt.clf()
ax = fig.add_subplot(111)
ax.set_aspect(1)
#ax.grid(which='major')
res = ax.matshow(mtx, interpolation='nearest', aspect='1', cmap=plt.cm.GnBu, extent=[0, width, height, 0])
for x in range(width):
for y in range(height):
ax.annotate(str(int(mtx[x][y])), xy=(y+0.5, x+0.5),
horizontalalignment='center',
verticalalignment='center')
divider = make_axes_locatable(ax)
cax = divider.append_axes("bottom", size="5%", pad=0.4)
cb = fig.colorbar(res, cax=cax, orientation = 'horizontal')
#Axes
ax.set_title("Baby count common in pairs of experiments", y = 1.1)
ax.set_xlabel("Experiment ID")
ax.set_ylabel("Experiment ID")
ax.set_xticks(np.arange(width)+0.5)
ax.set_xticklabels(x_labels, rotation='vertical')
ax.xaxis.labelpad = 0.5
ax.set_yticks(np.arange(height)+0.5)
ax.set_yticklabels(y_labels , rotation='horizontal')
if plotName == -1:
plt.show()
else:
plt.savefig(plotName, bbox_inches="tight")
return True
def plotInterExpBabyCount_PerLanguage(outDir,
username=USERNAME,
database=DATABASE):
"""
"""
langua_groups = {
'monolingual': ['mon', 'Mon', 'Monolingual', 'MonCat', 'MonEsp'],
'bilingual': ['BilCat', 'BilEsp', 'Bilingual', 'BilEspCat', 'bil']
}
#estblishing connection to the database
con = psy.connect(database=database, user=username)
#fetch a list of experiment ids in the database
exp_ids, names = db.getExperimentIdsDB(con)
for lang in langua_groups.keys():
#initailizing a matrix to store results
mtx = np.zeros((len(exp_ids), len(exp_ids)))
for ii, exp_id1 in enumerate(exp_ids):
for jj, exp_id2 in enumerate(exp_ids):
#fetching list of babies which are common in pairs of experiments
babies = db.getBabiesCommonInExp(con,
exp_id1,
exp_id2,
language=langua_groups[lang])
mtx[ii, jj] = len(babies)
y_labels = []
x_labels = []
for ii, label in enumerate(names):
y_labels.append('E%d_%s' % (ii + 1, label))
x_labels.append('E%d' % (ii + 1))
width = len(x_labels)
height = len(y_labels)
fig = plt.figure()
plt.clf()
ax = fig.add_subplot(111)
ax.set_aspect(1)
#ax.grid(which='major')
res = ax.matshow(mtx,
interpolation='nearest',
aspect='1',
cmap=plt.cm.GnBu,
extent=[0, width, height, 0])
for x in range(width):
for y in range(height):
ax.annotate(str(int(mtx[x][y])),
xy=(y + 0.5, x + 0.5),
horizontalalignment='center',
verticalalignment='center')
divider = make_axes_locatable(ax)
cax = divider.append_axes("bottom", size="5%", pad=0.4)
cb = fig.colorbar(res, cax=cax, orientation='horizontal')
#Axes
ax.set_title("Baby count common in pairs of experiments")
ax.set_xlabel("Experiment ID")
ax.set_ylabel("Experiment ID")
ax.set_xticks(np.arange(width) + 0.5)
ax.set_xticklabels(x_labels, rotation='vertical')
ax.xaxis.labelpad = 0.5
ax.set_yticks(np.arange(height) + 0.5)
ax.set_yticklabels(y_labels, rotation='horizontal')
plt.savefig(os.path.join(outDir, lang + '.pdf'), bbox_inches="tight")
return True
def plotInterExpBabyCount(plotName=-1, username=USERNAME, database=DATABASE):
"""
This function plots number of babies common in each pair of experiments.
"""
#establishing connection to the database
con = psy.connect(database=database, user=username)
#fetch a list of experiment ids in the database
exp_ids, names = db.getExperimentIdsDB(con)
#initailizing a matrix to store results
mtx = np.zeros((len(exp_ids), len(exp_ids)))
for ii, exp_id1 in enumerate(exp_ids):
for jj, exp_id2 in enumerate(exp_ids):
#fetching list of babies which are common in pairs of experiments
babies = db.getBabiesCommonInExp(con, exp_id1, exp_id2)
mtx[ii, jj] = len(babies)
y_labels = []
x_labels = []
for ii, label in enumerate(names):
y_labels.append('E%d_%s' % (ii + 1, label))
x_labels.append('E%d' % (ii + 1))
width = len(x_labels)
height = len(y_labels)
fig = plt.figure()
plt.clf()
ax = fig.add_subplot(111)
ax.set_aspect(1)
#ax.grid(which='major')
res = ax.matshow(mtx,
interpolation='nearest',
aspect='1',
cmap=plt.cm.GnBu,
extent=[0, width, height, 0])
for x in range(width):
for y in range(height):
ax.annotate(str(int(mtx[x][y])),
xy=(y + 0.5, x + 0.5),
horizontalalignment='center',
verticalalignment='center')
divider = make_axes_locatable(ax)
cax = divider.append_axes("bottom", size="5%", pad=0.4)
cb = fig.colorbar(res, cax=cax, orientation='horizontal')
#Axes
ax.set_title("Baby count common in pairs of experiments", y=1.1)
ax.set_xlabel("Experiment ID")
ax.set_ylabel("Experiment ID")
ax.set_xticks(np.arange(width) + 0.5)
ax.set_xticklabels(x_labels, rotation='vertical')
ax.xaxis.labelpad = 0.5
ax.set_yticks(np.arange(height) + 0.5)
ax.set_yticklabels(y_labels, rotation='horizontal')
if plotName == -1:
plt.show()
else:
plt.savefig(plotName, bbox_inches="tight")
return True
def plotInterExpBabyCount_PerLanguage(outDir, username = USERNAME, database = DATABASE):
"""
"""
langua_groups = {'monolingual': ['mon', 'Mon', 'Monolingual', 'MonCat', 'MonEsp'],
'bilingual': ['BilCat', 'BilEsp', 'Bilingual', 'BilEspCat', 'bil']}
#estblishing connection to the database
con = psy.connect(database= database, user = username)
#fetch a list of experiment ids in the database
exp_ids, names = db.getExperimentIdsDB(con)
for lang in langua_groups.keys():
#initailizing a matrix to store results
mtx = np.zeros((len(exp_ids), len(exp_ids)))
for ii, exp_id1 in enumerate(exp_ids):
for jj, exp_id2 in enumerate(exp_ids):
#fetching list of babies which are common in pairs of experiments
babies = db.getBabiesCommonInExp(con, exp_id1, exp_id2, language = langua_groups[lang])
mtx[ii,jj] = len(babies)
y_labels = []
x_labels = []
for ii, label in enumerate(names):
y_labels.append('E%d_%s'%(ii+1, label))
x_labels.append('E%d'%(ii+1))
width = len(x_labels)
height = len(y_labels)
fig = plt.figure()
plt.clf()
ax = fig.add_subplot(111)
ax.set_aspect(1)
#ax.grid(which='major')
res = ax.matshow(mtx, interpolation='nearest', aspect='1', cmap=plt.cm.GnBu, extent=[0, width, height, 0])
for x in range(width):
for y in range(height):
ax.annotate(str(int(mtx[x][y])), xy=(y+0.5, x+0.5),
horizontalalignment='center',
verticalalignment='center')
divider = make_axes_locatable(ax)
cax = divider.append_axes("bottom", size="5%", pad=0.4)
cb = fig.colorbar(res, cax=cax, orientation = 'horizontal')
#Axes
ax.set_title("Baby count common in pairs of experiments")
ax.set_xlabel("Experiment ID")
ax.set_ylabel("Experiment ID")
ax.set_xticks(np.arange(width)+0.5)
ax.set_xticklabels(x_labels, rotation='vertical')
ax.xaxis.labelpad = 0.5
ax.set_yticks(np.arange(height)+0.5)
ax.set_yticklabels(y_labels , rotation='horizontal')
plt.savefig(os.path.join(outDir, lang+'.pdf'), bbox_inches="tight")
return True